Clone Sequence Records
BO04606.3prime Sequence
491 bp (490 high quality bases) assembled on 2005-12-01
> BO04606.3prime
ATGGTCTAGAAAGCTTGCAGAGCGTGGAATGAGCCAAGATCCAAGTCCTA
ATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGGA
GCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGTT
GCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAGC
GCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACACG
TAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGCG
GATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTGT
TCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTCC
AGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTAG
CACCACAGCTATCTCCCACGATTTCATGTCGACTGATAACT
BO04606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..459 | 477..19 | 2295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..531 | 477..19 | 2295 | 100 | Minus |
cold-RA | 1093 | CG2813-RA | 134..592 | 477..19 | 2295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 421..109 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 575144..575233 | 108..19 | 450 | 100 | Minus |
2L | 23513712 | 2L | 574641..574698 | 477..420 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:37:56 has no hits.
BO04606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:54 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:38 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 18..477 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:20 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 13..485 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:13 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 13..485 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:13 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574631..574698 | 420..485 | 94 | -> | Minus |
2L | 574780..575090 | 109..419 | 100 | -> | Minus |
2L | 575144..575237 | 13..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:20 Download gff for
BO04606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574631..574698 | 420..485 | 94 | -> | Minus |
arm_2L | 574780..575090 | 109..419 | 100 | -> | Minus |
arm_2L | 575144..575237 | 13..108 | 96 | | Minus |
BO04606.5prime Sequence
491 bp (490 high quality bases) assembled on 2005-11-29
> BO04606.5prime
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTGCAAGCTTTCTAGACC
BO04606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2813-PA | 462 | CG2813-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..531 | 17..475 | 2295 | 100 | Plus |
cold-RA | 1093 | CG2813-RA | 134..592 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 73..385 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 575144..575233 | 386..475 | 450 | 100 | Plus |
2L | 23513712 | 2L | 574641..574698 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:36:17 has no hits.
BO04606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:54 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:39 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-PA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:55 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 9..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:54 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 124..596 | 9..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:54 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574631..574698 | 9..74 | 94 | -> | Plus |
2L | 575144..575237 | 386..481 | 96 | | Plus |
2L | 574780..575090 | 75..385 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:55 Download gff for
BO04606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574631..574698 | 9..74 | 94 | -> | Plus |
arm_2L | 574780..575090 | 75..385 | 100 | -> | Plus |
arm_2L | 575144..575237 | 386..481 | 96 | | Plus |
BO04606.complete Sequence
493 bp (493 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629807
> BO04606.complete
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTGCAAGCTTTCTAGACCAT
BO04606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 462 | CG2813-PB | 1..459 | 17..475 | 2295 | 100 | Plus |
cold-RA | 462 | CG2813-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-RB | 1032 | CG2813-RB | 73..531 | 17..475 | 2295 | 100 | Plus |
cold-RA | 1093 | CG2813-RA | 134..592 | 17..475 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 574778..575090 | 73..385 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 575144..575233 | 386..475 | 450 | 100 | Plus |
2L | 23513712 | 2L | 574641..574698 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:48:58 has no hits.
BO04606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:57 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 1..462 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:27 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 119..591 | 9..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:28 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 134..592 | 17..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:58 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2813-RA | 119..591 | 9..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:05 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cold-RA | 134..592 | 17..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:05 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 574780..575090 | 75..385 | 100 | -> | Plus |
2L | 575144..575233 | 386..477 | 97 | | Plus |
2L | 574641..574698 | 17..74 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:28 Download gff for
BO04606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 574780..575090 | 75..385 | 100 | -> | Plus |
arm_2L | 575144..575233 | 386..477 | 97 | | Plus |
arm_2L | 574641..574698 | 17..74 | 100 | -> | Plus |
BO04606.pep Sequence
Translation from 16 to 493
> BO04606.pep
MKSWEIAVVLVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEP
FENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTKEQCQSKRKRYMQLYCT
HIWYEDWACNECCKGDRCNYFVISGAPSRQGYGVCLTLLTALLGLGSWLI
PRSASFLDH
BO04606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cold-PB | 153 | CG2813-PB | 1..153 | 1..153 | 857 | 100 | Plus |
cold-PA | 153 | CG2813-PA | 1..153 | 1..153 | 857 | 100 | Plus |