Clone BO04605 Report

Search the DGRC for BO04605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptSnp-RD
Protein status:BO04605.pep: validated full length
Sequenced Size:877

Clone Sequence Records

BO04605.3prime Sequence

875 bp (874 high quality bases) assembled on 2005-12-01

> BO04605.3prime
ATGGTCTAGAAAGCTTGCCAACACGAACCTGGGATTAAGCTGCTGATATG
GCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTTG
CACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCTT
GCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCACG
GACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTGA
TTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCAA
GCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCCA
GTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCATC
TCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCAT
TCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAGG
CGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGCC
TCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTAT
CTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCCT
CAAAGTCCACGGCAATCACATATGAGTAGGGTTGCATGGCTAGACGCTTG
GACTTCCTTGACTTCTTGCTTTTGGCGGGCACTGAGTTGGCCTCTGTGAC
TTCGTCCTCGTTGAACGACTCCTCGGGATCGTTATTTGGATCTGGGCGAG
CTCCGTCGACGTATATGGTATCGATCAGGCCCAGTTGCCTTGCTAGTTTT
ATCAAGGCCATGTCGACTGATAACT

BO04605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 1..843 861..19 4215 100 Minus
CG6393-PD 672 CG6393-RD 1..669 687..19 3345 100 Minus
CG6393-PC 672 CG6393-RC 1..669 687..19 3345 100 Minus
CG6393-PB 672 CG6393-RB 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1452 861..19 4215 100 Minus
Snp-RF 1419 CG44248-RF 151..972 840..19 4110 100 Minus
Snp-RG 1667 CG44248-RG 401..1220 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069310 594..19 2880 100 Minus
2R 25286936 2R 22068425..22068671 840..594 1235 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:19:26 has no hits.

BO04605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:52 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 16..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:35 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 16..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:37 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 11..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:27 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 11..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:27 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068427..22068671 594..838 100 -> Minus
2R 22068736..22069316 11..593 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:37 Download gff for BO04605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17955932..17956176 594..838 100 -> Minus
arm_2R 17956241..17956821 11..593 99   Minus

BO04605.5prime Sequence

876 bp (811 high quality bases) assembled on 2005-11-29

> BO04605.5prime
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGGCAAGCTTTCTAGACCA

BO04605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6393-PA 846 CG6393-RA 1..843 17..859 4215 100 Plus
CG6393-PD 672 CG6393-RD 1..669 191..859 3345 100 Plus
CG6393-PC 672 CG6393-RC 1..669 191..859 3345 100 Plus
CG6393-PB 672 CG6393-RB 1..669 191..859 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1452 17..859 4215 100 Plus
Snp-RF 1419 CG44248-RF 151..972 38..859 4110 100 Plus
Snp-RG 1667 CG44248-RG 401..1220 40..859 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069310 284..859 2880 100 Plus
2R 25286936 2R 22068425..22068671 38..284 1235 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:08:19 has no hits.

BO04605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:53 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:37 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6393-PA 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:18 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 9..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:04 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 605..1458 9..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:04 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22068427..22068671 40..284 100 -> Plus
2R 22068736..22069316 285..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:18 Download gff for BO04605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17955932..17956176 40..284 100 -> Plus
arm_2R 17956241..17956821 285..867 99   Plus

BO04605.complete Sequence

877 bp (877 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629806

> BO04605.complete
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGGCAAGCTTTCTAGACCAT

BO04605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 846 CG44248-PD 1..843 17..859 4215 100 Plus
Snp-RG 672 CG44248-PG 1..669 191..859 3345 100 Plus
Snp-RF 672 CG44248-PF 1..669 191..859 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-RD 1899 CG44248-RD 610..1452 17..859 4215 100 Plus
Snp-RF 1419 CG44248-RF 151..972 38..859 4110 100 Plus
Snp-RG 1667 CG44248-RG 401..1220 40..859 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22068735..22069310 284..859 2880 100 Plus
2R 25286936 2R 22068425..22068671 38..284 1235 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:56:32 has no hits.

BO04605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:08 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 1..846 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:10 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 602..1455 9..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:00 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 610..1452 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:08 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
CG42257-RD 602..1455 9..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:20 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
Snp-RD 610..1452 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:20 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22061559..22061581 17..39 100 -> Plus
2R 22068427..22068671 40..284 100 -> Plus
2R 22068736..22069310 285..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:00 Download gff for BO04605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17949064..17949086 17..39 100 -> Plus
arm_2R 17955932..17956176 40..284 100 -> Plus
arm_2R 17956241..17956815 285..861 99   Plus

BO04605.pep Sequence

Translation from 16 to 877

> BO04605.pep
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVLASFLDH

BO04605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Snp-PD 281 CG44248-PD 1..281 1..281 1497 100 Plus
Snp-PG 223 CG44248-PG 1..223 59..281 1207 100 Plus
Snp-PF 223 CG44248-PF 1..223 59..281 1207 100 Plus
Snp-PE 223 CG44248-PE 1..223 59..281 1207 100 Plus