Clone Sequence Records
BO04596.3prime Sequence
950 bp (734 high quality bases) assembled on 2005-12-01
> BO04596.3prime
ATGGTCTAGAAAGCTTGCACAGGTGGTTTCTAAAAGTGGATCAGGCTTAT
AAGTACTCGTAAAGGGGTTTACATTATTAACAATTGTGGAATCTTTGGGG
CCTCGTTGTAGGGATATAAAGTCTTCAAGGTGGCTTGTACTCTGCACTGC
GGCATCCCTACTCACATGAAATTTGTCCATCTTGTGAGGGGCAACCAGGT
GAGCCTCGCCCACGCCATCAGATGTCGGAATTTTGCTAACGTTACGATCG
CTGAGGGATAATGAGATGTTTTTCTCCAAAGGCGGTTCACGGATCTGCTC
GGACAGTCGACGGATGTTCAGGGGTAGTTCATCCTTCGATTGAGTGGGAA
TCGATAGGGAGCTGTGTCTAGAATGCAGCTTTTCTACTTGAAGCAATAAT
CTTGCTTGAACATTCGGACACAGCAAATTACTATTGTTTTGTTGTACAGA
TTTTCTAACATGGTTCGGCAATGGACTGGATATCTCCTTCACCTTGTCCG
GTAAAAAACTAGCTGACTTGCTTTGAATGTTGGCTTTCAGATCGTTAGAA
GGCTGGTCGAGAGACCAGATTTTATGCGACGTGTTGCGATATTGCGGAGA
GAATGGAGCAAAAAGCAATCCTGGCTCATTTAAAAATACTTGATCATCGT
CCAGCTCCGTTTTCGAATGCTTCAACTGCGGCTTTGCACACTTTGATTTC
TCAGTTCTGGTCGAAATTAGTTTATTGTTTATGGAAGAAAGGGATTTTTC
GCGGTAGAAATTTTTCTTGGGAAGCCGTGAGATTTCCACAGCAGCATCTG
TTTGTCTCTTGACCCACGGATCGATATTGTGATGCATGGTGTTTGAATAC
TTTTCCGTTTTGGGGGACAAGCTGTTCTTAATATGCGAGTTCTTTATCCA
TGGATCCGAAGGATACACCAAACAGCCCGTACTCCTATTGTTCGTATCGT
BO04596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33095-PA | 1617 | CG33095-RA | 683..1614 | 950..19 | 4660 | 100 | Minus |
| CG33095-PB | 1617 | CG33095-RB | 683..1614 | 950..19 | 4660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33096-RG | 3581 | CG33096-RG | 2247..3178 | 950..19 | 4660 | 100 | Minus |
| CG33096-RF | 3465 | CG33096-RF | 2131..3062 | 950..19 | 4660 | 100 | Minus |
| CG33095-RB | 3581 | CG33095-RB | 2247..3178 | 950..19 | 4660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25100812..25101743 | 950..19 | 4660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:43:07 has no hits.
BO04596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:50 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-PB | 683..1617 | 15..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:32 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-PB | 683..1617 | 15..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:35 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RA | 821..1755 | 15..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:31 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 2247..3181 | 15..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:31 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25100812..25101741 | 21..950 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:35 Download gff for
BO04596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20926534..20927463 | 21..950 | 100 | -> | Minus |
BO04596.5prime Sequence
841 bp (740 high quality bases) assembled on 2005-12-01
> BO04596.5prime
GAAGTTATCAGTCGACATGAAGTCGAACGGCTTCTTTGTTTCTCGTTTAA
AACAACCAAATATTGCTCCAACACTTCCAGTACTTTCTCCACATTCACCA
ATGAATGCTAATATACATATAAATAGCCAGCATACCCAACTTTCCGGTCG
ATATCTAAATAACAAAGTGTCCCAACAAATCGACACTGAAAGTATAAAAA
GAGTGGCATCTAACCGATCTCTAAAGGACAGTCAAAACGTCTTATCCATT
TCATCAACTCTAATATGCAACTGCGAGAAGGCCCAAAAATCGAATGGCTC
AGAAGCGGAAGCAAACGAAGAAATCAAAATTAAACTGAGCTCAGATACTG
GTAACAAATCTACCATTAGTAAATTAAAAGACCCGAAACTCTCTTCAGCG
TCGGAAAAAAACGCATTAGATAATTCAACCGAGGGTTGTTTGCAATTGAA
AAGTGTAATTGGAAAGGAGCAAAAATCGCTGTCTCCGAGACTGACGTTAC
ACAAGAGTGGGTTTCAACAGGCCATCATAATTTCCGACGACAGTGAGAAC
ACGAAGTCTTCGCGATTAGGTACCCAAACAGCAAGGCAGCTCTCCAGTAA
TTCAGACAATCAATTTTATCGACAGCTTACCCATAAGATTAGCAAATCGG
AGCAAACTTCCCCAAACAACTTGGAGCTAGACAAAGCTAACTTTCTCTAC
GATACGAACAATAGGAGTACGGGCTGTTTGGTGTATCCTTCGGATCCATG
GATAAAGAACTCGCATATTAAGAACAGCTTGTCCCCCAAAACGGAAAAGT
ATTCAAACACCATGCATCACAATATCGATCCGTGGGTCAAG
BO04596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33095-PA | 1617 | CG33095-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG33095-PB | 1617 | CG33095-RB | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33096-RG | 3581 | CG33096-RG | 1561..2389 | 13..841 | 4130 | 99.9 | Plus |
| CG33096-RF | 3465 | CG33096-RF | 1445..2273 | 13..841 | 4130 | 99.9 | Plus |
| CG33095-RB | 3581 | CG33095-RB | 1561..2389 | 13..841 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25100126..25100954 | 13..841 | 4130 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:16 has no hits.
BO04596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:51 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-PB | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:33 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-PB | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:16 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RA | 129..963 | 7..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:59 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 1555..2389 | 7..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:59 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25100120..25100954 | 7..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:16 Download gff for
BO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20925842..20926676 | 7..841 | 99 | | Plus |
BO04596.complete Sequence
1648 bp (1648 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ629805
> BO04596.complete
GAAGTTATCAGTCGACATGAAGTCGAACGGCTTCTTTGTTTCTCGTTTAA
AACAACCAAATATTGCTCCAACACTTCCAGTACTTTCTCCACATTCACCA
ATGAATGCTAATATACATATAAATAGCCAGCATACCCAACTTTCCGGTCG
ATATCTAAATAACAAAGTGTCCCAACAAATCGACACTGAAAGTATAAAAA
GAGTGGCATCTAACCGATCTCTAAAGGACAGTCAAAACGTCTTATCCATT
TCATCAACTCTAATATGCAACTGCGAGAAGGCCCAAAAATCGAATGGCTC
AGAAGCGGAAGCAAACGAAGAAATCAAAATTAAACTGAGCTCAGATACTG
GTAACAAATCTACCATTAGTAAATTAAAAGACCCGAAACTCTCTTCAGCG
TCGGAAAAAAACGCATTAGATAATTCAACCGAGGGTTGTTTGCAATTGAA
AAGTGTAATTGGAAAGGAGCAAAAATCGCTGTCTCCGAGACTGACGTTAC
ACAAGAGTGGGTTTCAACAGGCCATCATAATTTCCGACGACAGTGAGAAC
ACGAAGTCTTCGCGATTAGGTACCCAAACAGCAAGGCAGCTCTCCAGTAA
TTCAGACAATCAATTTTATCGACAGCTTACCCATAAGATTAGCAAATCGG
AGCAAACTTCCCCAAACAACTTGGAGCTAGACAAAGCTAACTTTCTCTAC
GATACGAACAATAGGAGTACGGGCTGTTTGGTGTATCCTTCGGATCCATG
GATAAAGAACTCGCATATTAAGAACAGCTTGTCCCCCAAAACGGAAAAGT
ATTCAAACACCATGCATCACAATATCGATCCGTGGGTCAAGAGACAAACA
GATGCTGCTGTGGAAATCTCACGGCTTCCCAAGAAAAATTTCTACCGCGA
AAAATCCCTTTCTTCCATAAACAATAAACTAATTTCGACCAGAACTGAGA
AATCAAAGTGTGCAAAGCCGCAGTTGAAGCATTCGAAAACGGAGCTGGAC
GATGATCAAGTATTTTTAAATGAGCCAGGATTGCTTTTTGCTCCATTCTC
TCCGCAATATCGCAACACGTCGCATAAAATCTGGTCTCTCGACCAGCCTT
CTAACGATCTGAAAGCCAACATTCAAAGCAAGTCAGCTAGTTTTTTACCG
GACAAGGTGAAGGAGATATCCAGTCCATTGCCGAACCATGTTAGAAAATC
TGTACAACAAAACAATAGTAATTTGCTGTGTCCGAATGTTCAAGCAAGAT
TATTGCTTCAAGTAGAAAAGCTGCATTCTAGACACAGCTCCCTATCGATT
CCCACTCAATCGAAGGATGAACTACCCCTGAACATCCGTCGACTGTCCGA
GCAGATCCGTGAACCGCCTTTGGAGAAAAACATCTCATTATCCCTCAGCG
ATCGTAACGTTAGCAAAATTCCGACATCTGATGGCGTGGGCGAGGCTCAC
CTGGTTGCCCCTCACAAGATGGACAAATTTCATGTGAGTAGGGATGCCGC
AGTGCAGAGTACAAGCCACCTTGAAGACTTTATATCCCTACAACGAGGCC
CCAAAGATTCCACAATTGTTAATAATGTAAACCCCTTTACGAGTACTTAT
AAGCCTGATCCACTTTTAGAAACCACCTGTGCAAGCTTTCTAGACCAT
BO04596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33095-RB | 1617 | CG33095-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| CG33095-RA | 1617 | CG33095-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33096-RG | 3581 | CG33096-RG | 1561..3178 | 13..1630 | 8075 | 99.9 | Plus |
| CG33096-RF | 3465 | CG33096-RF | 1445..3062 | 13..1630 | 8075 | 99.9 | Plus |
| CG33095-RB | 3581 | CG33095-RB | 1561..3178 | 13..1630 | 8075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25100126..25101743 | 13..1630 | 8075 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:59:30 has no hits.
BO04596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:26 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 1..1617 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:48 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 464..2090 | 7..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:32 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RA | 139..1752 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:26 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 464..2090 | 7..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:40 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33095-RB | 1565..3178 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:40 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25100130..25101743 | 17..1632 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:32 Download gff for
BO04596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20925852..20927465 | 17..1632 | 99 | | Plus |
BO04596.pep Sequence
Translation from 16 to 1648
> BO04596.pep
MKSNGFFVSRLKQPNIAPTLPVLSPHSPMNANIHINSQHTQLSGRYLNNK
VSQQIDTESIKRVASNRSLKDSQNVLSISSTLICNCEKAQKSNGSEAEAN
EEIKIKLSSDTGNKSTISKLKDPKLSSASEKNALDNSTEGCLQLKSVIGK
EQKSLSPRLTLHKSGFQQAIIISDDSENTKSSRLGTQTARQLSSNSDNQF
YRQLTHKISKSEQTSPNNLELDKANFLYDTNNRSTGCLVYPSDPWIKNSH
IKNSLSPKTEKYSNTMHHNIDPWVKRQTDAAVEISRLPKKNFYREKSLSS
INNKLISTRTEKSKCAKPQLKHSKTELDDDQVFLNEPGLLFAPFSPQYRN
TSHKIWSLDQPSNDLKANIQSKSASFLPDKVKEISSPLPNHVRKSVQQNN
SNLLCPNVQARLLLQVEKLHSRHSSLSIPTQSKDELPLNIRRLSEQIREP
PLEKNISLSLSDRNVSKIPTSDGVGEAHLVAPHKMDKFHVSRDAAVQSTS
HLEDFISLQRGPKDSTIVNNVNPFTSTYKPDPLLETTCASFLDH
BO04596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33095-PB | 538 | CG33095-PB | 1..538 | 1..538 | 2756 | 100 | Plus |
| CG33095-PA | 538 | CG33095-PA | 1..538 | 1..538 | 2756 | 100 | Plus |
