Clone BO04625 Report

Search the DGRC for BO04625

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG33213-RA
Protein status:BO04625.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO04625.3prime Sequence

806 bp (804 high quality bases) assembled on 2005-12-01

> BO04625.3prime
ATGGTCTAGAAAGCTTGCTAGCTCCTTCTTGAGGACCCTGGACAGCCGTC
TAAAATGGCCAAGGATGCACTGTCTCCGGTGCCGCAGGCATACCCGCTCG
CTGCTGAAACGCTTCAAGCAAACTGAGCAACGTCTGGGATCACCTCTTCC
ATTGGGCAACCCGTTGTGTTCGCGAAATAGGACGACCACTTTCGCCTTGG
CACAACTCTGTTCTTTTTTTCGGTGTACCAAAAGAGAGGTGGTGGTCTTG
AAGTAACGTTTGCACTGAAGACATCTGTAGCACTTCCTGCCGCTATGGTT
TCTCAGGTGCCTGAGCAACTGCATCTCTGAGTGGCTCATGGCGTTGCAGA
GTAGATGTGGGCATTTAAAGAGCATCGATGACTTCCTGGGCGCTAGAGCG
GGACAGCTCAGACTGTGTTGCTTCAATTGTTTCTGGTGGTCCAGACGCTG
ACCACAGCGAAAGCACAGAGCACCAGGTCCATAGTGCGCGGTCATGTGGC
TCTGGTGCTCCAGCAAGGTTTTGGCCACATCGCCGCACACCGCGCACTCC
ATCATGCCGTTGGGAAATATGAATGTGTTCTCGCTCACGTAGGTGAGAAA
TTTGTCGGAATTGGAGGCCTCAGAACCGGTATCCTTTGGCCGTTCCTCTG
GTAAATACCACTCCTCCGAATCGCGACGGCATTGAATGCCCGCATCCTTA
GTGCCCGCATTCTCTGTTTGAATGGCGCGCTCTCTGCGCGGCACCATAGC
CTCGTTCGCAAACATTCCAGTGACCTCGTTGAGTCTCTTCTGCTGTACGG
ATTTCT

BO04625.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 1026 CG33213-RA 236..1023 806..19 3940 100 Minus
CG33221-PA 1314 CG33221-RA 728..1147 602..183 1500 94.2 Minus
CG33221-PA 1314 CG33221-RA 1161..1311 169..19 530 94 Minus
CG33221-PA 1314 CG33221-RA 589..723 741..607 525 95.5 Minus
CG33221-PA 1314 CG33221-RA 283..331 741..693 220 97.9 Minus
CG33221-PA 1314 CG33221-RA 236..282 806..760 160 93.6 Minus
CG33221-PA 1314 CG33221-RA 542..588 806..760 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 413..1200 806..19 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918261..27919048 19..806 3940 100 Plus
X 23542271 X 3797585..3798307 19..741 2910 93.5 Plus
X 23542271 X 3798561..3798613 689..741 235 96.2 Plus
X 23542271 X 3798614..3798660 760..806 190 93.6 Plus
Blast to na_te.dros performed on 2015-02-13 05:37:12 has no hits.

BO04625.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:16 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 236..1026 16..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:11 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 236..1026 16..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:34 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 426..1217 15..806 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:42 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 413..1204 15..806 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:42 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27918257..27919048 15..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:34 Download gff for BO04625.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23743979..23744770 15..806 99   Plus

BO04625.5prime Sequence

857 bp (855 high quality bases) assembled on 2005-12-01

> BO04625.5prime
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTG

BO04625.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 1026 CG33213-RA 1..841 17..857 4205 100 Plus
CG33221-PA 1314 CG33221-RA 728..1124 456..852 1410 94.2 Plus
CG33221-PA 1314 CG33221-RA 589..723 317..451 525 95.5 Plus
CG33221-PA 1314 CG33221-RA 98..282 114..298 525 91.3 Plus
CG33221-PA 1314 CG33221-RA 401..588 111..298 490 90.4 Plus
CG33221-PA 1314 CG33221-RA 1..61 17..77 255 96.7 Plus
CG33221-PA 1314 CG33221-RA 283..331 317..365 220 97.9 Plus
CG33221-PA 1314 CG33221-RA 336..367 46..77 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 174..1018 13..857 4210 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918443..27919287 857..13 4210 99.9 Minus
X 23542271 X 3797767..3798565 857..41 2805 89.8 Minus
X 23542271 X 3798561..3798899 369..13 940 84.9 Minus
Blast to na_te.dros performed on 2015-02-13 05:37:25 has no hits.

BO04625.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:17 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:12 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:36 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 184..1031 9..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:00 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 171..1018 9..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:00 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27918443..27919290 9..857 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:36 Download gff for BO04625.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23744165..23745012 9..857 99   Minus

BO04625.complete Sequence

1057 bp (1057 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629816

> BO04625.complete
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTGCCAAGGCGAAAGTGGTCGTCCTATTTCGCGAACACAACGGGTT
GCCCAATGGAAGAGGTGATCCCAGACGTTGCTCAGTTTGCTTGAAGCGTT
TCAGCAGCGAGCGGGTATGCCTGCGGCACCGGAGACAGTGCATCCTTGGC
CATTTTAGACGGCTGTCCAGGGTCCTCAAGAAGGAGCTAGCAAGCTTTCT
AGACCAT

BO04625.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1026 CG33213-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-RA 1279 CG33213-RA 174..1200 13..1039 5120 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27918261..27919287 1039..13 5120 99.9 Minus
X 23542271 X 3797585..3798565 1039..41 3505 90.3 Minus
X 23542271 X 3798561..3798899 369..13 940 84.9 Minus
Blast to na_te.dros performed on 2014-11-26 15:50:05 has no hits.

BO04625.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:03 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:02 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 156..1189 9..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:42 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 191..1213 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:03 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 156..1189 9..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:46 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
CG33213-RA 178..1200 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:46 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27918258..27919283 17..1041 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:42 Download gff for BO04625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23743980..23745005 17..1041 99   Minus

BO04625.pep Sequence

Translation from 16 to 1057

> BO04625.pep
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKELASFLDH

BO04625.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33213-PA 341 CG33213-PA 1..341 1..341 1832 100 Plus