Clone BO04616 Report

Search the DGRC for BO04616

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptRpn9-RA
Protein status:BO04616.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO04616.3prime Sequence

948 bp (807 high quality bases) assembled on 2005-12-01

> BO04616.3prime
ATGGTCTAGAAAGCTTGCATTGGTGAGGATTTCGGCGGCACGATTCTCCA
TCAGTTTCTCCATGTTCGTGATGGCGCCCATCCATGTGTCCAGAGTGCTG
GCCATGCCGACAATCTGGCTGCGGTTGAGGACGCGTGGTTGCACCCACGA
CATGTTAACCACTCCAGCCACTTGGTCAATCTCGCCGCGGACGAGATCCA
AAGCCAGAGCCTTCATGATAAGCAGTTCCACTTCCTTGGCGGGCAGTTTG
GTCTCTTGCGCGATGTCGGTAAAGGAGATGGCTCGCTCGATGGCTGAGCG
CTTGAAGGTCATCTCCATGAGGCAAAGGAGGGAGATCTTCTGGCGCAACT
TGACCTCCTGGGCAGCCAAATCGGGAATCTTGGACCAGATTTTCTTCATG
TCATTAAACTTGTTAATATCGCCCGTGTTGAAGGCTTTAAGAAGTTCCAT
GAGCCACTCATTTTCCGTGCCCTTAAGCGACTCAAGAATGGGATGAGCCA
GCAATTCGCCTATGTTGTAGACACCATCGCCCAAGAGAGCAGCCAGACCC
AAGAAGAATGCCTGCTGGGCCCATTGATCACGGGGGTACTCATCCATGGA
GCAGCCCAGAAACTGTAGGCCACATCGGTAGTAATCGCTGTGCTTGCCCA
CTCGCCGATAATACTGGGATGCCAGCATGTAGTATTTGCCGTGAACGGGC
GTCACATTACCCGCTTCCTCTAGGACATCACGCAGTTCCTCGATGATCTT
CTTGGTGGCATTCAGATCGTTCAGGTTGCTGAGGTACAGATTACCCTGCA
TCACCTGCAGATACCCAACGGCCTCGTCGCAGATCTTCACCTTGTCCTTC
ATCTTCTCCAAGAACTCGATGGCCTCCTTTCTTGTCACGATGTTTGTCAC
CACCACCTCGAGAATCTGGATGAGGCCATAGGGGGTTATTTTTGTCTC

BO04616.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10230-PB 1149 Rpn9-RB 286..1146 879..19 4280 99.8 Minus
CG10230-PA 1149 Rpn9-RA 286..1146 879..19 4280 99.8 Minus
CG10230-PB 1149 Rpn9-RB 217..266 948..899 200 96 Minus
CG10230-PA 1149 Rpn9-RA 217..266 948..899 200 96 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 323..1252 948..19 4515 99.2 Minus
Rpn9-RB 1578 CG10230-RB 433..1362 948..19 4515 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 408..940 2480 98.5 Plus
3R 32079331 3R 23731591..23731981 19..409 1955 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:21:08 has no hits.

BO04616.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:09 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-PA 217..1149 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:01 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10230-PA 217..1149 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:45 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 433..1368 10..948 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:43 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 433..1368 10..948 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:43 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23731584..23731981 10..409 99 <- Plus
3R 23732043..23732573 410..940 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:45 Download gff for BO04616.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557306..19557703 10..409 99 <- Plus
arm_3R 19557765..19558295 410..940 98   Plus

BO04616.5prime Sequence

922 bp (785 high quality bases) assembled on 2005-11-29

> BO04616.5prime
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCG

BO04616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10230-PB 1149 Rpn9-RB 1..906 17..922 4530 100 Plus
CG10230-PA 1149 Rpn9-RA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 107..1012 17..922 4530 100 Plus
Rpn9-RB 1578 CG10230-RB 217..1122 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 773..241 2665 100 Minus
3R 32079331 3R 23731831..23731981 922..772 755 100 Minus
3R 32079331 3R 23732627..23732740 240..127 570 100 Minus
3R 32079331 3R 23732796..23732905 126..17 550 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:19:24 has no hits.

BO04616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:10 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:03 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10230-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:21 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 215..1122 13..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:55:54 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 215..1122 13..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:55:54 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23731831..23731981 772..922 100 <- Minus
3R 23732043..23732573 241..771 100 <- Minus
3R 23732627..23732740 127..240 100 <- Minus
3R 23732796..23732913 9..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:21 Download gff for BO04616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557553..19557703 772..922 100 <- Minus
arm_3R 19557765..19558295 241..771 100 <- Minus
arm_3R 19558349..19558462 127..240 100 <- Minus
arm_3R 19558518..19558635 9..126 97   Minus

BO04616.complete Sequence

1180 bp (1180 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629813

> BO04616.complete
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCGCAAGAGACCAAACTGCCCGCCAAGGAAG
TGGAACTGCTTATCATGAAGGCTCTGGCTTTGGATCTCGTCCGCGGCGAG
ATTGACCAAGTGGCTGGAGTGGTTAACATGTCGTGGGTGCAACCACGCGT
CCTCAACCGCAGCCAGATTGTCGGCATGGCCAGCACTCTGGACACATGGA
TGGGCGCCATCACGAACATGGAGAAACTGATGGAGAATCGTGCCGCCGAA
ATCCTCACCAATGCAAGCTTTCTAGACCAT

BO04616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1149 CG10230-PA 1..1146 17..1162 5730 100 Plus
Rpn9-RB 1149 CG10230-PB 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-RA 1340 CG10230-RA 107..1252 17..1162 5730 100 Plus
Rpn9-RB 1578 CG10230-RB 217..1362 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23732041..23732573 773..241 2665 100 Minus
3R 32079331 3R 23731591..23731981 1162..772 1955 100 Minus
3R 32079331 3R 23732627..23732740 240..127 570 100 Minus
3R 32079331 3R 23732796..23732905 126..17 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:14:58 has no hits.

BO04616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:56 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 1..1149 17..1163 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:55 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 84..1243 9..1171 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:47 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 217..1362 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:56 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RA 84..1243 9..1171 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:34 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
Rpn9-RB 217..1362 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:34 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23732796..23732905 17..126 100   Minus
3R 23731589..23731981 772..1164 99 <- Minus
3R 23732043..23732573 241..771 100 <- Minus
3R 23732627..23732740 127..240 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:47 Download gff for BO04616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19557311..19557703 772..1164 99 <- Minus
arm_3R 19557765..19558295 241..771 100 <- Minus
arm_3R 19558349..19558462 127..240 100 <- Minus
arm_3R 19558518..19558627 17..126 100   Minus

BO04616.pep Sequence

Translation from 16 to 1180

> BO04616.pep
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTNASFLDH

BO04616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rpn9-PA 382 CG10230-PA 1..382 1..382 1960 100 Plus
Rpn9-PB 382 CG10230-PB 1..382 1..382 1960 100 Plus