Clone Sequence Records
BO04595.3prime Sequence
882 bp (786 high quality bases) assembled on 2005-12-01
> BO04595.3prime
ATGGTCTAGAAAGCTTGCATGAATGTCATTTCTAATGATATTATATTTTG
ACTTTAAAACGGAAAAATTTGTTCCAGGGGCCAAGATGTCGTTACATTGT
CGGTACCGAAATCGGTCAACGTCGCTCATTATTGTATGAAAGGTCATGTC
ATAATTTTTGGATGCAGATTCCAGTTGATCCGAGTTTAGAATAATATGTT
GCTTAAAATAGTAAATCGCTGAAGCATCTTTACTTTCCAACATTCCATTT
AAATGGAATTGCAACTTTTCGTTTATAAAATGCAATTTACAATAGTCATT
GTGAATGGAGACGGCATTGCAAAATAGATCCGCTATATTGGGAAAAGTGA
ATTGACTTCCAAGACTGCTGACCTGCCTGATTTTTGGTATACTTGGTTTC
CTTTCCATAAATTGCTTATTGTTCAACCTGTATTTCGCAGGTACTATTCT
TCCACTGAAAATTGCTCGGAATGTATTTCCACAACTTTCTACCGGTACCT
GAAAAAGTACAGCACATGATTGCTCATTAAGTTCCACAAGTTGCAGAAGC
TGGATTTTAAAATGAGGCAGATGCTCGTTTTTCATTTTACTTAACGCTAT
AACCACGCAACATTTTTTATTAACAAGTACTTCTGTGGGCAGTAGGAGGA
CATTGATGCGGTTGTCATAGCATATCAAAAGCTTCCAAAATGTCCCCTGC
AATAGGGGCCGGCTATCGATAAGTCTGACGTTAAGCACAGCGTATATACA
GCTTTTCTGATCAAGATCTAGACTCTGCGCTGCCTGTAGAAGAACATTAT
CCCTGAACATATCAATAGGTACTTGAAGGTGGTATTCCAGTGAGGGTTTA
ATGGCCGCATTTACTCTCCGGATATTTTTACT
BO04595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PB | 2145 | CG17490-RB | 1279..2142 | 882..19 | 4245 | 99.6 | Minus |
CG17490-PA | 393 | CG17490-RA | 1..390 | 408..19 | 1950 | 100 | Minus |
CG17490-PC | 405 | CG17490-RC | 3..377 | 499..125 | 1875 | 100 | Minus |
CG17490-PD | 312 | CG17490-RD | 1..284 | 408..125 | 1420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RF | 2953 | CG17490-RF | 1282..2145 | 882..19 | 4275 | 99.7 | Minus |
CG17490-RG | 2877 | CG17490-RG | 1902..2765 | 882..19 | 4275 | 99.7 | Minus |
CG17490-RE | 2315 | CG17490-RE | 1340..2203 | 882..19 | 4275 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539569..22540324 | 882..127 | 3735 | 99.6 | Minus |
2L | 23513712 | 2L | 22540377..22540485 | 127..19 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:10:09 has no hits.
BO04595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:51 Download gff for
BO04595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PB | 1279..2145 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:52 Download gff for
BO04595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1340..2211 | 10..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:59 Download gff for
BO04595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 1340..2211 | 10..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:59 Download gff for
BO04595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539569..22540324 | 127..882 | 99 | -> | Minus |
2L | 22540378..22540493 | 10..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:52 Download gff for
BO04595.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432301..22433056 | 127..882 | 99 | -> | Minus |
arm_2L | 22433110..22433225 | 10..126 | 96 | | Minus |
BO04595.5prime Sequence
867 bp (696 high quality bases) assembled on 2005-12-01
> BO04595.5prime
GAAGTTATCAGTCGACATGAACCCGTACAATAAGTTTCAAGATATGGTTT
TAAAGCAATGGTTGGTCATGGATGATGCACTTTTCCAAGCATGTGGGTTT
TGTCTAGTTGCGGCATCTGATGACCAGTCGGTGTTTATCACTTGGGACAA
GTATTATTTGCTAAACATACGCTTTAAGATGCCAGAGGACAGCTGCAGGA
TAAAAATGACTGCTGTGCGAATTCCTGTGCCTAAAAGTGGAGGAGGCTAT
ATTAGGAGTGTGCATGCTTTGAGGTACAATACGATTCTGCATATGTCGAA
TGGGGAGTTATACAGCTTTACCTCATTTAAGGCCCTGAATCTTATAAAAT
GGCTCAATGCAGTTCGTTGTTTAGCTATAGTCGATGTGGGATTCAGCGTG
ATTCGAATAGAGAATCGCCGACTGCTGCTGCAGACGTATGTTGATCTTCC
TGATTGGGAAAAGGACAAGTGTACACTGCAACATTCATTTGACATAACTT
TTGACCAGGAGAACATATTTCAGAGCGACTGGCAGCATAACGAATACACT
CTGACAACTTTAAAAGTGACCGAAAAGGAAGAAGAGTTCGCACGAACTCT
TTTCGGCACAAGAGCGGCAGAACAAAATTATATTCACATATTCAGCATAG
GTGGACATGTATTTGCGTTGGCTTATAATTACAAAACAACATCAGATAGT
ACCGGTCCTGACTATAATATCGAGCTCCTGTGCATTTATGCAGCGCACGT
TAAATTCATTAAACTGCTACCAATGGAGAACCTTTGTTTGATTTTTCTCG
GCTCTGGCAGTATAGACATGTGGTACACGTCCAGGCTCCTTTCTATAAAA
CAGCGTCAAATTTTTCA
BO04595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PB | 2145 | CG17490-RB | 21..872 | 16..867 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RG | 2877 | CG17490-RG | 644..1495 | 16..867 | 4260 | 100 | Plus |
CG17490-RE | 2315 | CG17490-RE | 82..933 | 16..867 | 4260 | 100 | Plus |
CG17490-RF | 2953 | CG17490-RF | 334..875 | 326..867 | 2695 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22538311..22539162 | 16..867 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:37:06 has no hits.
BO04595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:37:51 Download gff for
BO04595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PB | 14..871 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:32 Download gff for
BO04595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 75..932 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:35 Download gff for
BO04595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 75..932 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:35 Download gff for
BO04595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538304..22539161 | 9..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:32 Download gff for
BO04595.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22431036..22431893 | 9..866 | 99 | | Plus |
BO04595.complete Sequence
2155 bp assembled on 2010-02-24
GenBank Submission: KX795055
> BO04595.complete
GAAGTTATCAGTCGACATGAACCCGTACAATAAGTTTCAAGATATGGTTT
TAAAGCAATGGTTGGTCATGGATGATGCACTTTTCCAAGCATGTGGGTTT
TGTCTAGTTGCGGCATCTGATGACCAGTCGGTGTTTATCACTTGGGACAA
GTATTATTTGCTAAACATACGCTTTAAGATGCCAGAGGACAGCTGCAGGA
TAAAAATGACTGCTGTGCGAATTCCTGTGCCTAAAAGTGGAGGAGGCTAT
ATTAGGAGTGTGCATGCTTTGAGGTACAATACGATTCTGCATATGTCGAA
TGGGGAGTTATACAGCTTTACCTCATTTAAGGCCCTGAATCTTATAAAAT
GGCTCAATGCAGTTCGTTGTTTAGCTATAGTCGATGTGGGATTCAGCGTG
ATTCGAATAGAGAATCGCCGACTGCTGCTGCAGACGTATGTTGATCTTCC
TGATTGGGAAAAGGACAAGTGTACACTGCAACATTCATTTGACATAACTT
TTGACCAGGAGAACATATTTCAGAGCGACTGGCAGCATAACGAATACACT
CTGACAACTTTAAAAGTGACCGAAAAGGAAGAAGAGTTCGCACGAACTCT
TTTCGGCACAAGAGCGGCAGAACAAAATTATATTCACATATTCAGCATAG
GTGGACATGTATTTGCGTTGGCTTATAATTACAAAACAACATCAGATAGT
ACCGGTCCTGACTATAATATCGAGCTCCTGTGCATTTATGCAGCGCACGT
TAAATTCATTAAACTGCTACCAATGGAGAACCTTTGTTTGATTTTTCTCG
GCTCTGGCAGTATAGACATGTGGTACACGTCCAGGCTCCTTTCTATAAAA
CAGCGTCAAATTTTTCACACAGGTGCTGAATGGCTGGACTACGATGCAAC
AAGTGCCAATGGCGACGTCTATTACACAGACGGGAACCAGCTAGTGCGAC
TGCGATTCAAATACAACGCCCAGCTTGACGAGTGTTTTGTCTACACCTTG
ACGAAGCCAGTCTCCGGGATATACGCATGCTGTTGGATAGACCAAAAAGA
AGAATTGTTCTGCCTGAGCGACAACAACACACTTTATTGCATTTCTTTTG
GGATGTCCGAAATGAACGATCAAACGCTGAGAATTTCAACGCCGAACTTT
GCACCATCAGCTTTGATGAGACTGCAGCACAATGCCGAAGCCTTGCAGGA
ATATAAAAAACATCCTGATTCACTAAGGCAAAAATTATATAGGGAGTATA
AGCAACAGCAGCTTATATCTATGAGTAAAAATATCCGGAGAGTAAATGCG
GCCATTAAAACCTCACTGGAATACCACCTTCAAGTACCTATTGATATTGT
CAGGGATAATGTTCTTCTACAGGCAGCGCAGAGTCTAGATCTTGATCAGA
AAAGCTGTATATACGCTGTGCTTAACGTCAGACTTATCGATAGCCGGCCC
CTATTGCAGGGGACATTTTGGAAGCTTTTGATATGCTATGACAACCGCAT
CAATGTCCTCCTACTGCCCACAGAAGTACTTGTTAATAAAAAATGTTGCG
TGGTTATAGCGTTAAGTAAAATGAAAAACGAGCATCTGCCTCATTTTAAA
ATCCAGCTTCTGCAACTTGTGGAACTTAATGAGCAATCATGTGCTGTACT
TTTTCAGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAATTTTCA
GTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAATTTATG
GAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCTTGGAAG
TCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCGTCTCCA
TTCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTGCAATTC
CATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTACTATTT
TAAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCATCCAAAA
ATTATGACATGACCTTTCATACAATAATGAGCGACGTTGACCGATTTCGG
TACCGACAATGTAACGACATCTTGGCCCCTGGAACAAATTTTTCCGTTTT
AAAGTCAAAATATAATATCATTAGAAATGACATTCATGCAAGCTTTCTAG
ACCAT
BO04595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RG | 2124 | CG17490-PG | 1..2121 | 17..2137 | 10605 | 100 | Plus |
CG17490-RE | 2124 | CG17490-PE | 1..2121 | 17..2137 | 10605 | 100 | Plus |
CG17490-RF | 393 | CG17490-PF | 1..390 | 1748..2137 | 1950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RG | 2877 | CG17490-RG | 644..2765 | 16..2137 | 10610 | 100 | Plus |
CG17490-RE | 2315 | CG17490-RE | 82..2203 | 16..2137 | 10610 | 100 | Plus |
CG17490-RF | 2953 | CG17490-RF | 334..2145 | 326..2137 | 9045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22538311..22540324 | 16..2029 | 10070 | 100 | Plus |
2L | 23513712 | 2L | 22540377..22540485 | 2029..2137 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:27:20 has no hits.
BO04595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:34 Download gff for
BO04595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RB | 23..2143 | 17..2139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:37 Download gff for
BO04595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 83..2203 | 17..2139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:08 Download gff for
BO04595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RE | 83..2203 | 17..2139 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:08 Download gff for
BO04595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22538312..22540324 | 17..2029 | 100 | -> | Plus |
2L | 22540378..22540485 | 2030..2139 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:37 Download gff for
BO04595.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22431044..22433056 | 17..2029 | 100 | -> | Plus |
arm_2L | 22433110..22433217 | 2030..2139 | 98 | | Plus |
BO04595.pep Sequence
Translation from 16 to 2155
> BO04595.pep
MNPYNKFQDMVLKQWLVMDDALFQACGFCLVAASDDQSVFITWDKYYLLN
IRFKMPEDSCRIKMTAVRIPVPKSGGGYIRSVHALRYNTILHMSNGELYS
FTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTYVDLPDWEKD
KCTLQHSFDITFDQENIFQSDWQHNEYTLTTLKVTEKEEEFARTLFGTRA
AEQNYIHIFSIGGHVFALAYNYKTTSDSTGPDYNIELLCIYAAHVKFIKL
LPMENLCLIFLGSGSIDMWYTSRLLSIKQRQIFHTGAEWLDYDATSANGD
VYYTDGNQLVRLRFKYNAQLDECFVYTLTKPVSGIYACCWIDQKEELFCL
SDNNTLYCISFGMSEMNDQTLRISTPNFAPSALMRLQHNAEALQEYKKHP
DSLRQKLYREYKQQQLISMSKNIRRVNAAIKTSLEYHLQVPIDIVRDNVL
LQAAQSLDLDQKSCIYAVLNVRLIDSRPLLQGTFWKLLICYDNRINVLLL
PTEVLVNKKCCVVIALSKMKNEHLPHFKIQLLQLVELNEQSCAVLFQVPV
ESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQFTFP
NIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFKQHII
LNSDQLESASKNYDMTFHTIMSDVDRFRYRQCNDILAPGTNFSVLKSKYN
IIRNDIHASFLDH
BO04595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PG | 707 | CG17490-PG | 1..707 | 1..707 | 3727 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 1..707 | 1..707 | 3727 | 100 | Plus |
CG17490-PF | 130 | CG17490-PF | 1..130 | 578..707 | 686 | 100 | Plus |
CG17490-PA | 130 | CG17490-PA | 1..130 | 578..707 | 686 | 100 | Plus |
CG17490-PC | 134 | CG17490-PC | 2..125 | 548..671 | 652 | 100 | Plus |