Clone Sequence Records
BO04608.3prime Sequence
953 bp (892 high quality bases) assembled on 2005-12-01
> BO04608.3prime
ATGGTCTAGAAAGCTTGCATCCTTTTCGCCCTCGCGGCGTTTCTCGAAAA
GGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAGG
ACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACTT
GTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGCT
GAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACAC
GTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCGA
CAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCCT
TCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCAA
CTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTAG
GTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCCT
TTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGAG
TAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCAT
ACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCAA
GTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTTG
CTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAAA
AATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCCA
GCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCGCANGCAGC
TCCTTGCGCCGCCAGTCGCTTTTATGCAGGTAGTCCAAGGCCTCCGCCAA
GCTGTATAGATTTGTGTTGATGCGCACATATCGAGGATTGGGTTCTTTTC
GCT
BO04608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 365..1299 | 953..19 | 4656 | 99.8 | Minus |
CG5558-PB | 1281 | CG5558-RB | 396..1278 | 901..19 | 4396 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 427..1361 | 953..19 | 4664 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160727..19161226 | 447..946 | 2489 | 99.8 | Plus |
3R | 32079331 | 3R | 19160236..19160663 | 19..446 | 2140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:20:21 has no hits.
BO04608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:57 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 365..1302 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:44 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 365..1302 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:41 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 427..1366 | 11..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:35 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 427..1366 | 11..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:35 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160231..19160663 | 11..446 | 99 | <- | Plus |
3R | 19160727..19161230 | 447..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:41 Download gff for
BO04608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14985953..14986385 | 11..446 | 99 | <- | Plus |
arm_3R | 14986449..14986952 | 447..953 | 99 | | Plus |
BO04608.5prime Sequence
885 bp (788 high quality bases) assembled on 2005-11-29
> BO04608.5prime
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCANGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCT
BO04608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 1..869 | 17..885 | 4326 | 99.8 | Plus |
CG5558-PB | 1281 | CG5558-RB | 396..848 | 433..885 | 2246 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 63..931 | 17..885 | 4334 | 99.9 | Plus |
CG42359-RA | 966 | CG5558-RB | 63..435 | 17..389 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160729..19161226 | 885..388 | 2479 | 99.8 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 389..140 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162238 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:43:40 has no hits.
BO04608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:59 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:45 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:38 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 58..931 | 13..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:53 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 58..931 | 13..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:53 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160729..19161224 | 390..885 | 99 | <- | Minus |
3R | 19161790..19162039 | 140..389 | 100 | <- | Minus |
3R | 19162116..19162243 | 13..139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:38 Download gff for
BO04608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14987838..14987965 | 13..139 | 99 | | Minus |
arm_3R | 14986451..14986946 | 390..885 | 99 | <- | Minus |
arm_3R | 14987512..14987761 | 140..389 | 100 | <- | Minus |
BO04608.complete Sequence
1333 bp (1333 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629809
> BO04608.complete
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCTAACACCCGAACGCTT
TCCGGACGTAGAGTACATCCTGGTGGACCCTAGTTGCTCTGGCAGCGGAA
TGCAAAACCGCATGACCGTGTGCGACGAGCCGAAGGAGGACAAGCGGCTG
CAAAAGCTGCAGGGTTTGCAAATTAAGATCCTGTCGCACGCGATGGGCGC
CTTTCCGAACGTCAAACGCATTGCCTACTGCACGTGTTCGCTGTGGAAGG
AGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTCAGCTAAATCCATCCTTC
AAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAACAAGTGGCACAATGTGGG
CGACAAGGACTATCCCAATATTGGCAAGAACGTCCTGTATTGCCAGCCGG
ACAGTGATCTTACCGATGGCATCTTCCTGGCCCTTTTCGAGAAACGCCGC
GAGGGCGAAAAGGATGCAAGCTTTCTAGACCAT
BO04608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1302 | CG42358-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 63..1361 | 17..1315 | 6495 | 100 | Plus |
CG42359-RA | 966 | CG5558-RB | 63..435 | 17..389 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160727..19161226 | 887..388 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 19160236..19160663 | 1315..888 | 2140 | 100 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 389..140 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162238 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:28 has no hits.
BO04608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:05 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-RA | 1..1302 | 17..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:28 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 36..1344 | 13..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:29 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 63..1361 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:06 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-RA | 36..1344 | 13..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:44 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 63..1361 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:44 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160234..19160663 | 888..1317 | 99 | <- | Minus |
3R | 19160727..19161224 | 390..887 | 100 | <- | Minus |
3R | 19161790..19162039 | 140..389 | 100 | <- | Minus |
3R | 19162116..19162238 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:29 Download gff for
BO04608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14985956..14986385 | 888..1317 | 99 | <- | Minus |
arm_3R | 14986449..14986946 | 390..887 | 100 | <- | Minus |
arm_3R | 14987512..14987761 | 140..389 | 100 | <- | Minus |
arm_3R | 14987838..14987960 | 17..139 | 100 | | Minus |
BO04608.pep Sequence
Translation from 16 to 1333
> BO04608.pep
MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL
KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK
PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS
DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR
HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ
NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY
ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK
RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP
NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKDASFLDH
BO04608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-PA | 433 | CG5558-PA | 1..433 | 1..433 | 2279 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 417..657 | 209..438 | 159 | 24.6 | Plus |