Clone Sequence Records
BO04620.3prime Sequence
967 bp (860 high quality bases) assembled on 2005-12-01
> BO04620.3prime
ATGGTCTAGAAAGCTTGCTGGAACTGTATATTCCATTTCCAATTCCTGCT
TGACTGTATTAATCACTTCATTCTCGCTAAGCGGCTCGGATTTTAGATCA
TTCTGTGGTGCCGGCTCTGGATCGATTAATTCAACATGTGTACCCATTTT
TGCATAATCGTGTTTGGGGCGTGGTAAAGAAACTAATGCTGATGGTAAGT
CCGTAAAGAGTTGTGATTCCAAGCGGCTGAGAAGAGTGGTACGATAGAAA
AGAGCTTGCAACCGCTTGCGGAAAAGCTGGATGGGTGGTAAAGATTCATT
GTATTCGAAGCTACGTGTTTCCGTATCCTTGCGACAATCTCCGGAAAGAA
TGCATAAGGCTCGAAACCCCATCATAGTTGACCAGTTGGGTGGCAAAAGT
GGGCTCTTCATATCACCTTCCTCGTCCGGAAGGTTTCGGATCATGCTGTT
GTAGCACTTAAGCACATCATTTGGCATAAATATGTTTTGTAAGAGCGAGG
GTCGAATTGGTGGCTTATATGCAAGAGCTCTGATCACGTAGGCAAGGTTA
TAAACGTCTTTTGGAACTGGAAAAGTTTTTGGAGTGCTCAGCGTCAGATT
ATAACTAAACTTAAAGAAGTTGCAGAACTCTATATCAACTTTCGAAAGTC
TTGAGAAACTCTCTGCCTGTCGCTCGATCCTAGCCTTTTTCGATTTGGGA
CCGCGCACCCGAGTTCCTTTCGGGGGGTTATCATTAACTAATGACTCTGG
GTCCTCTTGCCACTCTTGCAAACGCTGCGCCCAGTTATCAGAGTTAACCA
AGGACACCTTCTTCGATCGGCGGCGTGGCAGGTCTTCCACTTTTGCATTG
GGATTTTGTTCAAGGAATTTCTTGATGACTAGGAAGCGGGTTCGACAGCT
GGTCCGCGTGTGATTGCCCAAGAACGTGGCACATTTAAGCCACTGGGAAA
CCCCGGTATTGCGTTAC
BO04620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2702-PA | 2166 | CG2702-RA | 1227..2163 | 955..19 | 4635 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-RA | 2649 | CG2702-RA | 1263..2210 | 967..19 | 4690 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8015224..8016171 | 967..19 | 4665 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:46:11 has no hits.
BO04620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:12 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2702-PA | 1216..2166 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:07 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2702-PA | 1216..2166 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:14 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 1263..2210 | 19..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:27:58 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 1263..2210 | 19..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:27:58 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8015224..8016171 | 19..967 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:14 Download gff for
BO04620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3840946..3841893 | 19..967 | 99 | | Minus |
BO04620.5prime Sequence
885 bp (823 high quality bases) assembled on 2005-12-01
> BO04620.5prime
GAAGTTATCAGTCGACATGGACGATGCCGATGATCTGCGCATAAACCAGC
AGCAGCTTATGGACGAGATTTCGGCCCTCTTGCAGAACACAGCGAAGCCG
AGCGCCGCCAACGCACTGCAGCTGAATCAGGAGCTCCAGCGCCGGCTCAT
GCAAGTCCGGACCAAAATTCTGGCCATGTTACAAGTAGTAAGGGCCCGCT
TCTCTCGGAACGAGGACATCCTGGTGCGCCGGCTGCGACCTCGTTCCCAT
TTCGGCCCGAATTCCCTCAATCTTAGCGGGGCGATCCTGCGGAAGGGCAC
GTTTCGCTTCAAGGGCAACCTGTTTTTCCGAGACATCGATGGTCGAAGCT
GTCCTAACAACGAGGATTACGAGGCGCGGTGCCACACGGAGATGTTTCCC
ACCGACTTTGACATGCACTCCAGACATGTATGGACATTGCTAGACAAAAA
GAATGTGATAATGGGTATAAAACAACAGTTACTGGAGCATAGGGCCCACA
GTACGAATGCGCTGCCCAGCGGAAGCCTGAAGCGCAAGCCAATCGAGCGA
CACTTAAGTACACTGGTAAGTCTGCTGGCAACTGCGGATAGTAGCTTCAG
CATCGACTGGAACCAGATCAGCACCCTGGACTTGGAATATCGGCACTCAC
CATATAGCTGTGAGGCAATGTGGAGGGTCTACTTAACACCAGATCTCAGG
CGAGACGATTGGTCACCCGAGGAGGACGAAACTTTACTGGCGGTGGCCAC
TGCGAACAGGATGCAGAACTGGGAGTTGATAGCCGCGTCGCTAGACCGAC
GTTCCGACTATCAGTGCTTCGTACGCTTTCATACCGCCCTACGTTTTCTG
CTGGAGCCAAAGAACAGCCACCGCTGGAGCGAAGA
BO04620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2702-PA | 2166 | CG2702-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-RA | 2649 | CG2702-RA | 48..916 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8013838..8014299 | 17..478 | 2310 | 100 | Plus |
| 3R | 32079331 | 3R | 8014408..8014817 | 476..885 | 2050 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:10:18 has no hits.
BO04620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:13 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2702-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:08 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2702-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:38:55 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 44..915 | 10..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:28 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 44..915 | 10..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:28 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8013834..8014299 | 10..478 | 99 | -> | Plus |
| 3R | 8014411..8014816 | 479..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:38:55 Download gff for
BO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3839556..3840021 | 10..478 | 99 | -> | Plus |
| arm_3R | 3840133..3840538 | 479..884 | 100 | | Plus |
BO04620.complete Sequence
2197 bp assembled on 2008-08-14
GenBank Submission: FJ629814
> BO04620.complete
GAAGTTATCAGTCGACATGGACGATGCCGATGATCTGCGCATAAACCAGC
AGCAGCTTATGGACGAGATTTCGGCCCTCTTGCAGAACACAGCGAAGCCG
AGCGCCGCCAACGCACTGCAGCTGAATCAGGAGCTCCAGCGCCGGCTCAT
GCAAGTCCGGACCAAAATTCTGGCCATGTTACAAGTAGTAAGGGCCCGCT
TCTCTCGGAACGAGGACATCCTGGTGCGCCGGCTGCGACCTCGTTCCCAT
TTCGGCCCGAATTCCCTCAATCTTAGCGGGGCGATCCTGCGGAAGGGCAC
GTTTCGCTTCAAGGGCAACCTGTTTTTCCGAGACATCGATGGTCGAAGCT
GTCCTAACAACGAGGATTACGAGGCGCGGTGCCACACGGAGATGTTTCCC
ACCGACTTTGACATGCACTCCAGACATGTATGGACATTGCTAGACAAAAA
GAATGTGATAATGGGTATAAAACAACAGTTACTGGAGCATAGGGCCCACA
GTACGAATGCGCTGCCCAGCGGAAGCCTGAAGCGCAAGCCAATCGAGCGA
CACTTAAGTACACTGGTAAGTCTGCTGGCAACTGCGGATAGTAGCTTCAG
CATCGACTGGAACCAGATCAGCACCCTGGACTTGGAATATCGGCACTCAC
CATATAGCTGTGAGGCAATGTGGAGGGTCTACTTAACACCAGATCTCAGG
CGAGACGATTGGTCACCCGAGGAGGACGAAACTTTACTGGCGGTGGCCAC
TGCGAACAGGATGCAGAACTGGGAGTTGATAGCCGCGTCGCTAGACCGAC
GTTCCGACTATCAGTGCTTCGTACGCTTTCATACCGCCCTACGTTTTCTG
CTGGAGCCAAAGAACAGCCACCGCTGGAGCGAAGAGGACAACGATAAACT
AAGGGCGATCGTTGATAGGAATACGGCAAACAGTGTAATAAACTGGAAAA
AAGTCGTGGAATACTTCCCGGACAAGTCCAAATCAACGCTGATTGGTCGT
TACTACTACGTGTTGCATCCTAGCATCAGTCACGAACCCTTCACTACCAA
GGAGGACATGATGCTGTTCGCCGCCGTTGAAGAGTACAATGGAAAGTTTC
ACTGTTTTCCGCGTTCTCTTTTCCCAAACCGGTCGTTAACCCAACTCCGA
ACTCGCTACCACAATGTACTGGCACAACGCAACAAGACCGACTCCTGGTC
CGTTCAGGACGACACACGGCTGATGAGCTTCGTAACGCAATACGGGGCTT
CCCAGTGGCTTAACTGTGCCACGTTCTTGGGCAATCACACGCGGACCAGC
TGTCGAACCCGCTTCCTAGTCATCAAGAAATTCCTTGAACAAAATCCCAA
TGCAAAAGTGGAAGACCTGCCACGCCGCCGATCGAAGAAGGTGTCCTTGG
TTAACTCTGATAACTGGGCGCAGCGTTTGCAAGAGTGGCAAGAGGACCCA
GAGTCATTAGTTAATGATAACCCCCCGAAAGGAACTCGGGTGCGCGGTCC
CAAATCGAAAAAGGCTAGGATCGAGCGACAGGCAGAGAGTTTCTCAAGAC
TTTCGAAAGTTGATATAGAGTTCTGCAACTTCTTTAAGTTTAGTTATAAT
CTGACGCTGAGCACTCCAAAAACTTTTCCAGTTCCAAAAGACGTTTATAA
CCTTGCCTACGTGATCAGAGCTCTTGCATATAAGCCACCAATTCGACCCT
CGCTCTTACAAAACATATTTATGCCAAATGATGTGCTTAAGTGCTACAAC
AGCATGATCCGAAACCTTCCGGACGAGGAAGGTGATATGAAGAGCCCACT
TTTGCCACCCAACTGGTCAACTATGATGGGGTTTCGAGCCTTATGCATTC
TTTCCGGAGATTGTCGCAAGGATACGGAAACACGTAGCTTCGAATACAAT
GAATCTTTACCACCCATCCAGCTTTTCCGCAAGCGGTTGCAAGCTCTTTT
CTATCGTACCACTCTTCTCAGCCGCTTGGAATCACAACTCTTTACGGACT
TACCATCAGCATTAGTTTCTTTACCACGCCCCAAACACGATTATGCAAAA
ATGGGTACACATGTTGAATTAATCGATCCAGAGCCGGCACCACAGAATGA
TCTAAAATCCGAGCCGCTTAGCGAGAATGAAGTGATTAATACAGTCAAGC
AGGAATTGGAAATGGAATATACAGTTCCAGCAAGCTTTCTAGACCAT
BO04620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-RA | 2166 | CG2702-PA | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-RA | 2649 | CG2702-RA | 48..2210 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8015026..8016171 | 1034..2179 | 5730 | 100 | Plus |
| 3R | 32079331 | 3R | 8014408..8014966 | 476..1034 | 2795 | 100 | Plus |
| 3R | 32079331 | 3R | 8013838..8014299 | 17..478 | 2310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:02:59 has no hits.
BO04620.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:04 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 11..2177 | 10..2179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:28 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 48..2210 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:21 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 15..2177 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:31 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbp95-RA | 48..2210 | 17..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:31 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8013838..8014299 | 17..478 | 100 | -> | Plus |
| 3R | 8014411..8014966 | 479..1034 | 100 | -> | Plus |
| 3R | 8015027..8016171 | 1035..2181 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:28 Download gff for
BO04620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3839560..3840021 | 17..478 | 100 | -> | Plus |
| arm_3R | 3840133..3840688 | 479..1034 | 100 | -> | Plus |
| arm_3R | 3840749..3841893 | 1035..2181 | 99 | | Plus |
BO04620.pep Sequence
Translation from 16 to 2197
> BO04620.pep
MDDADDLRINQQQLMDEISALLQNTAKPSAANALQLNQELQRRLMQVRTK
ILAMLQVVRARFSRNEDILVRRLRPRSHFGPNSLNLSGAILRKGTFRFKG
NLFFRDIDGRSCPNNEDYEARCHTEMFPTDFDMHSRHVWTLLDKKNVIMG
IKQQLLEHRAHSTNALPSGSLKRKPIERHLSTLVSLLATADSSFSIDWNQ
ISTLDLEYRHSPYSCEAMWRVYLTPDLRRDDWSPEEDETLLAVATANRMQ
NWELIAASLDRRSDYQCFVRFHTALRFLLEPKNSHRWSEEDNDKLRAIVD
RNTANSVINWKKVVEYFPDKSKSTLIGRYYYVLHPSISHEPFTTKEDMML
FAAVEEYNGKFHCFPRSLFPNRSLTQLRTRYHNVLAQRNKTDSWSVQDDT
RLMSFVTQYGASQWLNCATFLGNHTRTSCRTRFLVIKKFLEQNPNAKVED
LPRRRSKKVSLVNSDNWAQRLQEWQEDPESLVNDNPPKGTRVRGPKSKKA
RIERQAESFSRLSKVDIEFCNFFKFSYNLTLSTPKTFPVPKDVYNLAYVI
RALAYKPPIRPSLLQNIFMPNDVLKCYNSMIRNLPDEEGDMKSPLLPPNW
STMMGFRALCILSGDCRKDTETRSFEYNESLPPIQLFRKRLQALFYRTTL
LSRLESQLFTDLPSALVSLPRPKHDYAKMGTHVELIDPEPAPQNDLKSEP
LSENEVINTVKQELEMEYTVPASFLDH
BO04620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pbp95-PA | 721 | CG2702-PA | 1..721 | 1..721 | 3796 | 100 | Plus |
