Clone Sequence Records
BO04614.3prime Sequence
935 bp (843 high quality bases) assembled on 2005-12-01
> BO04614.3prime
ATGGTCTAGAAAGCTTGCCTGCGTGTGCGCCAGGATCCAAGGATGCACCA
TCACCTGATCCAGCGGTAGGCGGTGCTGCGGATTAAGGACCAGCAGCTTG
GAAATGAGATGGGATGCTGCCTTGGAAATGTGCTCCGGCAGTTTGTAGTC
CACCTTGAGAATCTTCTTGTAGGTCTCGTCATAGTTCTTCGAGTAGAAGG
GAGCGTGGCCCACTAGCAGCTCAAAGCAGAGCACACCCAGGCTCCATAGA
TCCACGTTTTTCGTGTGCGGCTTGCCCTGAACCATTTCGGGTGGCAAGTA
GTCGACAGTGCCGCACAGTGTCATGCGCATGGAGTTCGGCTCGTGCACGG
ACCAACCGAAGTCGGCGATCTTCAGGACGCCCTTGTGCCCGAGCAGCAAG
TTCTCCGGCTTGATGTCCCTGTGTATGATGTCCCGCTCATGCAGATAGAG
CAGCGCCGAGCACAACGCCTGAATATAGGTGGCCGACTGGCGTTCATCGA
AACGTTTCATCGGCTGTGCCTGCAAGGCGTTGAAAAGCGTTCCTTGTGGC
GCATACTCCAAGATCAGATATATGCGCACGTCGTCGTGAAAGTAGGCATA
CAGACGCAGGATATGCGGATGACGTAGGTGCGATTGTATCTCGATCTCAC
GACGCACCTGGTGCTCCACATTGGACTCGCCAATCTGGCGCTTAAAGAGC
ACTTTTAGGGCCACCACGAACTGGGATTCCTTTTCCCGCGCCAAATAAAC
GTTGCCAAACTTGCCCCGTCCCAGCAGGCGACCAATATCAAAGTTGTTGA
GCTCCCAGGTCTTCTTCGGCTTCTGGGGCTGGGTTTCAGTCTTGGTTTTC
TCTTTTTCAGCGGAGCTGCTGGCCGCACCCAGTTCCTTGGAGGATTCAGA
GCTCGCAGCAGTGGGTTTCTGCTTGGAAAGTGACT
BO04614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3068-PA | 1236 | aur-RA | 317..1233 | 935..19 | 4585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1577 | CG3068-RA | 485..1401 | 935..19 | 4585 | 100 | Minus |
aurB-RA | 1183 | CG6620-RA | 655..785 | 411..281 | 180 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11963832..11964650 | 837..19 | 4095 | 100 | Minus |
3R | 32079331 | 3R | 11963672..11963770 | 935..837 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:38:12 has no hits.
BO04614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:05 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-PA | 317..1236 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:56 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3068-PA | 317..1236 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:24 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 485..1405 | 15..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:17 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurA-RA | 485..1405 | 15..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:17 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11963672..11963770 | 837..935 | 100 | -> | Minus |
3R | 11963833..11964654 | 15..836 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:24 Download gff for
BO04614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7789394..7789492 | 837..935 | 100 | -> | Minus |
arm_3R | 7789555..7790376 | 15..836 | 99 | | Minus |
BO04614.5prime Sequence
875 bp (757 high quality bases) assembled on 2005-11-29
> BO04614.5prime
GAAGTTATCAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCA
AGGAAAATGCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAAT
ATGCAAAAGAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGC
TCCAGCTAGCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGC
CAGGCCTAGGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTC
CAAAAACCCATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGC
TCCGGCTCCAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGA
AACCCACTGCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGC
AGCTCCGCTGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCC
GAAGAAGACCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGAC
GGGGCAAGTTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTC
GTGGTGGCCCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGT
GGAGCACCAGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATC
CGCATATCCTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATAT
CTGATCTTGGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGC
ACAGCCGATGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAGG
CGTTGTGCTCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGG
GACATCAAGCCGGAGAACTTGCTGC
BO04614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3068-PA | 1236 | aur-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1577 | CG3068-RA | 168..1027 | 16..875 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11963832..11964276 | 431..875 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 11963468..11963770 | 129..431 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 11963291..11963405 | 16..130 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:29:51 has no hits.
BO04614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:06 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:58 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3068-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:08 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 165..1027 | 13..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:58 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurA-RA | 165..1027 | 13..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:58 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11963288..11963405 | 13..130 | 99 | -> | Plus |
3R | 11963470..11963770 | 131..431 | 100 | -> | Plus |
3R | 11963833..11964276 | 432..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:08 Download gff for
BO04614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7789010..7789127 | 13..130 | 99 | -> | Plus |
arm_3R | 7789192..7789492 | 131..431 | 100 | -> | Plus |
arm_3R | 7789555..7789998 | 432..875 | 100 | | Plus |
BO04614.complete Sequence
1267 bp (1267 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629812
> BO04614.complete
GAAGTTATCAGTCGACATGTCCCATCCGTCTGACCATGTGCTGCGTCCCA
AGGAAAATGCTCCGCACAGAATGCCAGAAAAATCAGCTGCAGTGCACAAT
ATGCAAAAGAACTTGCTATTGGGAAAGAAGCCCAACAGCGAGAATATGGC
TCCAGCTAGCAAACCCTTGCCAGGATCCTCTGGCGCTTTGATCAGGAAGC
CAGGCCTAGGAGGCTCCAATTCCATAGCTTCCTCCGAAGGAAACAACTTC
CAAAAACCCATGGTGCCGTCCGTGAAGAAGACCACATCAGAGTTTGCTGC
TCCGGCTCCAGTAGCACCTATCAAGAAGCCTGAGTCACTTTCCAAGCAGA
AACCCACTGCTGCGAGCTCTGAATCCTCCAAGGAACTGGGTGCGGCCAGC
AGCTCCGCTGAAAAAGAGAAAACCAAGACTGAAACCCAGCCCCAGAAGCC
GAAGAAGACCTGGGAGCTCAACAACTTTGATATTGGTCGCCTGCTGGGAC
GGGGCAAGTTTGGCAACGTTTATTTGGCGCGGGAAAAGGAATCCCAGTTC
GTGGTGGCCCTAAAAGTGCTCTTTAAGCGCCAGATTGGCGAGTCCAATGT
GGAGCACCAGGTGCGTCGTGAGATCGAGATACAATCGCACCTACGTCATC
CGCATATCCTGCGTCTGTATGCCTACTTTCACGACGACGTGCGCATATAT
CTGATCTTGGAGTATGCGCCACAAGGAACGCTTTTCAACGCCTTGCAGGC
ACAGCCGATGAAACGTTTCGATGAACGCCAGTCGGCCACCTATATTCAGG
CGTTGTGCTCGGCGCTGCTCTATCTGCATGAGCGGGACATCATACACAGG
GACATCAAGCCGGAGAACTTGCTGCTCGGGCACAAGGGCGTCCTGAAGAT
CGCCGACTTCGGTTGGTCCGTGCACGAGCCGAACTCCATGCGCATGACAC
TGTGCGGCACTGTCGACTACTTGCCACCCGAAATGGTTCAGGGCAAGCCG
CACACGAAAAACGTGGATCTATGGAGCCTGGGTGTGCTCTGCTTTGAGCT
GCTAGTGGGCCACGCTCCCTTCTACTCGAAGAACTATGACGAGACCTACA
AGAAGATTCTCAAGGTGGACTACAAACTGCCGGAGCACATTTCCAAGGCA
GCATCCCATCTCATTTCCAAGCTGCTGGTCCTTAATCCGCAGCACCGCCT
ACCGCTGGATCAGGTGATGGTGCATCCTTGGATCCTGGCGCACACGCAGG
CAAGCTTTCTAGACCAT
BO04614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1236 | CG3068-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-RA | 1577 | CG3068-RA | 168..1401 | 16..1249 | 6170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11963832..11964650 | 431..1249 | 4095 | 100 | Plus |
3R | 32079331 | 3R | 11963468..11963770 | 129..431 | 1515 | 100 | Plus |
3R | 32079331 | 3R | 11963291..11963405 | 16..130 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:25:48 has no hits.
BO04614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:48 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 1..1236 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:44 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 159..1399 | 13..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:17 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 169..1401 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:48 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aur-RA | 159..1399 | 13..1253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:17 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurA-RA | 169..1401 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:17 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11963470..11963770 | 131..431 | 100 | -> | Plus |
3R | 11963292..11963405 | 17..130 | 100 | -> | Plus |
3R | 11963833..11964650 | 432..1251 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:17 Download gff for
BO04614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7789014..7789127 | 17..130 | 100 | -> | Plus |
arm_3R | 7789192..7789492 | 131..431 | 100 | -> | Plus |
arm_3R | 7789555..7790372 | 432..1251 | 99 | | Plus |
BO04614.pep Sequence
Translation from 16 to 1267
> BO04614.pep
MSHPSDHVLRPKENAPHRMPEKSAAVHNMQKNLLLGKKPNSENMAPASKP
LPGSSGALIRKPGLGGSNSIASSEGNNFQKPMVPSVKKTTSEFAAPAPVA
PIKKPESLSKQKPTAASSESSKELGAASSSAEKEKTKTETQPQKPKKTWE
LNNFDIGRLLGRGKFGNVYLAREKESQFVVALKVLFKRQIGESNVEHQVR
REIEIQSHLRHPHILRLYAYFHDDVRIYLILEYAPQGTLFNALQAQPMKR
FDERQSATYIQALCSALLYLHERDIIHRDIKPENLLLGHKGVLKIADFGW
SVHEPNSMRMTLCGTVDYLPPEMVQGKPHTKNVDLWSLGVLCFELLVGHA
PFYSKNYDETYKKILKVDYKLPEHISKAASHLISKLLVLNPQHRLPLDQV
MVHPWILAHTQASFLDH
BO04614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurA-PA | 411 | CG3068-PA | 1..411 | 1..411 | 2149 | 100 | Plus |
aurB-PA | 329 | CG6620-PA | 48..307 | 149..408 | 718 | 51.9 | Plus |
SAK-PA | 769 | CG7186-PA | 11..268 | 151..407 | 480 | 38.3 | Plus |
CG12069-PC | 356 | CG12069-PC | 38..286 | 145..394 | 440 | 37.7 | Plus |
CG12069-PA | 356 | CG12069-PA | 38..286 | 145..394 | 440 | 37.7 | Plus |