Clone BO04590 Report

Search the DGRC for BO04590

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:45
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG6321-RA
Protein status:BO04590.pep: validated full length
Sequenced Size:1288

Clone Sequence Records

BO04590.3prime Sequence

918 bp (765 high quality bases) assembled on 2005-12-01

> BO04590.3prime
ATGGTCTAGAAAGCTTGCTTGCTCGGCTATGTAATCCTTAAGTGCGTTGC
AAAGTCTTCTAGCACCATCCACCAACTTCGACTTCGGATAGAAGGCGATG
GACAGGCGGAAGAACTGTTTGCCACTTTGACCATCCGCAGAGAAGCGTGT
TCCTACTATAAAGTAGATCTTGTGATTCTCCATGCAGTACTTGAGAAACT
CCCGGCAGTCCAATCGATCCGGTATCCGCACCCAAATGAAGTATCCGCCC
GTGGGGCTGACCAACTTGCAGCAGTCGGGCAACTCATCTCGAAGCACTTG
CGTGGTGGCCAGCATGCGCTCCTTATAAGCTTCATAGGACTCAGAAATTT
GCTTCTGGGCTAGCTTAAGCTCAAATAGACTGCCCACAATCCCTGATGTG
TAGTTGTTGAAGCATCCACCACTAGTGGCAAAACCACTTCCATCTAAAAT
TGGTTTCAGGCGCGGAGGAACCTCAAGCCAACCCAGGCGAACTCCCGGTC
CCAGAATCTTGGAGAAACTTCCATTGGAGATAACATGTCCTGCGAAGTTG
GCATCATTTCTGTCATCATAGGACAACAGACGGCTGTGTGTGGGCGTTTC
GCCATAGTTGAGAATATTATAAACATCATCGCAGACGACAAGGAAATCAT
AATTCCTAGCAAGTTGCACAATTCCACGACAGACCTCCGGCGAGAATAGA
ATCCCCGTGGGATTATGATACGTTGGTATCGTATAGTAGATTCCCCAGAA
CTCTTTCTTCTTCGATTGAAATCGTCGTTTTGATACCTTCTCTTCAAGAT
CCTTCAGATCCACGCCATCATCGTTGAGCTTTACGGGAACTATGGTCACA
GTGCTAAAGTGTTTTATACTATCTAAAAGCATCATATAGGTGTACTCATC
GACGATTACAAAACCCTC

BO04590.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 396..1254 877..19 4295 100 Minus
CG6321-PA 1257 CG6321-RA 355..392 918..881 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 450..1349 918..19 4425 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11059682..11060350 19..687 3345 100 Plus
3L 28110227 3L 11060420..11060651 687..918 1085 97.8 Plus
Blast to na_te.dros performed on 2015-02-13 15:18:53 has no hits.

BO04590.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:45 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 355..1257 18..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:26 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 355..1257 18..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:17 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 450..1355 11..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:52 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 450..1355 11..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:52 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11059676..11060349 11..686 99 <- Plus
3L 11060420..11060651 687..918 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:17 Download gff for BO04590.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052776..11053449 11..686 99 <- Plus
arm_3L 11053520..11053751 687..918 98   Plus

BO04590.5prime Sequence

862 bp (772 high quality bases) assembled on 2005-12-01

> BO04590.5prime
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAAATGGA
AGTGGTTTTGCC

BO04590.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 1257 CG6321-RA 1..846 17..862 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 94..941 15..862 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11060420..11060722 602..300 1515 100 Minus
3L 28110227 3L 11060090..11060350 862..602 1290 99.6 Minus
3L 28110227 3L 11060967..11061131 179..15 825 100 Minus
3L 28110227 3L 11060786..11060908 300..178 615 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:57:48 has no hits.

BO04590.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:46 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:28 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:50 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 94..941 15..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:52 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 94..941 15..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:52 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11060090..11060349 603..862 99 <- Minus
3L 11060420..11060721 301..602 100 <- Minus
3L 11060786..11060907 179..300 100 <- Minus
3L 11060968..11061131 15..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:50 Download gff for BO04590.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11053190..11053449 603..862 99 <- Minus
arm_3L 11053520..11053821 301..602 100 <- Minus
arm_3L 11053886..11054007 179..300 100 <- Minus
arm_3L 11054068..11054231 15..178 100   Minus

BO04590.complete Sequence

1288 bp (1288 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629804

> BO04590.complete
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGA
AGTGGTTTTGCCACTAGTGGTGGATGCTTCAACAACTACACATCAGGGAT
TGTGGGCAGTCTATTTGAGCTTAAGCTAGCCCAGAAGCAAATTTCTGAGT
CCTATGAAGCTTATAAGGAGCGCATGCTGGCCACCACGCAAGTGCTTCGA
GATGAGTTGCCCGACTGCTGCAAGTTGGTCAGCCCCACGGGCGGATACTT
CATTTGGGTGCGGATACCGGATCGATTGGACTGCCGGGAGTTTCTCAAGT
ACTGCATGGAGAATCACAAGATCTACTTTATAGTAGGAACACGCTTCTCT
GCGGATGGTCAAAGTGGCAAACAGTTCTTCCGCCTGTCCATCGCCTTCTA
TCCGAAGTCGAAGTTGGTGGATGGTGCTAGAAGACTTTGCAACGCACTTA
AGGATTACATAGCCGAGCAAGCAAGCTTTCTAGACCAT

BO04590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1257 CG6321-PA 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-RA 1594 CG6321-RA 94..1349 15..1270 6280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11059682..11060350 1270..602 3345 100 Minus
3L 28110227 3L 11060420..11060722 602..300 1515 100 Minus
3L 28110227 3L 11060967..11061131 179..15 825 100 Minus
3L 28110227 3L 11060786..11060908 300..178 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:31:57 has no hits.

BO04590.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:07 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 1..1257 17..1271 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:07 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 89..1350 15..1278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:20 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 101..1349 22..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:07 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 89..1350 15..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:38 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
CG6321-RA 101..1349 22..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:38 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11060420..11060721 301..602 100 <- Minus
3L 11060786..11060907 179..300 100 <- Minus
3L 11060968..11061124 22..178 100   Minus
3L 11059680..11060349 603..1272 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:20 Download gff for BO04590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052780..11053449 603..1272 99 <- Minus
arm_3L 11053520..11053821 301..602 100 <- Minus
arm_3L 11053886..11054007 179..300 100 <- Minus
arm_3L 11054068..11054224 22..178 100   Minus

BO04590.pep Sequence

Translation from 16 to 1288

> BO04590.pep
MLKSSQDRKLKHLFDGGDWNVYAPNILNLGVGAPGPDILTANCDSFRTAT
DHCLEREKRENQSLIFQYGPTSGTFEVRREISTYFTEMFKSPVNCEDLII
TTGASHGLHILLSTMLDFEGFVFVDEYTYMIALDSIKHFSTVTIVPVKLN
DDGVDLKDLEEKVSKRRFQSKKKEFWGIYYTIPTYHNPTGILFSPEVCRG
IVQLARNYDFLVVCDDVYNILNYGETPTHSRLLSYDDRNDANFAGHVISN
GSFSKILGPGVRLGWLEVPPRLKPILDGSGFATSGGCFNNYTSGIVGSLF
ELKLAQKQISESYEAYKERMLATTQVLRDELPDCCKLVSPTGGYFIWVRI
PDRLDCREFLKYCMENHKIYFIVGTRFSADGQSGKQFFRLSIAFYPKSKL
VDGARRLCNALKDYIAEQASFLDH

BO04590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6321-PA 418 CG6321-PA 1..418 1..418 2225 100 Plus