Clone BO04589 Report

Search the DGRC for BO04589

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptifc-RA
Protein status:BO04589.pep: Imported from assembly
Sequenced Size:997

Clone Sequence Records

BO04589.3prime Sequence

690 bp (689 high quality bases) assembled on 2005-09-08

> BO04589.3prime
ATGGTCTAGAAAGCTTGCGGAGGCCAGGCCGCGCTGGCGTCGCTTCACGC
GTGCGTAAGGTCCCACTGCTGGGTCCATGATGAAGTCGTACAGAACCCGG
GTCCAGCTGGTGTGCTGTGGCATTGTGTCGTAGAATTCCTTAGCGATGCG
CTTAACCTCTGGCAGCCTGGAGCCGGGCACCGCCGGAAAGTCGTGATGCT
CGTTGTGGTAGCCCACATTGAAGGTGATCCAGTTGAGCGGACCGTAGTAG
GAGTACGTCTCAAAGCCCTTGGCGAACATGTAGTGCTCCGAGATAAAGTG
TCCGGCCACCGGGTGCAGTCCCATTGCTAGAATACTGCCGATCAACAGAT
AGGCCAGTGGCTTCCAGCCCAGAAAGTAAACGATCAGGGCGTTGAAAGTT
AGCTGCACCACGGTGTTAATAATCTCCAGGCGTGTAGGTGGCTTCGGGTT
AATAATCAGTGGACGGAAAATGTAAAAAAAAGGCTGCAGGCACACCCACA
GAAATTTTCCAAATGTGGTGTCAAACAGGCGCGCCTCCAGCAGTGTGGGT
ATGTCAGTGTCAATTGCCTCATCACCTTGGTAACGGTGATGTTCCAGATG
GTACTTTTTGAAGGAAATGCTCATGGGCAACCCGATGGGCAGGTTGCAGA
TGAAGCCCAAGATCCGGTTGTGCATAGGTCTGCTGTGTCC

BO04589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9078-PA 966 ifc-RA 292..963 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 439..1110 690..19 3360 100 Minus
ifc-RB 1656 CG9078-RB 418..982 583..19 2825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988180 584..19 2830 100 Minus
2L 23513712 2L 5986786..5986896 690..580 540 99.1 Minus
Blast to na_te.dros performed on 2015-02-09 18:37:47 has no hits.

BO04589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:43 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-PA 292..966 15..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:23 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9078-PA 292..966 15..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:18 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 439..1119 9..690 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:13 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 439..1119 9..690 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:13 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5986786..5986892 584..690 100 -> Minus
2L 5987616..5988189 9..583 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:18 Download gff for BO04589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986786..5986892 584..690 100 -> Minus
arm_2L 5987616..5988189 9..583 99   Minus

BO04589.5prime Sequence

575 bp (306 high quality bases) assembled on 2005-09-08

> BO04589.5prime
CAGTCGACATGGGACACCACAGTTTCGCGCACCGACTTCGAGTGGGTGTA
CACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAGAAGTACC
CGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTGGGTGGCC
GGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGAAGGACCT
GTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGCATCATCA
ACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCTGGCCTTT
GGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCTGCAACCT
GCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCATCTGGAAC
ATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACCCACACTG
CTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGTGGGTGTG
CCTGCCGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAACCCGAAGC
CCCCTACCCGCCTGGAGATTATTAA

BO04589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9078-PA 966 ifc-RA 12..566 21..575 2700 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 148..713 9..575 2735 98.9 Plus
ifc-RB 1656 CG9078-RB 418..585 408..575 795 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5986506..5986896 21..411 1940 99.7 Plus
2L 23513712 2L 5987615..5987783 407..575 800 98.2 Plus
Blast to na_te.dros performed on 2015-02-10 17:42:35 has no hits.

BO04589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:44 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-PA 1..564 9..573 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:25 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9078-PA 1..564 9..573 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:32 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..713 9..575 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:08 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..713 9..575 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:08 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5986495..5986892 9..407 99 -> Plus
2L 5987616..5987783 408..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:32 Download gff for BO04589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5987616..5987783 408..575 98   Plus
arm_2L 5986495..5986892 9..407 99 -> Plus

BO04589.complete Sequence

997 bp assembled on 2008-11-10

GenBank Submission: KX796537

> BO04589.complete
GAAGTTATCAGTCGACATGGGACAGAAAGTTTCGCGCACCGACTTCGAGT
GGGTGTACACGGAGGAGCCGCACGCCTCGCGGCGCAAGATCATACTGGAG
AAGTACCCGCAGATCAAGAAGCTCTTTGGCCACGACCCGAATTTCAAGTG
GGTGGCCGGCGCAATGGTGCTCACACAGATCCTGGCGCTGTTCGTCGTGA
AGGACCTGTCGTGGTCGTGGCTCATCGTGGCCGCCTATTGCTTCGGCGGC
ATCATCAACCACTCGTTGATGCTGGCCGTTCACGAGATCTCGCACAACCT
GGCCTTTGGACACAGCAGACCTATGCACAACCGGATCTTGGGCTTCATCT
GCAACCTGCCCATCGGGTTGCCCATGAGCATTTCCTTCAAAAAGTACCAT
CTGGAACATCACCGTTACCAAGGTGATGAGGCAATTGACACTGACATACC
CACACTGCTGGAGGCGCGCCTGTTTGACACCACATTTGGAAAATTTCTGT
GGGTGTGCCTGCAGCCTTTTTTTTACATTTTCCGTCCACTGATTATTAAC
CCGAAGCCACCTACACGCCTGGAGATTATTAACACCGTGGTGCAGCTAAC
TTTCAACGCCCTGATCGTTTACTTTCTGGGCTGGAAGCCACTGGCCTATC
TGTTGATCGGCAGTATTCTAGCAATGGGACTGCACCCGGTGGCCGGACAC
TTTATCTCGGAGCACTACATGTTCGCCAAGGGCTTTGAGACGTACTCCTA
CTACGGTCCGCTCAACTGGATCACCTTCAATGTGGGCTACCACAACGAGC
ATCACGACTTTCCGGCGGTGCCCGGCTCCAGGCTGCCAGAGGTTAAGCGC
ATCGCTAAGGAATTCTACGACACAATGCCACAGCACACCAGCTGGACCCG
GGTTCTGTACGACTTCATCATGGACCCAGCAGTGGGACCTTACGCACGCG
TGAAGCGACGCCAGCGCGGCCTGGCCTCCGCAAGCTTTCTAGACCAT

BO04589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 966 CG9078-PA 1..963 17..979 4815 100 Plus
ifc-RB 309 CG9078-PB 1..306 674..979 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-RA 1784 CG9078-RA 148..1110 17..979 4815 100 Plus
ifc-RB 1656 CG9078-RB 418..982 415..979 2825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5987615..5988180 414..979 2830 100 Plus
2L 23513712 2L 5986495..5986896 17..418 1995 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 07:33:33 has no hits.

BO04589.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:50:46 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 164..1143 9..989 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:50 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..1110 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:33 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 172..1134 17..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:58 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
ifc-RA 148..1110 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:58 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5986495..5986892 17..414 100 -> Plus
2L 5987616..5988180 415..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:50 Download gff for BO04589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5986495..5986892 17..414 100 -> Plus
arm_2L 5987616..5988180 415..981 99   Plus

BO04589.pep Sequence

Translation from 16 to 997

> BO04589.pep
MGQKVSRTDFEWVYTEEPHASRRKIILEKYPQIKKLFGHDPNFKWVAGAM
VLTQILALFVVKDLSWSWLIVAAYCFGGIINHSLMLAVHEISHNLAFGHS
RPMHNRILGFICNLPIGLPMSISFKKYHLEHHRYQGDEAIDTDIPTLLEA
RLFDTTFGKFLWVCLQPFFYIFRPLIINPKPPTRLEIINTVVQLTFNALI
VYFLGWKPLAYLLIGSILAMGLHPVAGHFISEHYMFAKGFETYSYYGPLN
WITFNVGYHNEHHDFPAVPGSRLPEVKRIAKEFYDTMPQHTSWTRVLYDF
IMDPAVGPYARVKRRQRGLASASFLDH

BO04589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
ifc-PA 321 CG9078-PA 1..321 1..321 1742 100 Plus
ifc-PB 102 CG9078-PB 1..102 220..321 569 100 Plus