Clone Sequence Records
BO04607.3prime Sequence
973 bp (768 high quality bases) assembled on 2005-12-01
> BO04607.3prime
ATGGTCTAGAAAGCTTGCTTGCTGCAGCTCACTCAAGTCTGGAATGTTGC
AAGCGTAATCGTCGTTTGAGGTGGAGCTGGAGTCGTTGGTTAGCTCAAAG
CTGTTATCACCACTGGTGCCAGTAACCGTTGTCAGGCTGGAGTCATTGTT
TGAGCTCTGCTGCTCTGAGTTACTCAGATTTGGCAAGAAGGCATCTGGGT
ACTCTTCCTCTCCATCCTCCTCACCATCGTTATCATCGTCATCATCTTTG
CTCAAGCTGCTGGAGCTGCTTCTGCTCTCAGGACGCAAGGTCTCCCTGCT
GCCTTTACTTATATTCAAGGCGCTTATCATTGGCAAGTTGTTTGAGCTCG
CCGTTGATGTGGTAGCCGTTGAAGCTTTCGCTGGAGCGTGATTTGGTCGA
GAGTTTACATCTCCAGAATTATCAATTAAAAGAGTGATTCGCGGAATGTT
AGGCGGATCCGTTGAGCTAGTTCTGTTGCTTGGGTTGTCCGACACAGTTG
CCCGCAAATCACCAGAGTTCGAAATGAGTATAGACAGATCGGGGATGTTC
ATCGGTCGTGGCTGCAGCACTGGCTCCTGAATTTGTTCGCTGGGATTGAG
AATTGTCAGATTGGGCACATTCGGGATGGTCGTCGACGTAGTTCCGGTGC
CTGTCAATGTTGCAAAGTTGGAGTTAGTAGTACTCCTTTGCTGTCGTCGA
GGTGGCGCTATGGGAGGGGTGTTTCCTGACGGCTGGGGCACACTCTTGTC
CCGCCTCACAATGTCTTTTTCAAAGTTGTCCAGGTTCAGGCCAACGCTAC
CTTGAGCGTCTGCCCCAAGAGTGGCAGTGCTTGACTGGTATTTGAGGCTC
AGCCCCTCGTTGTCCACTTCCATTTCCTCTTCCAGCAGCTCAAGGCTTAT
GAGCGCACCGGGACCCGTCACAGGGCCGGGCAGGGGTGGACTCAATTTAG
GAAGTCTAGTGCCCCAAAAGTCT
BO04607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 490..1386 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 627..1574 | 968..19 | 4640 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4388458..4389381 | 943..19 | 4530 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:36:28 has no hits.
BO04607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:55 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-PA | 435..1389 | 18..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:41 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 435..1389 | 18..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:56 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 623..1574 | 19..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:59 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 623..1574 | 19..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:59 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4388459..4389384 | 13..942 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:56 Download gff for
BO04607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 214181..215106 | 13..942 | 99 | -> | Minus |
BO04607.5prime Sequence
918 bp (868 high quality bases) assembled on 2005-11-29
> BO04607.5prime
GAAGTTATCAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCG
TGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCT
CGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGC
CAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATAC
CCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTT
CCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCA
GATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGA
TGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACG
GTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGTGCGGC
AGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCGGCCTG
TTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGGAAATG
GAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACTGCCAC
TCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAACTTTG
AAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAGGAAAC
ACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACTAACTC
CAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCATCCCGA
ATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGGAGCCA
GTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTCATTTC
GAACTCTGGTGATTTGCG
BO04607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10520-PA | 1389 | tub-RA | 1..902 | 17..918 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..1090 | 16..918 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4387929..4388392 | 16..479 | 2320 | 100 | Plus |
| 3R | 32079331 | 3R | 4388458..4388897 | 479..918 | 2200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:36:43 has no hits.
BO04607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:56 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:42 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10520-PA | 1..902 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:33:58 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1090 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:05 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 185..1090 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:05 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387926..4388396 | 9..481 | 98 | -> | Plus |
| 3R | 4388461..4388897 | 482..918 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:33:58 Download gff for
BO04607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213648..214118 | 9..481 | 98 | -> | Plus |
| arm_3R | 214183..214619 | 482..918 | 100 | | Plus |
BO04607.complete Sequence
1420 bp (1420 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629808
> BO04607.complete
GAAGTTATCAGTCGACATGGCGTATGGCTGGAACGGATGCGGAATGGGCG
TGCAGGTGAACGGAAGCAACGGCGCCATAGGTTTATCCTCGAAGTATTCT
CGCAACACGGAGCTGCGACGCGTTGAGGACAATGACATTTACCGGCTTGC
CAAAATACTAGATGAGAACTCATGCTGGCGCAAATTGATGTCGATCATAC
CCAAGGGCATGGATGTGCAGGCCTGCAGCGGAGCCGGATGCTTGAATTTT
CCGGCGGAAATCAAAAAGGGATTTAAGTACACTGCGCAGGACGTGTTCCA
GATTGACGAGGCTGCAAACCGACTACCGCCGGACCAAAGCAAGTCGCAGA
TGATGATCGACGAGTGGAAGACCTCTGGCAAGCTCAACGAGCGGCCCACG
GTTGGGGTATTGCTCCAACTTCTGGTGCAGGCAGAGCTCTTCAGTGCGGC
AGACTTTGTGGCACTAGACTTCCTAAATGAGTCCACCCCTGCCCGGCCTG
TTGACGGTCCCGGTGCGCTCATAAGCCTTGAGCTGCTGGAAGAGGAAATG
GAAGTGGACAACGAGGGGCTGAGCCTCAAATACCAGTCAAGCACTGCCAC
TCTTGGGGCAGACGCTCAAGGTAGCGTTGGCCTGAACCTGGACAACTTTG
AAAAAGACATTGTGAGGCGGGACAAGAGTGTGCCCCAGCCGTCAGGAAAC
ACCCCTCCCATAGCGCCACCTCGACGACAGCAAAGGAGTACTACTAACTC
CAACTTTGCAACATTGACAGGCACCGGAACTACGTCGACGACCATCCCGA
ATGTGCCCAATCTGACAATTCTCAATCCCAGCGAACAAATTCAGGAGCCA
GTGCTGCAGCCACGACCGATGAACATCCCCGATCTGTCTATACTCATTTC
GAACTCTGGTGATTTGCGGGCAACTGTGTCGGACAACCCAAGCAACAGAA
CTAGCTCAACGGATCCGCCTAACATTCCGCGAATCACTCTTTTAATTGAT
AATTCTGGAGATGTAAACTCTCGACCAAATCACGCTCCAGCGAAAGCTTC
AACGGCTACCACATCAACGGCGAGCTCAAACAACTTGCCAATGATAAGCG
CCTTGAATATAAGTAAAGGCAGCAGGGAGACCTTGCGTCCTGAGAGCAGA
AGCAGCTCCAGCAGCTTGAGCAAAGATGATGACGATGATAACGATGGTGA
GGAGGATGGAGAGGAAGAGTACCCAGATGCCTTCTTGCCAAATCTGAGTA
ACTCAGAGCAGCAGAGCTCAAACAATGACTCCAGCCTGACAACGGTTACT
GGCACCAGTGGTGATAACAGCTTTGAGCTAACCAACGACTCCAGCTCCAC
CTCAAACGACGATTACGCTTGCAACATTCCAGACTTGAGTGAGCTGCAGC
AAGCAAGCTTTCTAGACCAT
BO04607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 1389 | CG10520-PC | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-RC | 2006 | CG10520-RC | 188..1574 | 16..1402 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4388458..4389381 | 479..1402 | 4620 | 100 | Plus |
| 3R | 32079331 | 3R | 4387929..4388392 | 16..479 | 2320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:06 has no hits.
BO04607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:37 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 1..1389 | 17..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:46 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 522..1907 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:12 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 189..1574 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:37 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RB | 518..1907 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:02 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tub-RC | 189..1574 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:02 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4387930..4388396 | 17..481 | 99 | -> | Plus |
| 3R | 4388461..4389381 | 482..1404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:12 Download gff for
BO04607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 213652..214118 | 17..481 | 99 | -> | Plus |
| arm_3R | 214183..215103 | 482..1404 | 99 | | Plus |
BO04607.pep Sequence
Translation from 16 to 1420
> BO04607.pep
MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDE
NSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAA
NRLPPDQSKSQMMIDEWKTSGKLNERPTVGVLLQLLVQAELFSAADFVAL
DFLNESTPARPVDGPGALISLELLEEEMEVDNEGLSLKYQSSTATLGADA
QGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPRRQQRSTTNSNFATL
TGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILISNSGDL
RATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTS
TASSNNLPMISALNISKGSRETLRPESRSSSSSLSKDDDDDNDGEEDGEE
EYPDAFLPNLSNSEQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDY
ACNIPDLSELQQASFLDH
BO04607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tub-PC | 462 | CG10520-PC | 1..462 | 1..462 | 2370 | 100 | Plus |
