Clone BO04624 Report

Search the DGRC for BO04624

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG8460-RA
Protein status:BO04624.pep: validated full length
Sequenced Size:1240

Clone Sequence Records

BO04624.3prime Sequence

868 bp (835 high quality bases) assembled on 2005-12-01

> BO04624.3prime
ATGGTCTAGAAAGCTTGCGAAGAGATCGTAAAAATAGTTTAGGCCTTGGC
CAAGTTCCCAGATTGAAATGCCAGTGCCCAGTTCCTGGGCGAGCTTTATT
CGCTCGTTTATGGAATAGAGAGTGGGATAAAAGACAATGTGGCGACCGTC
ATCGTTTTTGATTTCAAAGAAATTTTCCACATCCCGCTCATCGTAAGTTA
GGTGCTTCTTCACATGCCTGACTAGATCCAAGTACTGGGAGAAGGTGATG
GGTCCACCTCCATCGGGCGTGTAATCATTCCCGTACATATTCAGTCCCAA
CAGAATTTTAGCCCTCTTAGCCGTCATATCAGCGCAACCTTCTGGAGCTA
TTGTCTCCACAGCCTTACGGACGAAATATAATGGTGCATTTGCTCCGGGA
CGCTGCACGCTGGAGAAGTCGTAAGTCATCAGAGAGAAGGCGTATATGTG
CTTGAACAGCTTGTCCATGTGCTTTTCTCCAAAAAGGTGGCCTGTTTCCT
TGCGGAATGGAGGAATGACCAAAATGAGTCGCAGCTGTTGCTTTTGTAGT
TCTTTGGCCATTTGCAAAACCAGTGTGTACAGAATTTTGTCATCTATGCG
TCCAGCTAGCTGGGACCACACCTCCAGGACGAGTCCATCGAAGCCATTAT
CCTTGCAGCACTTGATCAGCACGTCGTTGACTTTCGTCCTCTCCTGGGCG
TCGCTAAGCAAGAGCTTAATGTCCCGATCAGTGAAGTGATCGAATATAAA
ACGGGGAAACACTTTAACCGTTCGCTGATTGTGCACCTGTTTACCCTTTC
TCCGGACATCGGTTAGCCAACCCGCATCGATGTCATGGGTTCCGGCTACG
GCATAACGATCTCCCTGC

BO04624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 1209 CG8460-RA 357..1206 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 457..1306 868..19 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 558..158 2005 100 Minus
2L 23513712 2L 8197877..8198082 763..558 1030 100 Minus
2L 23513712 2L 8198609..8198751 161..19 700 99.3 Minus
2L 23513712 2L 8197715..8197821 868..762 535 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:46:17 has no hits.

BO04624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:14 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 357..1209 18..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:09 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 357..1209 18..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:17 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 457..1311 11..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:17 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 457..1311 11..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:17 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8198613..8198756 11..157 97   Minus
2L 8197715..8197821 762..868 100 -> Minus
2L 8197879..8198082 558..761 100 -> Minus
2L 8198149..8198548 158..557 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:17 Download gff for BO04624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197715..8197821 762..868 100 -> Minus
arm_2L 8197879..8198082 558..761 100 -> Minus
arm_2L 8198149..8198548 158..557 100 -> Minus
arm_2L 8198613..8198756 11..157 97   Minus

BO04624.5prime Sequence

846 bp (842 high quality bases) assembled on 2005-12-01

> BO04624.5prime
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGG

BO04624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 1209 CG8460-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 95..930 11..846 4165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8197287..8197565 11..289 1380 99.6 Plus
2L 23513712 2L 8197877..8198082 478..683 1030 100 Plus
2L 23513712 2L 8197632..8197821 290..479 950 100 Plus
2L 23513712 2L 8198148..8198311 683..846 820 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:08:37 has no hits.

BO04624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:15 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:10 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:24 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 92..930 8..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:37 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 92..930 8..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:37 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8197284..8197565 8..289 99 -> Plus
2L 8197632..8197821 290..479 100 -> Plus
2L 8197879..8198082 480..683 100 -> Plus
2L 8198149..8198311 684..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:24 Download gff for BO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197284..8197565 8..289 99 -> Plus
arm_2L 8197632..8197821 290..479 100 -> Plus
arm_2L 8197879..8198082 480..683 100 -> Plus
arm_2L 8198149..8198311 684..846 100   Plus

BO04624.complete Sequence

1240 bp (1240 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629815

> BO04624.complete
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGAGCA
AATGCACCATTATATTTCGTCCGTAAGGCTGTGGAGACAATAGCTCCAGA
AGGTTGCGCTGATATGACGGCTAAGAGGGCTAAAATTCTGTTGGGACTGA
ATATGTACGGGAATGATTACACGCCCGATGGAGGTGGACCCATCACCTTC
TCCCAGTACTTGGATCTAGTCAGGCATGTGAAGAAGCACCTAACTTACGA
TGAGCGGGATGTGGAAAATTTCTTTGAAATCAAAAACGATGACGGTCGCC
ACATTGTCTTTTATCCCACTCTCTATTCCATAAACGAGCGAATAAAGCTC
GCCCAGGAACTGGGCACTGGCATTTCAATCTGGGAACTTGGCCAAGGCCT
AAACTATTTTTACGATCTCTTCGCAAGCTTTCTAGACCAT

BO04624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1209 CG8460-PA 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 95..1306 11..1222 6045 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 683..1083 2005 100 Plus
2L 23513712 2L 8197287..8197565 11..289 1380 99.6 Plus
2L 23513712 2L 8197877..8198082 478..683 1030 100 Plus
2L 23513712 2L 8197632..8197821 290..479 950 100 Plus
2L 23513712 2L 8198609..8198751 1080..1222 700 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:56:30 has no hits.

BO04624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:25 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 17..1223 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:13 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 89..1308 8..1230 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:17 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 101..1306 17..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:25 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 89..1308 8..1230 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:24 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 101..1306 17..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:24 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8198149..8198548 684..1083 100 -> Plus
2L 8198613..8198751 1084..1224 98   Plus
2L 8197293..8197565 17..289 100 -> Plus
2L 8197632..8197821 290..479 100 -> Plus
2L 8197879..8198082 480..683 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:17 Download gff for BO04624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197293..8197565 17..289 100 -> Plus
arm_2L 8197632..8197821 290..479 100 -> Plus
arm_2L 8197879..8198082 480..683 100 -> Plus
arm_2L 8198149..8198548 684..1083 100 -> Plus
arm_2L 8198613..8198751 1084..1224 98   Plus

BO04624.pep Sequence

Translation from 16 to 1240

> BO04624.pep
MRAPDALLLRVALLLLLLTTVRGTLAPDSHKSKSKTKESALRGGPQDQDV
FDLGLVSPEPLAKDIVSNHRGYFKETGLRRFNGTTLGYVTPWNSHGYDVA
KIFAKKFDIISPVWLQIVKQGDRYAVAGTHDIDAGWLTDVRRKGKQVHNQ
RTVKVFPRFIFDHFTDRDIKLLLSDAQERTKVNDVLIKCCKDNGFDGLVL
EVWSQLAGRIDDKILYTLVLQMAKELQKQQLRLILVIPPFRKETGHLFGE
KHMDKLFKHIYAFSLMTYDFSSVQRPGANAPLYFVRKAVETIAPEGCADM
TAKRAKILLGLNMYGNDYTPDGGGPITFSQYLDLVRHVKKHLTYDERDVE
NFFEIKNDDGRHIVFYPTLYSINERIKLAQELGTGISIWELGQGLNYFYD
LFASFLDH

BO04624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 402 CG8460-PA 1..402 1..402 2112 100 Plus