Clone BO04606 Report

Search the DGRC for BO04606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptcold-RA
Protein status:BO04606.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO04606.3prime Sequence

491 bp (490 high quality bases) assembled on 2005-12-01

> BO04606.3prime
ATGGTCTAGAAAGCTTGCAGAGCGTGGAATGAGCCAAGATCCAAGTCCTA
ATAGTGCGGTGAGCAGGGTTAAACAGACACCATAGCCTTGTCTTGAAGGA
GCGCCACTAATGACAAAGTAGTTGCACCGATCTCCCTTGCAGCACTCGTT
GCACGCCCAATCCTCGTACCAGATGTGGGTGCAGTACAGCTGCATATAGC
GCTTCCTCTTGGACTGGCACTGCTCCTTGGTCATGCACCTCTTGGACACG
TAGTATTGCTTAAGAGCACCCTCCGAGAAGTACGGCTGGGATCCCCAGCG
GATCTCCGTTCCGCAGACGTTTTCAAAGGGCTCGCAGGTCTTGATGGTGT
TCAGGCACTTCTCCGTGTTGCCCGTCTGGTTGGAGCAGACATAGCACTCC
AGACCGGCCACGAAATTTACTTGCGAACACAAGTAAACAGCGGCGACTAG
CACCACAGCTATCTCCCACGATTTCATGTCGACTGATAACT

BO04606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..531 477..19 2295 100 Minus
cold-RA 1093 CG2813-RA 134..592 477..19 2295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 421..109 1565 100 Minus
2L 23513712 2L 575144..575233 108..19 450 100 Minus
2L 23513712 2L 574641..574698 477..420 290 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:37:56 has no hits.

BO04606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:54 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:38 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:20 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 13..485 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:13 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 13..485 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:13 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 574631..574698 420..485 94 -> Minus
2L 574780..575090 109..419 100 -> Minus
2L 575144..575237 13..108 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:20 Download gff for BO04606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574631..574698 420..485 94 -> Minus
arm_2L 574780..575090 109..419 100 -> Minus
arm_2L 575144..575237 13..108 96   Minus

BO04606.5prime Sequence

491 bp (490 high quality bases) assembled on 2005-11-29

> BO04606.5prime
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTGCAAGCTTTCTAGACC

BO04606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2813-PA 462 CG2813-RA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..531 17..475 2295 100 Plus
cold-RA 1093 CG2813-RA 134..592 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 73..385 1565 100 Plus
2L 23513712 2L 575144..575233 386..475 450 100 Plus
2L 23513712 2L 574641..574698 17..74 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:36:17 has no hits.

BO04606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:54 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:39 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2813-PA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:55 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 9..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:54 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
cold-RA 124..596 9..481 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:54 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 574631..574698 9..74 94 -> Plus
2L 575144..575237 386..481 96   Plus
2L 574780..575090 75..385 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:55 Download gff for BO04606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574631..574698 9..74 94 -> Plus
arm_2L 574780..575090 75..385 100 -> Plus
arm_2L 575144..575237 386..481 96   Plus

BO04606.complete Sequence

493 bp (493 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629807

> BO04606.complete
GAAGTTATCAGTCGACATGAAATCGTGGGAGATAGCTGTGGTGCTAGTCG
CCGCTGTTTACTTGTGTTCGCAAGTAAATTTCGTGGCCGGTCTGGAGTGC
TATGTCTGCTCCAACCAGACGGGCAACACGGAGAAGTGCCTGAACACCAT
CAAGACCTGCGAGCCCTTTGAAAACGTCTGCGGAACGGAGATCCGCTGGG
GATCCCAGCCGTACTTCTCGGAGGGTGCTCTTAAGCAATACTACGTGTCC
AAGAGGTGCATGACCAAGGAGCAGTGCCAGTCCAAGAGGAAGCGCTATAT
GCAGCTGTACTGCACCCACATCTGGTACGAGGATTGGGCGTGCAACGAGT
GCTGCAAGGGAGATCGGTGCAACTACTTTGTCATTAGTGGCGCTCCTTCA
AGACAAGGCTATGGTGTCTGTTTAACCCTGCTCACCGCACTATTAGGACT
TGGATCTTGGCTCATTCCACGCTCTGCAAGCTTTCTAGACCAT

BO04606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 462 CG2813-PB 1..459 17..475 2295 100 Plus
cold-RA 462 CG2813-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
cold-RB 1032 CG2813-RB 73..531 17..475 2295 100 Plus
cold-RA 1093 CG2813-RA 134..592 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 574778..575090 73..385 1565 100 Plus
2L 23513712 2L 575144..575233 386..475 450 100 Plus
2L 23513712 2L 574641..574698 17..74 290 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:48:58 has no hits.

BO04606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:57 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:27 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 119..591 9..481 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:28 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
cold-RA 134..592 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:58 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
CG2813-RA 119..591 9..481 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:05 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
cold-RA 134..592 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:05 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
2L 574780..575090 75..385 100 -> Plus
2L 575144..575233 386..477 97   Plus
2L 574641..574698 17..74 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:28 Download gff for BO04606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 574780..575090 75..385 100 -> Plus
arm_2L 575144..575233 386..477 97   Plus
arm_2L 574641..574698 17..74 100 -> Plus

BO04606.pep Sequence

Translation from 16 to 493

> BO04606.pep
MKSWEIAVVLVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEP
FENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTKEQCQSKRKRYMQLYCT
HIWYEDWACNECCKGDRCNYFVISGAPSRQGYGVCLTLLTALLGLGSWLI
PRSASFLDH

BO04606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
cold-PB 153 CG2813-PB 1..153 1..153 857 100 Plus
cold-PA 153 CG2813-PA 1..153 1..153 857 100 Plus