Clone BO04608 Report

Search the DGRC for BO04608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG42358-RA
Protein status:BO04608.pep: validated full length
Sequenced Size:1333

Clone Sequence Records

BO04608.3prime Sequence

953 bp (892 high quality bases) assembled on 2005-12-01

> BO04608.3prime
ATGGTCTAGAAAGCTTGCATCCTTTTCGCCCTCGCGGCGTTTCTCGAAAA
GGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAGG
ACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACTT
GTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGCT
GAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACAC
GTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCGA
CAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCCT
TCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCAA
CTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTAG
GTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCCT
TTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGAG
TAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCAT
ACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCAA
GTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTTG
CTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAAA
AATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCCA
GCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCGCANGCAGC
TCCTTGCGCCGCCAGTCGCTTTTATGCAGGTAGTCCAAGGCCTCCGCCAA
GCTGTATAGATTTGTGTTGATGCGCACATATCGAGGATTGGGTTCTTTTC
GCT

BO04608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 365..1299 953..19 4656 99.8 Minus
CG5558-PB 1281 CG5558-RB 396..1278 901..19 4396 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 427..1361 953..19 4664 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160727..19161226 447..946 2489 99.8 Plus
3R 32079331 3R 19160236..19160663 19..446 2140 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:20:21 has no hits.

BO04608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:57 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 365..1302 18..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:44 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 365..1302 18..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:41 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 427..1366 11..953 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:35 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 427..1366 11..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:35 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160231..19160663 11..446 99 <- Plus
3R 19160727..19161230 447..953 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:41 Download gff for BO04608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985953..14986385 11..446 99 <- Plus
arm_3R 14986449..14986952 447..953 99   Plus

BO04608.5prime Sequence

885 bp (788 high quality bases) assembled on 2005-11-29

> BO04608.5prime
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCANGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCT

BO04608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 1..869 17..885 4326 99.8 Plus
CG5558-PB 1281 CG5558-RB 396..848 433..885 2246 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 63..931 17..885 4334 99.9 Plus
CG42359-RA 966 CG5558-RB 63..435 17..389 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160729..19161226 885..388 2479 99.8 Minus
3R 32079331 3R 19161790..19162039 389..140 1250 100 Minus
3R 32079331 3R 19162116..19162238 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:43:40 has no hits.

BO04608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:06:59 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:45 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:38 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 58..931 13..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:53 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 58..931 13..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:53 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160729..19161224 390..885 99 <- Minus
3R 19161790..19162039 140..389 100 <- Minus
3R 19162116..19162243 13..139 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:38 Download gff for BO04608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14987838..14987965 13..139 99   Minus
arm_3R 14986451..14986946 390..885 99 <- Minus
arm_3R 14987512..14987761 140..389 100 <- Minus

BO04608.complete Sequence

1333 bp (1333 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629809

> BO04608.complete
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCTAACACCCGAACGCTT
TCCGGACGTAGAGTACATCCTGGTGGACCCTAGTTGCTCTGGCAGCGGAA
TGCAAAACCGCATGACCGTGTGCGACGAGCCGAAGGAGGACAAGCGGCTG
CAAAAGCTGCAGGGTTTGCAAATTAAGATCCTGTCGCACGCGATGGGCGC
CTTTCCGAACGTCAAACGCATTGCCTACTGCACGTGTTCGCTGTGGAAGG
AGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTCAGCTAAATCCATCCTTC
AAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAACAAGTGGCACAATGTGGG
CGACAAGGACTATCCCAATATTGGCAAGAACGTCCTGTATTGCCAGCCGG
ACAGTGATCTTACCGATGGCATCTTCCTGGCCCTTTTCGAGAAACGCCGC
GAGGGCGAAAAGGATGCAAGCTTTCTAGACCAT

BO04608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1302 CG42358-PA 1..1299 17..1315 6495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 63..1361 17..1315 6495 100 Plus
CG42359-RA 966 CG5558-RB 63..435 17..389 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160727..19161226 887..388 2500 100 Minus
3R 32079331 3R 19160236..19160663 1315..888 2140 100 Minus
3R 32079331 3R 19161790..19162039 389..140 1250 100 Minus
3R 32079331 3R 19162116..19162238 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:05:28 has no hits.

BO04608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:05 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 1..1302 17..1316 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:28 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 36..1344 13..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:29 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 63..1361 17..1317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:06 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 36..1344 13..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:44 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 63..1361 17..1317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:44 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19160234..19160663 888..1317 99 <- Minus
3R 19160727..19161224 390..887 100 <- Minus
3R 19161790..19162039 140..389 100 <- Minus
3R 19162116..19162238 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:29 Download gff for BO04608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985956..14986385 888..1317 99 <- Minus
arm_3R 14986449..14986946 390..887 100 <- Minus
arm_3R 14987512..14987761 140..389 100 <- Minus
arm_3R 14987838..14987960 17..139 100   Minus

BO04608.pep Sequence

Translation from 16 to 1333

> BO04608.pep
MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL
KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK
PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS
DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR
HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ
NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY
ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK
RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP
NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKDASFLDH

BO04608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-PA 433 CG5558-PA 1..433 1..433 2279 100 Plus
CG8545-PA 891 CG8545-PA 417..657 209..438 159 24.6 Plus