Clone BO04612 Report

Search the DGRC for BO04612

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG3038-RA
Protein status:BO04612.pep: validated full length
Sequenced Size:1198

Clone Sequence Records

BO04612.3prime Sequence

948 bp (782 high quality bases) assembled on 2005-12-01

> BO04612.3prime
ATGGTCTAGAAAGCTTGCCCTGAGTCGCAACGCTTTTATTTCAGGAAAAC
CATGTTTAGGGGGTCGAGATTTGGCCGCCGCTAAACAGGTCTCTTTGAGC
GACTTACCAACCGGCCGTTTGACGCATTCATCAAAGTAGCACTTCTCAAC
GTTATGCAGAAATTCCACCAGTAGTCGGTCGTCACCGCCATTGGGTCCCA
CGGAGTACTCGCACTCATAGTTGTGCTTCTTGAGATCTCGCACACAGCAG
TCGATGAACTCTGCATTGGCAGAAAACCAGTCGTTGTGACGCTCAAGGGG
AATACCCAAACGAGTCCTTACTACTCCAGTCAACCAGGTGTCATCGATCC
AAAAAAATGACATCCTCTCCGCCTCCGCCACAATCCTCTCGGCTGTTGGC
ACGTTGGTCACGTAAAGCCAGCCCGACAAATAGGCGGGATATAAAGCCTG
AGGATACTCCTTTTTGCTAACGTACCACTTATTGGCTCGAAGGCGAATGG
GGGGCTTGGCATCCAGTACGTAGCCAGATAACAAAGTACTTGATGTGGCC
AGTCCAGGTTCGCGCACCTCGAGGGTCTCTAAATACCTGCGCAGATGAAA
CACATCGTAAATGATGTCATCATCCAGTTTAATGATAAACTTGGCCTGCT
TTTTGCACTCCTCAGAGACCCACTTTAATCCCATTACGTGTTTGTAGCTC
AGATTGCGATAGTCCTCGATGAAATTCCCCTGGAGAAGGTCCCCGAAACG
ATTCTGTTCGCTGGCCAGTTGATCCTGGCTTATAAAATGCTCTCTTGAAG
GCAGGGCTGCCAAGAGAAAAACTCTTCGCAGGCCCATTTTCTCCAGTTTG
CTTTGGGGAATTGCCTGTCGGTGAGCTGATCGCAAGGCATCGTGTCCGGC
ATACGAAAGTACTATTAAAACGGCTAAAAGTTCTCTTTTTTGCTTTCG

BO04612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PB 1077 CG3038-RB 186..1074 907..19 4395 99.7 Minus
CG3038-PA 1167 CG3038-RA 276..1164 907..19 4395 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1731 CG3038-RA 421..1350 948..19 4530 99.2 Minus
CG3038-RB 1630 CG3038-RB 320..1249 948..19 4530 99.2 Minus
CG3038-RC 1751 CG3038-RC 696..1263 586..19 2840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244442..245350 19..927 4470 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 15:19:12 has no hits.

BO04612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:01 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PB 145..1077 16..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:50 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PA 235..1167 16..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:19 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RB 320..1249 19..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:53 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RB 320..1249 19..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:53 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
X 244442..245345 19..922 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:19 Download gff for BO04612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 138475..139378 19..922 99 -> Plus

BO04612.5prime Sequence

891 bp (816 high quality bases) assembled on 2005-11-29

> BO04612.5prime
GAAGTTATCAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTA
TTTTGTCGCTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAAT
CACTTGAGGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTT
ACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTA
ATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGT
CGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGC
CGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCA
AACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCT
TCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCG
TTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGA
GCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAG
CAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTT
TCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGG
CCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCC
ATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCA
GGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGC
CAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGG
ATCGATGACACCTGGGTGACTGGAGTAGTAAGGACTCGTTT

BO04612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PA 1167 CG3038-RA 1..875 17..891 4350 99.8 Plus
CG3038-PB 1077 CG3038-RB 3..785 109..891 3890 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1731 CG3038-RA 187..1061 17..891 4360 99.9 Plus
CG3038-RB 1630 CG3038-RB 178..960 109..891 3900 99.9 Plus
CG3038-RC 1751 CG3038-RC 187..697 17..527 2555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244731..245350 891..272 3085 99.8 Minus
X 23542271 X 245412..245670 275..17 1295 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:08:25 has no hits.

BO04612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:02 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:51 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-PA 1..875 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:20 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 181..1061 10..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:17 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 181..1061 10..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:17 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
X 244731..245346 276..891 99 <- Minus
X 245412..245676 10..275 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:20 Download gff for BO04612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 138764..139379 276..891 99 <- Minus
arm_X 139445..139709 10..275 98   Minus

BO04612.complete Sequence

1198 bp (1198 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629810

> BO04612.complete
GAAGTTATCAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTA
TTTTGTCGCTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAAT
CACTTGAGGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTT
ACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTA
ATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGT
CGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGC
CGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCA
AACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCT
TCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCG
TTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGA
GCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAG
CAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTT
TCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGG
CCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCC
ATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCA
GGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGC
CAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGG
ATCGATGACACCTGGTTGACTGGAGTAGTAAGGACTCGTTTGGGTATTCC
CCTTGAGCGTCACAACGACTGGTTTTCTGCCAATGCAGAGTTCATCGACT
GCTGTGTGCGAGATCTCAAGAAGCACAACTATGAGTGCGAGTACTCCGTG
GGACCCAATGGCGGTGACGACCGACTACTGGTGGAATTTCTGCATAACGT
TGAGAAGTGCTACTTTGATGAATGCGTCAAACGGCCGGTTGGTAAGTCGC
TCAAAGAGACCTGTTTAGCGGCGGCCAAATCTCGACCCCCTAAACATGGT
TTTCCTGAAATAAAAGCGTTGCGACTCAGGGCAAGCTTTCTAGACCAT

BO04612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1167 CG3038-PA 1..1164 17..1180 5820 100 Plus
CG3038-RB 1077 CG3038-PB 3..1074 109..1180 5360 100 Plus
CG3038-RC 1080 CG3038-PC 510..1077 613..1180 2840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-RA 1731 CG3038-RA 187..1350 17..1180 5820 100 Plus
CG3038-RB 1630 CG3038-RB 178..1249 109..1180 5360 100 Plus
CG3038-RC 1751 CG3038-RC 696..1263 613..1180 2840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 244442..245350 1180..272 4545 100 Minus
X 23542271 X 245412..245670 275..17 1295 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:56:29 has no hits.

BO04612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:09 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 1..1167 17..1183 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:11 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 158..1327 10..1180 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:20 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 187..1350 17..1182 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:09 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 158..1327 10..1180 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:13 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
CG3038-RA 187..1350 17..1182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:13 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
X 244438..245346 276..1182 99 <- Minus
X 245412..245670 17..275 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:20 Download gff for BO04612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 138471..139379 276..1182 99 <- Minus
arm_X 139445..139703 17..275 100   Minus

BO04612.pep Sequence

Translation from 16 to 1198

> BO04612.pep
MRMRGRRLLPIILSLLLIVLLSLCYFSNHLRDSSQSRKNGFLLHLPLETK
RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTSYAGHDAL
RSAHRQAIPQSKLEEMGLRRVFLLAALPSREHFISQDQLASEQNRFGDLL
QGNFIEDYRNLSYKHVMGLKWVSEECKKQAKFIIKLDDDIIYDVFHLRRY
LETLEVREPGLATSSTLLSGYVLDAKPPIRLRANKWYVSKKEYPQALYPA
YLSGWLYVTNVPTAERIVAEAERMSFFWIDDTWLTGVVRTRLGIPLERHN
DWFSANAEFIDCCVRDLKKHNYECEYSVGPNGGDDRLLVEFLHNVEKCYF
DECVKRPVGKSLKETCLAAAKSRPPKHGFPEIKALRLRASFLDH

BO04612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3038-PA 388 CG3038-PA 1..388 1..388 2040 100 Plus
CG3038-PB 358 CG3038-PB 2..358 32..388 1888 100 Plus
CG3038-PC 359 CG3038-PC 1..359 1..388 1844 92.5 Plus
CG11357-PD 434 CG11357-PD 99..341 46..293 319 30.3 Plus
CG11357-PC 434 CG11357-PC 99..341 46..293 319 30.3 Plus