Clone Sequence Records
BO04589.3prime Sequence
690 bp (689 high quality bases) assembled on 2005-09-08
> BO04589.3prime
ATGGTCTAGAAAGCTTGCGGAGGCCAGGCCGCGCTGGCGTCGCTTCACGC
GTGCGTAAGGTCCCACTGCTGGGTCCATGATGAAGTCGTACAGAACCCGG
GTCCAGCTGGTGTGCTGTGGCATTGTGTCGTAGAATTCCTTAGCGATGCG
CTTAACCTCTGGCAGCCTGGAGCCGGGCACCGCCGGAAAGTCGTGATGCT
CGTTGTGGTAGCCCACATTGAAGGTGATCCAGTTGAGCGGACCGTAGTAG
GAGTACGTCTCAAAGCCCTTGGCGAACATGTAGTGCTCCGAGATAAAGTG
TCCGGCCACCGGGTGCAGTCCCATTGCTAGAATACTGCCGATCAACAGAT
AGGCCAGTGGCTTCCAGCCCAGAAAGTAAACGATCAGGGCGTTGAAAGTT
AGCTGCACCACGGTGTTAATAATCTCCAGGCGTGTAGGTGGCTTCGGGTT
AATAATCAGTGGACGGAAAATGTAAAAAAAAGGCTGCAGGCACACCCACA
GAAATTTTCCAAATGTGGTGTCAAACAGGCGCGCCTCCAGCAGTGTGGGT
ATGTCAGTGTCAATTGCCTCATCACCTTGGTAACGGTGATGTTCCAGATG
GTACTTTTTGAAGGAAATGCTCATGGGCAACCCGATGGGCAGGTTGCAGA
TGAAGCCCAAGATCCGGTTGTGCATAGGTCTGCTGTGTCC
BO04589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9078-PA | 966 | ifc-RA | 292..963 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 439..1110 | 690..19 | 3360 | 100 | Minus |
ifc-RB | 1656 | CG9078-RB | 418..982 | 583..19 | 2825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5987615..5988180 | 584..19 | 2830 | 100 | Minus |
2L | 23513712 | 2L | 5986786..5986896 | 690..580 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:37:47 has no hits.
BO04589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:43 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-PA | 292..966 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:23 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9078-PA | 292..966 | 15..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:18 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 439..1119 | 9..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:13 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 439..1119 | 9..690 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:13 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986786..5986892 | 584..690 | 100 | -> | Minus |
2L | 5987616..5988189 | 9..583 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:18 Download gff for
BO04589.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5986786..5986892 | 584..690 | 100 | -> | Minus |
arm_2L | 5987616..5988189 | 9..583 | 99 | | Minus |
BO04589.5prime Sequence
575 bp (306 high quality bases) assembled on 2005-09-08
> BO04589.5prime
CAGTCGACATGGGACACCACAGTTTCGCGCACCGACTTCGAGTGGGTGTA
CACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAGAAGTACC
CGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTGGGTGGCC
GGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGAAGGACCT
GTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGCATCATCA
ACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCTGGCCTTT
GGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCTGCAACCT
GCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCATCTGGAAC
ATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACCCACACTG
CTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGTGGGTGTG
CCTGCCGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAACCCGAAGC
CCCCTACCCGCCTGGAGATTATTAA
BO04589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9078-PA | 966 | ifc-RA | 12..566 | 21..575 | 2700 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 148..713 | 9..575 | 2735 | 98.9 | Plus |
ifc-RB | 1656 | CG9078-RB | 418..585 | 408..575 | 795 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5986506..5986896 | 21..411 | 1940 | 99.7 | Plus |
2L | 23513712 | 2L | 5987615..5987783 | 407..575 | 800 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:42:35 has no hits.
BO04589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:44 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-PA | 1..564 | 9..573 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:25 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9078-PA | 1..564 | 9..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:32 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..713 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:08 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..713 | 9..575 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:08 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986495..5986892 | 9..407 | 99 | -> | Plus |
2L | 5987616..5987783 | 408..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:32 Download gff for
BO04589.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5987616..5987783 | 408..575 | 98 | | Plus |
arm_2L | 5986495..5986892 | 9..407 | 99 | -> | Plus |
BO04589.complete Sequence
997 bp assembled on 2008-11-10
GenBank Submission: KX796537
> BO04589.complete
GAAGTTATCAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGC
ATCACGACTTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGC
ATCGCTAAGGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCG
GGTTCTGTACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCG
TGAAGCGACGCCAGCGCGGCCTGGCCTCCGCAAGCTTTCTAGACCAT
BO04589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 966 | CG9078-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
ifc-RB | 309 | CG9078-PB | 1..306 | 674..979 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-RA | 1784 | CG9078-RA | 148..1110 | 17..979 | 4815 | 100 | Plus |
ifc-RB | 1656 | CG9078-RB | 418..982 | 415..979 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5987615..5988180 | 414..979 | 2830 | 100 | Plus |
2L | 23513712 | 2L | 5986495..5986896 | 17..418 | 1995 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:33:33 has no hits.
BO04589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:46 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 164..1143 | 9..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:50 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..1110 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:33 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 172..1134 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:58 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ifc-RA | 148..1110 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:58 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5986495..5986892 | 17..414 | 100 | -> | Plus |
2L | 5987616..5988180 | 415..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:50 Download gff for
BO04589.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5986495..5986892 | 17..414 | 100 | -> | Plus |
arm_2L | 5987616..5988180 | 415..981 | 99 | | Plus |
BO04589.pep Sequence
Translation from 16 to 997
> BO04589.pep
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLASASFLDH
BO04589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ifc-PA | 321 | CG9078-PA | 1..321 | 1..321 | 1742 | 100 | Plus |
ifc-PB | 102 | CG9078-PB | 1..102 | 220..321 | 569 | 100 | Plus |