Clone Sequence Records
BO04624.3prime Sequence
868 bp (835 high quality bases) assembled on 2005-12-01
> BO04624.3prime
ATGGTCTAGAAAGCTTGCGAAGAGATCGTAAAAATAGTTTAGGCCTTGGC
CAAGTTCCCAGATTGAAATGCCAGTGCCCAGTTCCTGGGCGAGCTTTATT
CGCTCGTTTATGGAATAGAGAGTGGGATAAAAGACAATGTGGCGACCGTC
ATCGTTTTTGATTTCAAAGAAATTTTCCACATCCCGCTCATCGTAAGTTA
GGTGCTTCTTCACATGCCTGACTAGATCCAAGTACTGGGAGAAGGTGATG
GGTCCACCTCCATCGGGCGTGTAATCATTCCCGTACATATTCAGTCCCAA
CAGAATTTTAGCCCTCTTAGCCGTCATATCAGCGCAACCTTCTGGAGCTA
TTGTCTCCACAGCCTTACGGACGAAATATAATGGTGCATTTGCTCCGGGA
CGCTGCACGCTGGAGAAGTCGTAAGTCATCAGAGAGAAGGCGTATATGTG
CTTGAACAGCTTGTCCATGTGCTTTTCTCCAAAAAGGTGGCCTGTTTCCT
TGCGGAATGGAGGAATGACCAAAATGAGTCGCAGCTGTTGCTTTTGTAGT
TCTTTGGCCATTTGCAAAACCAGTGTGTACAGAATTTTGTCATCTATGCG
TCCAGCTAGCTGGGACCACACCTCCAGGACGAGTCCATCGAAGCCATTAT
CCTTGCAGCACTTGATCAGCACGTCGTTGACTTTCGTCCTCTCCTGGGCG
TCGCTAAGCAAGAGCTTAATGTCCCGATCAGTGAAGTGATCGAATATAAA
ACGGGGAAACACTTTAACCGTTCGCTGATTGTGCACCTGTTTACCCTTTC
TCCGGACATCGGTTAGCCAACCCGCATCGATGTCATGGGTTCCGGCTACG
GCATAACGATCTCCCTGC
BO04624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-PA | 1209 | CG8460-RA | 357..1206 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-RA | 1368 | CG8460-RA | 457..1306 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8198148..8198548 | 558..158 | 2005 | 100 | Minus |
2L | 23513712 | 2L | 8197877..8198082 | 763..558 | 1030 | 100 | Minus |
2L | 23513712 | 2L | 8198609..8198751 | 161..19 | 700 | 99.3 | Minus |
2L | 23513712 | 2L | 8197715..8197821 | 868..762 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:46:17 has no hits.
BO04624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:14 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-PA | 357..1209 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:09 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-PA | 357..1209 | 18..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:17 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 457..1311 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:17 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 457..1311 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:17 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8198613..8198756 | 11..157 | 97 | | Minus |
2L | 8197715..8197821 | 762..868 | 100 | -> | Minus |
2L | 8197879..8198082 | 558..761 | 100 | -> | Minus |
2L | 8198149..8198548 | 158..557 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:17 Download gff for
BO04624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8197715..8197821 | 762..868 | 100 | -> | Minus |
arm_2L | 8197879..8198082 | 558..761 | 100 | -> | Minus |
arm_2L | 8198149..8198548 | 158..557 | 100 | -> | Minus |
arm_2L | 8198613..8198756 | 11..157 | 97 | | Minus |
BO04624.5prime Sequence
846 bp (842 high quality bases) assembled on 2005-12-01
> BO04624.5prime
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGG
BO04624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-PA | 1209 | CG8460-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-RA | 1368 | CG8460-RA | 95..930 | 11..846 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8197287..8197565 | 11..289 | 1380 | 99.6 | Plus |
2L | 23513712 | 2L | 8197877..8198082 | 478..683 | 1030 | 100 | Plus |
2L | 23513712 | 2L | 8197632..8197821 | 290..479 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8198148..8198311 | 683..846 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:37 has no hits.
BO04624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:15 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:10 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:24 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 92..930 | 8..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:37 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 92..930 | 8..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:37 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8197284..8197565 | 8..289 | 99 | -> | Plus |
2L | 8197632..8197821 | 290..479 | 100 | -> | Plus |
2L | 8197879..8198082 | 480..683 | 100 | -> | Plus |
2L | 8198149..8198311 | 684..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:24 Download gff for
BO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8197284..8197565 | 8..289 | 99 | -> | Plus |
arm_2L | 8197632..8197821 | 290..479 | 100 | -> | Plus |
arm_2L | 8197879..8198082 | 480..683 | 100 | -> | Plus |
arm_2L | 8198149..8198311 | 684..846 | 100 | | Plus |
BO04624.complete Sequence
1240 bp (1240 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629815
> BO04624.complete
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGAGCA
AATGCACCATTATATTTCGTCCGTAAGGCTGTGGAGACAATAGCTCCAGA
AGGTTGCGCTGATATGACGGCTAAGAGGGCTAAAATTCTGTTGGGACTGA
ATATGTACGGGAATGATTACACGCCCGATGGAGGTGGACCCATCACCTTC
TCCCAGTACTTGGATCTAGTCAGGCATGTGAAGAAGCACCTAACTTACGA
TGAGCGGGATGTGGAAAATTTCTTTGAAATCAAAAACGATGACGGTCGCC
ACATTGTCTTTTATCCCACTCTCTATTCCATAAACGAGCGAATAAAGCTC
GCCCAGGAACTGGGCACTGGCATTTCAATCTGGGAACTTGGCCAAGGCCT
AAACTATTTTTACGATCTCTTCGCAAGCTTTCTAGACCAT
BO04624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-RA | 1209 | CG8460-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-RA | 1368 | CG8460-RA | 95..1306 | 11..1222 | 6045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8198148..8198548 | 683..1083 | 2005 | 100 | Plus |
2L | 23513712 | 2L | 8197287..8197565 | 11..289 | 1380 | 99.6 | Plus |
2L | 23513712 | 2L | 8197877..8198082 | 478..683 | 1030 | 100 | Plus |
2L | 23513712 | 2L | 8197632..8197821 | 290..479 | 950 | 100 | Plus |
2L | 23513712 | 2L | 8198609..8198751 | 1080..1222 | 700 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:56:30 has no hits.
BO04624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:25 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 1..1209 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:13 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 89..1308 | 8..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:17 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 101..1306 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:25 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 89..1308 | 8..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:24 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8460-RA | 101..1306 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:24 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8198149..8198548 | 684..1083 | 100 | -> | Plus |
2L | 8198613..8198751 | 1084..1224 | 98 | | Plus |
2L | 8197293..8197565 | 17..289 | 100 | -> | Plus |
2L | 8197632..8197821 | 290..479 | 100 | -> | Plus |
2L | 8197879..8198082 | 480..683 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:17 Download gff for
BO04624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8197293..8197565 | 17..289 | 100 | -> | Plus |
arm_2L | 8197632..8197821 | 290..479 | 100 | -> | Plus |
arm_2L | 8197879..8198082 | 480..683 | 100 | -> | Plus |
arm_2L | 8198149..8198548 | 684..1083 | 100 | -> | Plus |
arm_2L | 8198613..8198751 | 1084..1224 | 98 | | Plus |
BO04624.pep Sequence
Translation from 16 to 1240
> BO04624.pep
MRAPDALLLRVALLLLLLTTVRGTLAPDSHKSKSKTKESALRGGPQDQDV
FDLGLVSPEPLAKDIVSNHRGYFKETGLRRFNGTTLGYVTPWNSHGYDVA
KIFAKKFDIISPVWLQIVKQGDRYAVAGTHDIDAGWLTDVRRKGKQVHNQ
RTVKVFPRFIFDHFTDRDIKLLLSDAQERTKVNDVLIKCCKDNGFDGLVL
EVWSQLAGRIDDKILYTLVLQMAKELQKQQLRLILVIPPFRKETGHLFGE
KHMDKLFKHIYAFSLMTYDFSSVQRPGANAPLYFVRKAVETIAPEGCADM
TAKRAKILLGLNMYGNDYTPDGGGPITFSQYLDLVRHVKKHLTYDERDVE
NFFEIKNDDGRHIVFYPTLYSINERIKLAQELGTGISIWELGQGLNYFYD
LFASFLDH
BO04624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8460-PA | 402 | CG8460-PA | 1..402 | 1..402 | 2112 | 100 | Plus |