Clone BO04614 Report

Search the DGRC for BO04614

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptaur-RA
Protein status:BO04614.pep: validated full length
Sequenced Size:1267

Clone Sequence Records

BO04614.3prime Sequence

935 bp (843 high quality bases) assembled on 2005-12-01

> BO04614.3prime
ATGGTCTAGAAAGCTTGCCTGCGTGTGCGCCAGGATCCAAGGATGCACCA
TCACCTGATCCAGCGGTAGGCGGTGCTGCGGATTAAGGACCAGCAGCTTG
GAAATGAGATGGGATGCTGCCTTGGAAATGTGCTCCGGCAGTTTGTAGTC
CACCTTGAGAATCTTCTTGTAGGTCTCGTCATAGTTCTTCGAGTAGAAGG
GAGCGTGGCCCACTAGCAGCTCAAAGCAGAGCACACCCAGGCTCCATAGA
TCCACGTTTTTCGTGTGCGGCTTGCCCTGAACCATTTCGGGTGGCAAGTA
GTCGACAGTGCCGCACAGTGTCATGCGCATGGAGTTCGGCTCGTGCACGG
ACCAACCGAAGTCGGCGATCTTCAGGACGCCCTTGTGCCCGAGCAGCAAG
TTCTCCGGCTTGATGTCCCTGTGTATGATGTCCCGCTCATGCAGATAGAG
CAGCGCCGAGCACAACGCCTGAATATAGGTGGCCGACTGGCGTTCATCGA
AACGTTTCATCGGCTGTGCCTGCAAGGCGTTGAAAAGCGTTCCTTGTGGC
GCATACTCCAAGATCAGATATATGCGCACGTCGTCGTGAAAGTAGGCATA
CAGACGCAGGATATGCGGATGACGTAGGTGCGATTGTATCTCGATCTCAC
GACGCACCTGGTGCTCCACATTGGACTCGCCAATCTGGCGCTTAAAGAGC
ACTTTTAGGGCCACCACGAACTGGGATTCCTTTTCCCGCGCCAAATAAAC
GTTGCCAAACTTGCCCCGTCCCAGCAGGCGACCAATATCAAAGTTGTTGA
GCTCCCAGGTCTTCTTCGGCTTCTGGGGCTGGGTTTCAGTCTTGGTTTTC
TCTTTTTCAGCGGAGCTGCTGGCCGCACCCAGTTCCTTGGAGGATTCAGA
GCTCGCAGCAGTGGGTTTCTGCTTGGAAAGTGACT

BO04614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3068-PA 1236 aur-RA 317..1233 935..19 4585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1577 CG3068-RA 485..1401 935..19 4585 100 Minus
aurB-RA 1183 CG6620-RA 655..785 411..281 180 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11963832..11964650 837..19 4095 100 Minus
3R 32079331 3R 11963672..11963770 935..837 495 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:38:12 has no hits.

BO04614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:05 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
aur-PA 317..1236 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:56 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3068-PA 317..1236 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:24 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
aur-RA 485..1405 15..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:17 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
aurA-RA 485..1405 15..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:17 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11963672..11963770 837..935 100 -> Minus
3R 11963833..11964654 15..836 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:24 Download gff for BO04614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7789394..7789492 837..935 100 -> Minus
arm_3R 7789555..7790376 15..836 99   Minus

BO04614.5prime Sequence

875 bp (757 high quality bases) assembled on 2005-11-29

> BO04614.5prime
GAAGTTATCAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCA
AGGAAAATGCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAAT
ATGCAAAAGAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGC
TCCAGCTAGCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGC
CAGGCCTAGGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTC
CAAAAACCCATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGC
TCCGGCTCCAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGA
AACCCACTGCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGC
AGCTCCGCTGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCC
GAAGAAGACCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGAC
GGGGCAAGTTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTC
GTGGTGGCCCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGT
GGAGCACCAGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATC
CGCATATCCTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATAT
CTGATCTTGGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGC
ACAGCCGATGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAGG
CGTTGTGCTCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGG
GACATCAAGCCGGAGAACTTGCTGC

BO04614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3068-PA 1236 aur-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1577 CG3068-RA 168..1027 16..875 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11963832..11964276 431..875 2225 100 Plus
3R 32079331 3R 11963468..11963770 129..431 1515 100 Plus
3R 32079331 3R 11963291..11963405 16..130 575 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:29:51 has no hits.

BO04614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:06 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
aur-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:58 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3068-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:08 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
aur-RA 165..1027 13..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:58 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
aurA-RA 165..1027 13..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:58 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11963288..11963405 13..130 99 -> Plus
3R 11963470..11963770 131..431 100 -> Plus
3R 11963833..11964276 432..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:08 Download gff for BO04614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7789010..7789127 13..130 99 -> Plus
arm_3R 7789192..7789492 131..431 100 -> Plus
arm_3R 7789555..7789998 432..875 100   Plus

BO04614.complete Sequence

1267 bp (1267 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629812

> BO04614.complete
GAAGTTATCAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCA
AGGAAAATGCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAAT
ATGCAAAAGAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGC
TCCAGCTAGCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGC
CAGGCCTAGGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTC
CAAAAACCCATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGC
TCCGGCTCCAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGA
AACCCACTGCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGC
AGCTCCGCTGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCC
GAAGAAGACCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGAC
GGGGCAAGTTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTC
GTGGTGGCCCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGT
GGAGCACCAGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATC
CGCATATCCTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATAT
CTGATCTTGGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGC
ACAGCCGATGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAGG
CGTTGTGCTCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGG
GACATCAAGCCGGAGAACTTGCTGCTCGGGCACAAGGGCGTCCTGAAGAT
CGCCGACTTCGGTTGGTCCGTGCACGAGCCGAACTCCATGCGCATGACAC
TGTGCGGCACTGTCGACTACTTGCCACCCGAAATGGTTCAGGGCAAGCCG
CACACGAAAAACGTGGATCTATGGAGCCTGGGTGTGCTCTGCTTTGAGCT
GCTAGTGGGCCACGCTCCCTTCTACTCGAAGAACTATGACGAGACCTACA
AGAAGATTCTCAAGGTGGACTACAAACTGCCGGAGCACATTTCCAAGGCA
GCATCCCATCTCATTTCCAAGCTGCTGGTCCTTAATCCGCAGCACCGCCT
ACCGCTGGATCAGGTGATGGTGCATCCTTGGATCCTGGCGCACACGCAGG
CAAGCTTTCTAGACCAT

BO04614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1236 CG3068-PA 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-RA 1577 CG3068-RA 168..1401 16..1249 6170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11963832..11964650 431..1249 4095 100 Plus
3R 32079331 3R 11963468..11963770 129..431 1515 100 Plus
3R 32079331 3R 11963291..11963405 16..130 575 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:25:48 has no hits.

BO04614.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:48 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
aur-RA 1..1236 17..1252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:44 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
aur-RA 159..1399 13..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:17 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
aur-RA 169..1401 17..1251 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:48 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
aur-RA 159..1399 13..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:17 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
aurA-RA 169..1401 17..1251 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:17 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11963470..11963770 131..431 100 -> Plus
3R 11963292..11963405 17..130 100 -> Plus
3R 11963833..11964650 432..1251 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:17 Download gff for BO04614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7789014..7789127 17..130 100 -> Plus
arm_3R 7789192..7789492 131..431 100 -> Plus
arm_3R 7789555..7790372 432..1251 99   Plus

BO04614.pep Sequence

Translation from 16 to 1267

> BO04614.pep
MSHPSDHVLRPKENAPHRMPEKSAAVHNMQKNLLLGKKPNSENMAPASKP
LPGSSGALIRKPGLGGSNSIASSEGNNFQKPMVPSVKKTTSEFAAPAPVA
PIKKPESLSKQKPTAASSESSKELGAASSSAEKEKTKTETQPQKPKKTWE
LNNFDIGRLLGRGKFGNVYLAREKESQFVVALKVLFKRQIGESNVEHQVR
REIEIQSHLRHPHILRLYAYFHDDVRIYLILEYAPQGTLFNALQAQPMKR
FDERQSATYIQALCSALLYLHERDIIHRDIKPENLLLGHKGVLKIADFGW
SVHEPNSMRMTLCGTVDYLPPEMVQGKPHTKNVDLWSLGVLCFELLVGHA
PFYSKNYDETYKKILKVDYKLPEHISKAASHLISKLLVLNPQHRLPLDQV
MVHPWILAHTQASFLDH

BO04614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
aurA-PA 411 CG3068-PA 1..411 1..411 2149 100 Plus
aurB-PA 329 CG6620-PA 48..307 149..408 718 51.9 Plus
SAK-PA 769 CG7186-PA 11..268 151..407 480 38.3 Plus
CG12069-PC 356 CG12069-PC 38..286 145..394 440 37.7 Plus
CG12069-PA 356 CG12069-PA 38..286 145..394 440 37.7 Plus