Clone Sequence Records
BO04613.3prime Sequence
943 bp (875 high quality bases) assembled on 2005-12-01
> BO04613.3prime
ATGGTCTAGAAAGCTTGCATGAGTAACTTTGCAGGATGCTTGGTGGCGTC
TCTTATCACGTCGCTGGCATTCAACGCTGCAGTAGGACGCAGTAAAGCAG
CAGTTAAAAACGGCCTCATCCAGGCAATGGTAGCACCATTGCTTCCTTTT
CACTTCGGCCAGCTTCCTTTGCGTGGCCGAGAGCTCTCTTCGGCAATTTA
GCAGATCGTTATGCGCCTGCAGTATTTCGGCGGTTAGACTATCATATGCT
ACGGAGTCAGGAATCCCACGAATGGGCACCGGCGATGAGGTATTCGAAGT
GGTGTTATTAAGCCGTCGATTCTTTGCAGCGCCGGGAGTGGCTGGAGTCG
GCGGGCGTCCTCGTTTGCCGGACGCACTCGTTTCCGTTGACTCCGTGCAG
TGGGATAGAGCCACCTTAATGAGATTCTCGGCAACGGTGGGATCTGCATG
GAAGCCGAATAGCGAGGCGGAATAGTGGGACAACATCATGTGACACTGCA
GTTCTTTTATCGCAGCGCTCAGAGCTCGGGAGTTCCGTGGTTTGATATGC
GACTGAATGTCCGACTCGATGGGTGTAATATCACGTTCTGAGATGAGGGC
CCGGGAATGAGTGCCACCGAAGAAGCGGACGTCGTACTTGATGGGCTGAC
GCTTGGAGACGCTCATCACCTTTGCAGGCCACGGTGGTGAGCCCACCTGC
TTGGCAAATACCAACTCGTGCCGCTGAAGACATGGCTTGGCGAACCAGAG
ATCCGACAGGCTGGCCTCGTTGGAATACCTATAGCAGTCGGGGCAACGAC
GGATTTCGCGAATGTCGTGCGTCACATCTCTCATCAGCCACTTGGTGGCA
TTGTACTCAACGCTCTTTTGCCCAAAGAACACGGCCATGTTGTGCTGCAG
ATCGAGCAGATCCATTANGAATTTCTGTAGGTACGTATACTTC
BO04613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-PA | 1827 | CG8569-RA | 920..1824 | 923..19 | 4506 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-RA | 2334 | CG8569-RA | 967..1891 | 943..19 | 4569 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12520529..12521181 | 671..19 | 3265 | 100 | Minus |
| 2R | 25286936 | 2R | 12520197..12520472 | 943..668 | 1309 | 98.2 | Minus |
Blast to na_te.dros performed 2015-02-13 13:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3719..3767 | 427..379 | 119 | 71.4 | Minus |
BO04613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:03 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-PA | 900..1827 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:52 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-PA | 900..1827 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:29 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 967..1897 | 11..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:46 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 967..1897 | 11..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:46 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12520197..12520470 | 670..943 | 98 | -> | Minus |
| 2R | 12520531..12521187 | 11..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:29 Download gff for
BO04613.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8407702..8407975 | 670..943 | 98 | -> | Minus |
| arm_2R | 8408036..8408692 | 11..669 | 99 | | Minus |
BO04613.5prime Sequence
929 bp (862 high quality bases) assembled on 2005-12-01
> BO04613.5prime
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCAAGCATTGGAACGAACGCGACAAGGCGCTGGTT
AAGCGGCTACTCTTTCAGACAAAGATTTTGGGTCTGGGCGACATCGAGCG
CAACATAGCGGCGGCGAAGTATACGTACC
BO04613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-PA | 1827 | CG8569-RA | 1..913 | 17..929 | 4515 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-RA | 2334 | CG8569-RA | 68..980 | 17..929 | 4535 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12519410..12520210 | 129..929 | 3975 | 99.8 | Plus |
| 2R | 25286936 | 2R | 12519233..12519347 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:09:29 has no hits.
BO04613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:04 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:54 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-PA | 1..913 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:54 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 65..980 | 14..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:24:32 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 65..980 | 14..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:24:32 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12519230..12519347 | 14..131 | 99 | -> | Plus |
| 2R | 12519413..12520210 | 132..929 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:54 Download gff for
BO04613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8406735..8406852 | 14..131 | 99 | -> | Plus |
| arm_2R | 8406918..8407715 | 132..929 | 99 | | Plus |
BO04613.complete Sequence
1858 bp (1858 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629811
> BO04613.complete
GAAGTTATCAGTCGACATGGCCAGCGATATTCCACCTTCAGCCATCCGTA
TTTGGATGGACAAGCTGAAAAAGGGCGTTGGGCAGCCGGCGACAGTCCTA
GAGCGTTCCCTGCTCAATTTAATGAGTGCAGAAGCAGCCAGTTTATCGGT
GAAAAATGCCACGGAGCGAGGCATACTGGTGGCCAGAGCAGGCGGCGGAC
GGTCCAAGCGTCTGGCCCTCGCCTTTTGTCAAAAAGTAAGCCGGCTGCCC
AGCTCACCAATTGATCCGTTCTGCTTCGAGTGCCATTTGCCCGGAGCCGT
TAAGAAATGCATATCCTGCCATCGCTCCTTCCACGAGAATTGCCAGCGAC
AGGACCCGGAGAAGCCCAATTATTCAGTGCCCTCGGACAAGGGCCAACCT
TACCAGTTTCCCGTCAACGAATTGGACAATCAGCCCCTGAATAACACTCA
GAACTTGGAGACTCCCCAAACGCCAACGCCCCTGCTCGATCATAATAGCA
ACATCAATCAGACTTTGCTAGCCACTACGGATTTCCTGAAGCACGAGAAC
ATCGAGTGGGACGACGACGTCTTCTTTGTGTGCGAACAAAAGGGCGCGCG
CCAGCGAAAGCTGCCCAGGATCAAGGACGAACTACAAAGCAGTTTGGATA
GCGATGAGGGAAGCGATCTGGAGCGCTGCACCCACTGCCGTTTGCTCGCC
CTGGCCGCTCTCCACAACCCACCGCAACTCGACAAGCAAGAGCTGGGCTG
CCTATTGAAGTACTCCTGGGACCAGCATCACTCCTGGATCTCCATGGATG
TGGCCAAGTACATGGCCAAGCATTGGAACGAACGCGACAAGGCGCTGGTT
AAGCGGCTACTCTTCAAGACAAAGATTTTGGGTCTGGGCGACATCGAGCG
CAACATAGCGGCGGCGAAGTATACGTACCTAACAGAATTCCTAATGGATC
TGCTCGATCTGCAGCACAACATGGCCGTGTTCTTTGGGCAAAAGAGCGTT
GAGTACAATGCCACCAAGTGGCTGATGAGAGATGTGACGCACGACATTCG
CGAAATCCGTCGTTGCCCCGACTGCTATAGGTATTCCAACGAGGCCAGCC
TGTCGGATCTCTGGTTCGCCAAGCCATGTCTTCAGCGGCACGAGTTGGTA
TTTGCCAAGCAGGTGGGCTCACCACCGTGGCCTGCAAAGGTGATGAGCGT
CTCCAAGCGTCAGCCCATCAAGTACGACGTCCGCTTCTTCGGTGGCACTC
ATTCCCGGGCCCTCATCTCAGAACGTGATATTACACCCATCGAGTCGGAC
ATTCAGTCGCATATCAAACCACGGAACTCCCGAGCTCTGAGCGCTGCGAT
AAAAGAACTGCAGTGTCACATGATGTTGTCCCACTATTCCGCCTCGCTAT
TCGGCTTCCATGCAGATCCCACCGTTGCCGAGAATCTCATTAAGGTGGCT
CTATCCCACTGCACGGAGTCAACGGAAACGAGTGCGTCCGGCAAACGAGG
ACGCCCGCCGACTCCAGCCACTCCCGGCGCTGCAAAGAATCGACGGCTTA
ATAACACCACTTCGAATACCTCATCGCCGGTGCCCATTCGTGGGATTCCT
GACTCCGTAGCATATGATAGTCTAACCGCCGAAATACTGCAGGCGCATAA
CGATCTGCTAAATTGCCGAAGAGAGCTCTCGGCCACGCAAAGGAAGCTGG
CCGAAGTGAAAAGGAAGCAATGGTGCTACCATTGCCTGGATGAGGCCGTT
TTTAACTGCTGCTTTACTGCGTCCTACTGCAGCGTTGAATGCCAGCGACG
TGATAAGAGACGCCACCAAGCATCCTGCAAAGTTACTCATGCAAGCTTTC
TAGACCAT
BO04613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-RA | 1827 | CG8569-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-RA | 2334 | CG8569-RA | 68..1891 | 17..1840 | 9120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12519410..12520472 | 129..1191 | 5315 | 100 | Plus |
| 2R | 25286936 | 2R | 12520529..12521181 | 1188..1840 | 3265 | 100 | Plus |
| 2R | 25286936 | 2R | 12519233..12519347 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3719..3767 | 1432..1480 | 119 | 71.4 | Plus |
BO04613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:17 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 1..1827 | 17..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:24 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 82..1914 | 14..1848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:21 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 68..1891 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:18 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 82..1914 | 14..1848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:49 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8569-RA | 68..1891 | 17..1842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:49 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12519233..12519347 | 17..131 | 100 | -> | Plus |
| 2R | 12519413..12520470 | 132..1189 | 100 | -> | Plus |
| 2R | 12520531..12521181 | 1190..1842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:21 Download gff for
BO04613.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8406738..8406852 | 17..131 | 100 | -> | Plus |
| arm_2R | 8406918..8407975 | 132..1189 | 100 | -> | Plus |
| arm_2R | 8408036..8408686 | 1190..1842 | 99 | | Plus |
BO04613.pep Sequence
Translation from 16 to 1858
> BO04613.pep
MASDIPPSAIRIWMDKLKKGVGQPATVLERSLLNLMSAEAASLSVKNATE
RGILVARAGGGRSKRLALAFCQKVSRLPSSPIDPFCFECHLPGAVKKCIS
CHRSFHENCQRQDPEKPNYSVPSDKGQPYQFPVNELDNQPLNNTQNLETP
QTPTPLLDHNSNINQTLLATTDFLKHENIEWDDDVFFVCEQKGARQRKLP
RIKDELQSSLDSDEGSDLERCTHCRLLALAALHNPPQLDKQELGCLLKYS
WDQHHSWISMDVAKYMAKHWNERDKALVKRLLFKTKILGLGDIERNIAAA
KYTYLTEFLMDLLDLQHNMAVFFGQKSVEYNATKWLMRDVTHDIREIRRC
PDCYRYSNEASLSDLWFAKPCLQRHELVFAKQVGSPPWPAKVMSVSKRQP
IKYDVRFFGGTHSRALISERDITPIESDIQSHIKPRNSRALSAAIKELQC
HMMLSHYSASLFGFHADPTVAENLIKVALSHCTESTETSASGKRGRPPTP
ATPGAAKNRRLNNTTSNTSSPVPIRGIPDSVAYDSLTAEILQAHNDLLNC
RRELSATQRKLAEVKRKQWCYHCLDEAVFNCCFTASYCSVECQRRDKRRH
QASCKVTHASFLDH
BO04613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8569-PA | 608 | CG8569-PA | 1..608 | 1..608 | 3243 | 100 | Plus |
| CG1815-PB | 1121 | CG1815-PB | 459..618 | 302..468 | 192 | 31 | Plus |
| CG1815-PC | 1664 | CG1815-PC | 459..618 | 302..468 | 192 | 31 | Plus |
