Clone Sequence Records
BO04612.3prime Sequence
948 bp (782 high quality bases) assembled on 2005-12-01
> BO04612.3prime
ATGGTCTAGAAAGCTTGCCCTGAGTCGCAACGCTTTTATTTCAGGAAAAC
CATGTTTAGGGGGTCGAGATTTGGCCGCCGCTAAACAGGTCTCTTTGAGC
GACTTACCAACCGGCCGTTTGACGCATTCATCAAAGTAGCACTTCTCAAC
GTTATGCAGAAATTCCACCAGTAGTCGGTCGTCACCGCCATTGGGTCCCA
CGGAGTACTCGCACTCATAGTTGTGCTTCTTGAGATCTCGCACACAGCAG
TCGATGAACTCTGCATTGGCAGAAAACCAGTCGTTGTGACGCTCAAGGGG
AATACCCAAACGAGTCCTTACTACTCCAGTCAACCAGGTGTCATCGATCC
AAAAAAATGACATCCTCTCCGCCTCCGCCACAATCCTCTCGGCTGTTGGC
ACGTTGGTCACGTAAAGCCAGCCCGACAAATAGGCGGGATATAAAGCCTG
AGGATACTCCTTTTTGCTAACGTACCACTTATTGGCTCGAAGGCGAATGG
GGGGCTTGGCATCCAGTACGTAGCCAGATAACAAAGTACTTGATGTGGCC
AGTCCAGGTTCGCGCACCTCGAGGGTCTCTAAATACCTGCGCAGATGAAA
CACATCGTAAATGATGTCATCATCCAGTTTAATGATAAACTTGGCCTGCT
TTTTGCACTCCTCAGAGACCCACTTTAATCCCATTACGTGTTTGTAGCTC
AGATTGCGATAGTCCTCGATGAAATTCCCCTGGAGAAGGTCCCCGAAACG
ATTCTGTTCGCTGGCCAGTTGATCCTGGCTTATAAAATGCTCTCTTGAAG
GCAGGGCTGCCAAGAGAAAAACTCTTCGCAGGCCCATTTTCTCCAGTTTG
CTTTGGGGAATTGCCTGTCGGTGAGCTGATCGCAAGGCATCGTGTCCGGC
ATACGAAAGTACTATTAAAACGGCTAAAAGTTCTCTTTTTTGCTTTCG
BO04612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-PB | 1077 | CG3038-RB | 186..1074 | 907..19 | 4395 | 99.7 | Minus |
CG3038-PA | 1167 | CG3038-RA | 276..1164 | 907..19 | 4395 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1731 | CG3038-RA | 421..1350 | 948..19 | 4530 | 99.2 | Minus |
CG3038-RB | 1630 | CG3038-RB | 320..1249 | 948..19 | 4530 | 99.2 | Minus |
CG3038-RC | 1751 | CG3038-RC | 696..1263 | 586..19 | 2840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 244442..245350 | 19..927 | 4470 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:19:12 has no hits.
BO04612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:01 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PB | 145..1077 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:50 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PA | 235..1167 | 16..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:19 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RB | 320..1249 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:53 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RB | 320..1249 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:53 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 244442..245345 | 19..922 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:19 Download gff for
BO04612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 138475..139378 | 19..922 | 99 | -> | Plus |
BO04612.5prime Sequence
891 bp (816 high quality bases) assembled on 2005-11-29
> BO04612.5prime
GAAGTTATCAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTA
TTTTGTCGCTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAAT
CACTTGAGGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTT
ACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTA
ATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGT
CGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGC
CGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCA
AACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCT
TCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCG
TTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGA
GCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAG
CAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTT
TCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGG
CCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCC
ATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCA
GGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGC
CAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGG
ATCGATGACACCTGGGTGACTGGAGTAGTAAGGACTCGTTT
BO04612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-PA | 1167 | CG3038-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
CG3038-PB | 1077 | CG3038-RB | 3..785 | 109..891 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1731 | CG3038-RA | 187..1061 | 17..891 | 4360 | 99.9 | Plus |
CG3038-RB | 1630 | CG3038-RB | 178..960 | 109..891 | 3900 | 99.9 | Plus |
CG3038-RC | 1751 | CG3038-RC | 187..697 | 17..527 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 244731..245350 | 891..272 | 3085 | 99.8 | Minus |
X | 23542271 | X | 245412..245670 | 275..17 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:25 has no hits.
BO04612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:02 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:51 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:20 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 181..1061 | 10..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:17 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 181..1061 | 10..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:17 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 244731..245346 | 276..891 | 99 | <- | Minus |
X | 245412..245676 | 10..275 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:20 Download gff for
BO04612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 138764..139379 | 276..891 | 99 | <- | Minus |
arm_X | 139445..139709 | 10..275 | 98 | | Minus |
BO04612.complete Sequence
1198 bp (1198 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629810
> BO04612.complete
GAAGTTATCAGTCGACATGCGCATGCGCGGACGAAGATTGCTTCCGATTA
TTTTGTCGCTTCTTTTGATCGTCCTACTGAGTCTCTGTTACTTTTCGAAT
CACTTGAGGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCACTT
ACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAGTA
ATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGTGT
CGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTATGC
CGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAGCA
AACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGCCT
TCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAATCG
TTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCTGA
GCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAAAG
CAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTGTT
TCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACTGG
CCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCCCC
ATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCTCA
GGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGTGC
CAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTTGG
ATCGATGACACCTGGTTGACTGGAGTAGTAAGGACTCGTTTGGGTATTCC
CCTTGAGCGTCACAACGACTGGTTTTCTGCCAATGCAGAGTTCATCGACT
GCTGTGTGCGAGATCTCAAGAAGCACAACTATGAGTGCGAGTACTCCGTG
GGACCCAATGGCGGTGACGACCGACTACTGGTGGAATTTCTGCATAACGT
TGAGAAGTGCTACTTTGATGAATGCGTCAAACGGCCGGTTGGTAAGTCGC
TCAAAGAGACCTGTTTAGCGGCGGCCAAATCTCGACCCCCTAAACATGGT
TTTCCTGAAATAAAAGCGTTGCGACTCAGGGCAAGCTTTCTAGACCAT
BO04612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1167 | CG3038-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
CG3038-RB | 1077 | CG3038-PB | 3..1074 | 109..1180 | 5360 | 100 | Plus |
CG3038-RC | 1080 | CG3038-PC | 510..1077 | 613..1180 | 2840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-RA | 1731 | CG3038-RA | 187..1350 | 17..1180 | 5820 | 100 | Plus |
CG3038-RB | 1630 | CG3038-RB | 178..1249 | 109..1180 | 5360 | 100 | Plus |
CG3038-RC | 1751 | CG3038-RC | 696..1263 | 613..1180 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 244442..245350 | 1180..272 | 4545 | 100 | Minus |
X | 23542271 | X | 245412..245670 | 275..17 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:29 has no hits.
BO04612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:09 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 1..1167 | 17..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:11 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 158..1327 | 10..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:20 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 187..1350 | 17..1182 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:09 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 158..1327 | 10..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:13 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3038-RA | 187..1350 | 17..1182 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:13 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 244438..245346 | 276..1182 | 99 | <- | Minus |
X | 245412..245670 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:20 Download gff for
BO04612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 138471..139379 | 276..1182 | 99 | <- | Minus |
arm_X | 139445..139703 | 17..275 | 100 | | Minus |
BO04612.pep Sequence
Translation from 16 to 1198
> BO04612.pep
MRMRGRRLLPIILSLLLIVLLSLCYFSNHLRDSSQSRKNGFLLHLPLETK
RNPSNPNTPLSNLLNLTDFHYLLASNVCRKAKRELLAVLIVTSYAGHDAL
RSAHRQAIPQSKLEEMGLRRVFLLAALPSREHFISQDQLASEQNRFGDLL
QGNFIEDYRNLSYKHVMGLKWVSEECKKQAKFIIKLDDDIIYDVFHLRRY
LETLEVREPGLATSSTLLSGYVLDAKPPIRLRANKWYVSKKEYPQALYPA
YLSGWLYVTNVPTAERIVAEAERMSFFWIDDTWLTGVVRTRLGIPLERHN
DWFSANAEFIDCCVRDLKKHNYECEYSVGPNGGDDRLLVEFLHNVEKCYF
DECVKRPVGKSLKETCLAAAKSRPPKHGFPEIKALRLRASFLDH
BO04612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3038-PA | 388 | CG3038-PA | 1..388 | 1..388 | 2040 | 100 | Plus |
CG3038-PB | 358 | CG3038-PB | 2..358 | 32..388 | 1888 | 100 | Plus |
CG3038-PC | 359 | CG3038-PC | 1..359 | 1..388 | 1844 | 92.5 | Plus |
CG11357-PD | 434 | CG11357-PD | 99..341 | 46..293 | 319 | 30.3 | Plus |
CG11357-PC | 434 | CG11357-PC | 99..341 | 46..293 | 319 | 30.3 | Plus |