Clone Sequence Records
BO04616.3prime Sequence
948 bp (807 high quality bases) assembled on 2005-12-01
> BO04616.3prime
ATGGTCTAGAAAGCTTGCATTGGTGAGGATTTCGGCGGCACGATTCTCCA
TCAGTTTCTCCATGTTCGTGATGGCGCCCATCCATGTGTCCAGAGTGCTG
GCCATGCCGACAATCTGGCTGCGGTTGAGGACGCGTGGTTGCACCCACGA
CATGTTAACCACTCCAGCCACTTGGTCAATCTCGCCGCGGACGAGATCCA
AAGCCAGAGCCTTCATGATAAGCAGTTCCACTTCCTTGGCGGGCAGTTTG
GTCTCTTGCGCGATGTCGGTAAAGGAGATGGCTCGCTCGATGGCTGAGCG
CTTGAAGGTCATCTCCATGAGGCAAAGGAGGGAGATCTTCTGGCGCAACT
TGACCTCCTGGGCAGCCAAATCGGGAATCTTGGACCAGATTTTCTTCATG
TCATTAAACTTGTTAATATCGCCCGTGTTGAAGGCTTTAAGAAGTTCCAT
GAGCCACTCATTTTCCGTGCCCTTAAGCGACTCAAGAATGGGATGAGCCA
GCAATTCGCCTATGTTGTAGACACCATCGCCCAAGAGAGCAGCCAGACCC
AAGAAGAATGCCTGCTGGGCCCATTGATCACGGGGGTACTCATCCATGGA
GCAGCCCAGAAACTGTAGGCCACATCGGTAGTAATCGCTGTGCTTGCCCA
CTCGCCGATAATACTGGGATGCCAGCATGTAGTATTTGCCGTGAACGGGC
GTCACATTACCCGCTTCCTCTAGGACATCACGCAGTTCCTCGATGATCTT
CTTGGTGGCATTCAGATCGTTCAGGTTGCTGAGGTACAGATTACCCTGCA
TCACCTGCAGATACCCAACGGCCTCGTCGCAGATCTTCACCTTGTCCTTC
ATCTTCTCCAAGAACTCGATGGCCTCCTTTCTTGTCACGATGTTTGTCAC
CACCACCTCGAGAATCTGGATGAGGCCATAGGGGGTTATTTTTGTCTC
BO04616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10230-PB | 1149 | Rpn9-RB | 286..1146 | 879..19 | 4280 | 99.8 | Minus |
CG10230-PA | 1149 | Rpn9-RA | 286..1146 | 879..19 | 4280 | 99.8 | Minus |
CG10230-PB | 1149 | Rpn9-RB | 217..266 | 948..899 | 200 | 96 | Minus |
CG10230-PA | 1149 | Rpn9-RA | 217..266 | 948..899 | 200 | 96 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 323..1252 | 948..19 | 4515 | 99.2 | Minus |
Rpn9-RB | 1578 | CG10230-RB | 433..1362 | 948..19 | 4515 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 408..940 | 2480 | 98.5 | Plus |
3R | 32079331 | 3R | 23731591..23731981 | 19..409 | 1955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:21:08 has no hits.
BO04616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:09 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-PA | 217..1149 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:01 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10230-PA | 217..1149 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:45 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 433..1368 | 10..948 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:42:43 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 433..1368 | 10..948 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:42:43 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731584..23731981 | 10..409 | 99 | <- | Plus |
3R | 23732043..23732573 | 410..940 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:45 Download gff for
BO04616.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557306..19557703 | 10..409 | 99 | <- | Plus |
arm_3R | 19557765..19558295 | 410..940 | 98 | | Plus |
BO04616.5prime Sequence
922 bp (785 high quality bases) assembled on 2005-11-29
> BO04616.5prime
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCG
BO04616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10230-PB | 1149 | Rpn9-RB | 1..906 | 17..922 | 4530 | 100 | Plus |
CG10230-PA | 1149 | Rpn9-RA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 107..1012 | 17..922 | 4530 | 100 | Plus |
Rpn9-RB | 1578 | CG10230-RB | 217..1122 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 773..241 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731831..23731981 | 922..772 | 755 | 100 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 240..127 | 570 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732905 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:19:24 has no hits.
BO04616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:10 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:03 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10230-PA | 1..906 | 17..922 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:21 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 215..1122 | 13..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:55:54 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 215..1122 | 13..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:55:54 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23731831..23731981 | 772..922 | 100 | <- | Minus |
3R | 23732043..23732573 | 241..771 | 100 | <- | Minus |
3R | 23732627..23732740 | 127..240 | 100 | <- | Minus |
3R | 23732796..23732913 | 9..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:21 Download gff for
BO04616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557553..19557703 | 772..922 | 100 | <- | Minus |
arm_3R | 19557765..19558295 | 241..771 | 100 | <- | Minus |
arm_3R | 19558349..19558462 | 127..240 | 100 | <- | Minus |
arm_3R | 19558518..19558635 | 9..126 | 97 | | Minus |
BO04616.complete Sequence
1180 bp (1180 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629813
> BO04616.complete
GAAGTTATCAGTCGACATGTCCAATCCTCAGCCTAATGTCACCGCCTATC
TGGCGACCCAGAAGAAGACCACCAACAAAGAACTCGCCGCCGAATGGACG
CTCATCGAGGAGCTCTACAATGAAAAACTCTGGAATGAGCTGACCATCAA
ACTGGTGACCTTTGTGCGCCACGAATCCTTGCAGGACGAAACTGCGCTGC
TGCAGCTCTACCAGAATTTCCTGTCCACCTTCGAGACCAAAATAAACCCC
TATGGCCTCATCCAGATTCTCGAGGTGGTGGTTGACAACATCGGTGACAA
GAAGGAGGCCATCGAGTTCTTGGAGAAGATGAAGGACAAGGTGAAGATCT
GCGACGAGGCCGTTTGGTATCTGCAGGTGATGCAGGGTAATCTGTACCTC
AGCAACCTGAACGATCTGAATGCCACCAAGAAGATCATCGAGGAACTGCG
TGATGTCCTAGAGGAAGCGGGTAATGTGACGCCCGTTCACGGCAAATACT
ACATGCTGGCATCCCAGTATTATCGGCGAGTGGGCAAGCACAGCGATTAC
TACCGATGTGGCCTACAGTTTCTGGGCTGCTCCATGGATGAGTACCCCCG
TGATCAATGGGCCCAGCAGGCATTCTTCTTGGGTCTGGCTGCTCTCTTGG
GCGATGGTGTCTACAACATAGGCGAATTGCTGGCTCATCCCATTCTTGAG
TCGCTTAAGGGCACGGAAAATGAGTGGCTCATGGAACTTCTTAAAGCCTT
CAACACGGGCGATATTAACAAGTTTAATGACATGAAGAAAATCTGGTCCA
AGATTCCCGATTTGGCTGCCCAGGAGGTCAAGTTGCGCCAGAAGATCTCC
CTCCTTTGCCTCATGGAGATGACCTTCAAGCGCTCAGCCATCGAGCGAGC
CATCTCCTTTACCGACATCGCGCAAGAGACCAAACTGCCCGCCAAGGAAG
TGGAACTGCTTATCATGAAGGCTCTGGCTTTGGATCTCGTCCGCGGCGAG
ATTGACCAAGTGGCTGGAGTGGTTAACATGTCGTGGGTGCAACCACGCGT
CCTCAACCGCAGCCAGATTGTCGGCATGGCCAGCACTCTGGACACATGGA
TGGGCGCCATCACGAACATGGAGAAACTGATGGAGAATCGTGCCGCCGAA
ATCCTCACCAATGCAAGCTTTCTAGACCAT
BO04616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1149 | CG10230-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Rpn9-RB | 1149 | CG10230-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-RA | 1340 | CG10230-RA | 107..1252 | 17..1162 | 5730 | 100 | Plus |
Rpn9-RB | 1578 | CG10230-RB | 217..1362 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23732041..23732573 | 773..241 | 2665 | 100 | Minus |
3R | 32079331 | 3R | 23731591..23731981 | 1162..772 | 1955 | 100 | Minus |
3R | 32079331 | 3R | 23732627..23732740 | 240..127 | 570 | 100 | Minus |
3R | 32079331 | 3R | 23732796..23732905 | 126..17 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:14:58 has no hits.
BO04616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:56 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 1..1149 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:55 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 84..1243 | 9..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:47 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 217..1362 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:56 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RA | 84..1243 | 9..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:34 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn9-RB | 217..1362 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:34 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23732796..23732905 | 17..126 | 100 | | Minus |
3R | 23731589..23731981 | 772..1164 | 99 | <- | Minus |
3R | 23732043..23732573 | 241..771 | 100 | <- | Minus |
3R | 23732627..23732740 | 127..240 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:47 Download gff for
BO04616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19557311..19557703 | 772..1164 | 99 | <- | Minus |
arm_3R | 19557765..19558295 | 241..771 | 100 | <- | Minus |
arm_3R | 19558349..19558462 | 127..240 | 100 | <- | Minus |
arm_3R | 19558518..19558627 | 17..126 | 100 | | Minus |
BO04616.pep Sequence
Translation from 16 to 1180
> BO04616.pep
MSNPQPNVTAYLATQKKTTNKELAAEWTLIEELYNEKLWNELTIKLVTFV
RHESLQDETALLQLYQNFLSTFETKINPYGLIQILEVVVDNIGDKKEAIE
FLEKMKDKVKICDEAVWYLQVMQGNLYLSNLNDLNATKKIIEELRDVLEE
AGNVTPVHGKYYMLASQYYRRVGKHSDYYRCGLQFLGCSMDEYPRDQWAQ
QAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMELLKAFNTGDI
NKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTD
IAQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQ
IVGMASTLDTWMGAITNMEKLMENRAAEILTNASFLDH
BO04616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn9-PA | 382 | CG10230-PA | 1..382 | 1..382 | 1960 | 100 | Plus |
Rpn9-PB | 382 | CG10230-PB | 1..382 | 1..382 | 1960 | 100 | Plus |