Clone Sequence Records
BO04590.3prime Sequence
918 bp (765 high quality bases) assembled on 2005-12-01
> BO04590.3prime
ATGGTCTAGAAAGCTTGCTTGCTCGGCTATGTAATCCTTAAGTGCGTTGC
AAAGTCTTCTAGCACCATCCACCAACTTCGACTTCGGATAGAAGGCGATG
GACAGGCGGAAGAACTGTTTGCCACTTTGACCATCCGCAGAGAAGCGTGT
TCCTACTATAAAGTAGATCTTGTGATTCTCCATGCAGTACTTGAGAAACT
CCCGGCAGTCCAATCGATCCGGTATCCGCACCCAAATGAAGTATCCGCCC
GTGGGGCTGACCAACTTGCAGCAGTCGGGCAACTCATCTCGAAGCACTTG
CGTGGTGGCCAGCATGCGCTCCTTATAAGCTTCATAGGACTCAGAAATTT
GCTTCTGGGCTAGCTTAAGCTCAAATAGACTGCCCACAATCCCTGATGTG
TAGTTGTTGAAGCATCCACCACTAGTGGCAAAACCACTTCCATCTAAAAT
TGGTTTCAGGCGCGGAGGAACCTCAAGCCAACCCAGGCGAACTCCCGGTC
CCAGAATCTTGGAGAAACTTCCATTGGAGATAACATGTCCTGCGAAGTTG
GCATCATTTCTGTCATCATAGGACAACAGACGGCTGTGTGTGGGCGTTTC
GCCATAGTTGAGAATATTATAAACATCATCGCAGACGACAAGGAAATCAT
AATTCCTAGCAAGTTGCACAATTCCACGACAGACCTCCGGCGAGAATAGA
ATCCCCGTGGGATTATGATACGTTGGTATCGTATAGTAGATTCCCCAGAA
CTCTTTCTTCTTCGATTGAAATCGTCGTTTTGATACCTTCTCTTCAAGAT
CCTTCAGATCCACGCCATCATCGTTGAGCTTTACGGGAACTATGGTCACA
GTGCTAAAGTGTTTTATACTATCTAAAAGCATCATATAGGTGTACTCATC
GACGATTACAAAACCCTC
BO04590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 1257 | CG6321-RA | 396..1254 | 877..19 | 4295 | 100 | Minus |
CG6321-PA | 1257 | CG6321-RA | 355..392 | 918..881 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 450..1349 | 918..19 | 4425 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11059682..11060350 | 19..687 | 3345 | 100 | Plus |
3L | 28110227 | 3L | 11060420..11060651 | 687..918 | 1085 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:18:53 has no hits.
BO04590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:45 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 355..1257 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:26 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 355..1257 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:17 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 450..1355 | 11..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:52 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 450..1355 | 11..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:52 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11059676..11060349 | 11..686 | 99 | <- | Plus |
3L | 11060420..11060651 | 687..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:17 Download gff for
BO04590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11052776..11053449 | 11..686 | 99 | <- | Plus |
arm_3L | 11053520..11053751 | 687..918 | 98 | | Plus |
BO04590.5prime Sequence
862 bp (772 high quality bases) assembled on 2005-12-01
> BO04590.5prime
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAAATGGA
AGTGGTTTTGCC
BO04590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 1257 | CG6321-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 94..941 | 15..862 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11060420..11060722 | 602..300 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 11060090..11060350 | 862..602 | 1290 | 99.6 | Minus |
3L | 28110227 | 3L | 11060967..11061131 | 179..15 | 825 | 100 | Minus |
3L | 28110227 | 3L | 11060786..11060908 | 300..178 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:57:48 has no hits.
BO04590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:46 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:28 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:50 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 94..941 | 15..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:52 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 94..941 | 15..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:52 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11060090..11060349 | 603..862 | 99 | <- | Minus |
3L | 11060420..11060721 | 301..602 | 100 | <- | Minus |
3L | 11060786..11060907 | 179..300 | 100 | <- | Minus |
3L | 11060968..11061131 | 15..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:50 Download gff for
BO04590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11053190..11053449 | 603..862 | 99 | <- | Minus |
arm_3L | 11053520..11053821 | 301..602 | 100 | <- | Minus |
arm_3L | 11053886..11054007 | 179..300 | 100 | <- | Minus |
arm_3L | 11054068..11054231 | 15..178 | 100 | | Minus |
BO04590.complete Sequence
1288 bp (1288 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629804
> BO04590.complete
GAAGTTATCAGTCGACATGTTGAAATCCAGTCAAGATCGCAAGCTAAAGC
ACCTTTTCGATGGCGGTGATTGGAATGTATACGCTCCGAACATCCTAAAT
CTCGGAGTGGGTGCTCCAGGACCAGATATCCTGACCGCCAACTGTGATAG
CTTCCGGACGGCCACAGATCATTGTCTGGAACGCGAAAAGCGGGAAAACC
AGTCGCTAATTTTCCAATATGGACCAACAAGTGGAACATTCGAGGTGCGA
CGCGAGATCTCCACCTATTTCACCGAAATGTTCAAAAGTCCCGTCAATTG
TGAGGATTTGATAATAACCACAGGAGCATCCCATGGCCTTCACATACTTT
TGTCCACAATGTTGGACTTTGAGGGTTTCGTATTCGTCGATGAGTACACC
TATATGATTGCTTTAGATAGTATAAAACACTTTAGCACTGTGACCATAGT
TCCCGTAAAGCTCAACGATGATGGCGTGGATCTGAAGGATCTTGAAGAGA
AGGTATCAAAACGACGATTTCAATCGAAGAAGAAAGAGTTCTGGGGAATC
TACTATACGATACCAACGTATCATAATCCCACGGGGATTCTATTCTCGCC
GGAGGTCTGTCGTGGAATTGTGCAACTTGCTAGGAATTATGATTTCCTTG
TCGTCTGCGATGATGTTTATAATATTCTCAACTATGGCGAAACGCCCACA
CACAGCCGTCTGTTGTCCTATGATGACAGAAATGATGCCAACTTCGCAGG
ACATGTTATCTCCAATGGAAGTTTCTCCAAGATTCTGGGACCGGGAGTTC
GCCTGGGTTGGCTTGAGGTTCCTCCGCGCCTGAAACCAATTTTAGATGGA
AGTGGTTTTGCCACTAGTGGTGGATGCTTCAACAACTACACATCAGGGAT
TGTGGGCAGTCTATTTGAGCTTAAGCTAGCCCAGAAGCAAATTTCTGAGT
CCTATGAAGCTTATAAGGAGCGCATGCTGGCCACCACGCAAGTGCTTCGA
GATGAGTTGCCCGACTGCTGCAAGTTGGTCAGCCCCACGGGCGGATACTT
CATTTGGGTGCGGATACCGGATCGATTGGACTGCCGGGAGTTTCTCAAGT
ACTGCATGGAGAATCACAAGATCTACTTTATAGTAGGAACACGCTTCTCT
GCGGATGGTCAAAGTGGCAAACAGTTCTTCCGCCTGTCCATCGCCTTCTA
TCCGAAGTCGAAGTTGGTGGATGGTGCTAGAAGACTTTGCAACGCACTTA
AGGATTACATAGCCGAGCAAGCAAGCTTTCTAGACCAT
BO04590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1257 | CG6321-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-RA | 1594 | CG6321-RA | 94..1349 | 15..1270 | 6280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11059682..11060350 | 1270..602 | 3345 | 100 | Minus |
3L | 28110227 | 3L | 11060420..11060722 | 602..300 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 11060967..11061131 | 179..15 | 825 | 100 | Minus |
3L | 28110227 | 3L | 11060786..11060908 | 300..178 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:57 has no hits.
BO04590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:07 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 1..1257 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:07 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 89..1350 | 15..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:20 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 101..1349 | 22..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:07 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 89..1350 | 15..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:38 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6321-RA | 101..1349 | 22..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:38 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11060420..11060721 | 301..602 | 100 | <- | Minus |
3L | 11060786..11060907 | 179..300 | 100 | <- | Minus |
3L | 11060968..11061124 | 22..178 | 100 | | Minus |
3L | 11059680..11060349 | 603..1272 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:20 Download gff for
BO04590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11052780..11053449 | 603..1272 | 99 | <- | Minus |
arm_3L | 11053520..11053821 | 301..602 | 100 | <- | Minus |
arm_3L | 11053886..11054007 | 179..300 | 100 | <- | Minus |
arm_3L | 11054068..11054224 | 22..178 | 100 | | Minus |
BO04590.pep Sequence
Translation from 16 to 1288
> BO04590.pep
MLKSSQDRKLKHLFDGGDWNVYAPNILNLGVGAPGPDILTANCDSFRTAT
DHCLEREKRENQSLIFQYGPTSGTFEVRREISTYFTEMFKSPVNCEDLII
TTGASHGLHILLSTMLDFEGFVFVDEYTYMIALDSIKHFSTVTIVPVKLN
DDGVDLKDLEEKVSKRRFQSKKKEFWGIYYTIPTYHNPTGILFSPEVCRG
IVQLARNYDFLVVCDDVYNILNYGETPTHSRLLSYDDRNDANFAGHVISN
GSFSKILGPGVRLGWLEVPPRLKPILDGSGFATSGGCFNNYTSGIVGSLF
ELKLAQKQISESYEAYKERMLATTQVLRDELPDCCKLVSPTGGYFIWVRI
PDRLDCREFLKYCMENHKIYFIVGTRFSADGQSGKQFFRLSIAFYPKSKL
VDGARRLCNALKDYIAEQASFLDH
BO04590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6321-PA | 418 | CG6321-PA | 1..418 | 1..418 | 2225 | 100 | Plus |