Clone Sequence Records
BO04605.3prime Sequence
875 bp (874 high quality bases) assembled on 2005-12-01
> BO04605.3prime
ATGGTCTAGAAAGCTTGCCAACACGAACCTGGGATTAAGCTGCTGATATG
GCGTCAGATCTTTGGTGATCGAGAATAGCGCCCCGTCGCGCACCATCTTG
CACATGAGTGCGCCCAGATTCTTGGCATCGTCGATCCCCGAGTGGGCCTT
GCCCTCGAATGCCAGACCCACGTGCGACAGGGCATCCGTGAAGTTGCACG
GACGGTACTTGTACCACGACCGATAAATGGCCCGCACGTCGATCCACTGA
TTAAAGTAGGCCGGCTTGCGTATCCCTTTGCGGCTGCACTCCTTCGCCAA
GCAGATGCCGAAGTCCCAGTCCGTCCAGGTGACGAATGCACAGTTGCCCA
GTATGTTTGACTTGTTCATCTTGGGCAAGGTAAGGTTGCGGGCTCGCATC
TCATTGCGCAGCCATTCGTTAAACATCACGATCGCCGTCCGCAGCGGCAT
TCCGCTGTCCACAGTCTTCTGCTGGATGCCCGTCAGCTCCGTGCAGTAGG
CGCTCAAGCGCGGCGACTCGAAGGGAAGGATGTACTGGTGGAATTCCGCC
TCGATCTTTCCTGTCTTAAGGTTAACAAGCACTGCTGGGAATTCAATTAT
CTCCGCTTCTCGCCACTCTGGCGGAGCCTGCTTTTCCCAGCAGGTTGCCT
CAAAGTCCACGGCAATCACATATGAGTAGGGTTGCATGGCTAGACGCTTG
GACTTCCTTGACTTCTTGCTTTTGGCGGGCACTGAGTTGGCCTCTGTGAC
TTCGTCCTCGTTGAACGACTCCTCGGGATCGTTATTTGGATCTGGGCGAG
CTCCGTCGACGTATATGGTATCGATCAGGCCCAGTTGCCTTGCTAGTTTT
ATCAAGGCCATGTCGACTGATAACT
BO04605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 1..843 | 861..19 | 4215 | 100 | Minus |
CG6393-PD | 672 | CG6393-RD | 1..669 | 687..19 | 3345 | 100 | Minus |
CG6393-PC | 672 | CG6393-RC | 1..669 | 687..19 | 3345 | 100 | Minus |
CG6393-PB | 672 | CG6393-RB | 1..669 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1452 | 861..19 | 4215 | 100 | Minus |
Snp-RF | 1419 | CG44248-RF | 151..972 | 840..19 | 4110 | 100 | Minus |
Snp-RG | 1667 | CG44248-RG | 401..1220 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069310 | 594..19 | 2880 | 100 | Minus |
2R | 25286936 | 2R | 22068425..22068671 | 840..594 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:19:26 has no hits.
BO04605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:52 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:35 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 16..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:37 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 11..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:27 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 11..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:27 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068427..22068671 | 594..838 | 100 | -> | Minus |
2R | 22068736..22069316 | 11..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:37 Download gff for
BO04605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17955932..17956176 | 594..838 | 100 | -> | Minus |
arm_2R | 17956241..17956821 | 11..593 | 99 | | Minus |
BO04605.5prime Sequence
876 bp (811 high quality bases) assembled on 2005-11-29
> BO04605.5prime
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGGCAAGCTTTCTAGACCA
BO04605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6393-PA | 846 | CG6393-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
CG6393-PD | 672 | CG6393-RD | 1..669 | 191..859 | 3345 | 100 | Plus |
CG6393-PC | 672 | CG6393-RC | 1..669 | 191..859 | 3345 | 100 | Plus |
CG6393-PB | 672 | CG6393-RB | 1..669 | 191..859 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1452 | 17..859 | 4215 | 100 | Plus |
Snp-RF | 1419 | CG44248-RF | 151..972 | 38..859 | 4110 | 100 | Plus |
Snp-RG | 1667 | CG44248-RG | 401..1220 | 40..859 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069310 | 284..859 | 2880 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 38..284 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:19 has no hits.
BO04605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:53 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:37 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6393-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:18 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:04 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 605..1458 | 9..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:04 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22068427..22068671 | 40..284 | 100 | -> | Plus |
2R | 22068736..22069316 | 285..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:18 Download gff for
BO04605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17955932..17956176 | 40..284 | 100 | -> | Plus |
arm_2R | 17956241..17956821 | 285..867 | 99 | | Plus |
BO04605.complete Sequence
877 bp (877 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629806
> BO04605.complete
GAAGTTATCAGTCGACATGGCCTTGATAAAACTAGCAAGGCAACTGGGCC
TGATCGATACCATATACGTCGACGGAGCTCGCCCAGATCCAAATAACGAT
CCCGAGGAGTCGTTCAACGAGGACGAAGTCACAGAGGCCAACTCAGTGCC
CGCCAAAAGCAAGAAGTCAAGGAAGTCCAAGCGTCTAGCCATGCAACCCT
ACTCATATGTGATTGCCGTGGACTTTGAGGCAACCTGCTGGGAAAAGCAG
GCTCCGCCAGAGTGGCGAGAAGCGGAGATAATTGAATTCCCAGCAGTGCT
TGTTAACCTTAAGACAGGAAAGATCGAGGCGGAATTCCACCAGTACATCC
TTCCCTTCGAGTCGCCGCGCTTGAGCGCCTACTGCACGGAGCTGACGGGC
ATCCAGCAGAAGACTGTGGACAGCGGAATGCCGCTGCGGACGGCGATCGT
GATGTTTAACGAATGGCTGCGCAATGAGATGCGAGCCCGCAACCTTACCT
TGCCCAAGATGAACAAGTCAAACATACTGGGCAACTGTGCATTCGTCACC
TGGACGGACTGGGACTTCGGCATCTGCTTGGCGAAGGAGTGCAGCCGCAA
AGGGATACGCAAGCCGGCCTACTTTAATCAGTGGATCGACGTGCGGGCCA
TTTATCGGTCGTGGTACAAGTACCGTCCGTGCAACTTCACGGATGCCCTG
TCGCACGTGGGTCTGGCATTCGAGGGCAAGGCCCACTCGGGGATCGACGA
TGCCAAGAATCTGGGCGCACTCATGTGCAAGATGGTGCGCGACGGGGCGC
TATTCTCGATCACCAAAGATCTGACGCCATATCAGCAGCTTAATCCCAGG
TTCGTGTTGGCAAGCTTTCTAGACCAT
BO04605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 846 | CG44248-PD | 1..843 | 17..859 | 4215 | 100 | Plus |
Snp-RG | 672 | CG44248-PG | 1..669 | 191..859 | 3345 | 100 | Plus |
Snp-RF | 672 | CG44248-PF | 1..669 | 191..859 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-RD | 1899 | CG44248-RD | 610..1452 | 17..859 | 4215 | 100 | Plus |
Snp-RF | 1419 | CG44248-RF | 151..972 | 38..859 | 4110 | 100 | Plus |
Snp-RG | 1667 | CG44248-RG | 401..1220 | 40..859 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22068735..22069310 | 284..859 | 2880 | 100 | Plus |
2R | 25286936 | 2R | 22068425..22068671 | 38..284 | 1235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:56:32 has no hits.
BO04605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:08 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:10 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 602..1455 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:00 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 610..1452 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:08 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42257-RD | 602..1455 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:20 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Snp-RD | 610..1452 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:20 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22061559..22061581 | 17..39 | 100 | -> | Plus |
2R | 22068427..22068671 | 40..284 | 100 | -> | Plus |
2R | 22068736..22069310 | 285..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:00 Download gff for
BO04605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17949064..17949086 | 17..39 | 100 | -> | Plus |
arm_2R | 17955932..17956176 | 40..284 | 100 | -> | Plus |
arm_2R | 17956241..17956815 | 285..861 | 99 | | Plus |
BO04605.pep Sequence
Translation from 16 to 877
> BO04605.pep
MALIKLARQLGLIDTIYVDGARPDPNNDPEESFNEDEVTEANSVPAKSKK
SRKSKRLAMQPYSYVIAVDFEATCWEKQAPPEWREAEIIEFPAVLVNLKT
GKIEAEFHQYILPFESPRLSAYCTELTGIQQKTVDSGMPLRTAIVMFNEW
LRNEMRARNLTLPKMNKSNILGNCAFVTWTDWDFGICLAKECSRKGIRKP
AYFNQWIDVRAIYRSWYKYRPCNFTDALSHVGLAFEGKAHSGIDDAKNLG
ALMCKMVRDGALFSITKDLTPYQQLNPRFVLASFLDH
BO04605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Snp-PD | 281 | CG44248-PD | 1..281 | 1..281 | 1497 | 100 | Plus |
Snp-PG | 223 | CG44248-PG | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PF | 223 | CG44248-PF | 1..223 | 59..281 | 1207 | 100 | Plus |
Snp-PE | 223 | CG44248-PE | 1..223 | 59..281 | 1207 | 100 | Plus |