Clone Sequence Records
BO04625.3prime Sequence
806 bp (804 high quality bases) assembled on 2005-12-01
> BO04625.3prime
ATGGTCTAGAAAGCTTGCTAGCTCCTTCTTGAGGACCCTGGACAGCCGTC
TAAAATGGCCAAGGATGCACTGTCTCCGGTGCCGCAGGCATACCCGCTCG
CTGCTGAAACGCTTCAAGCAAACTGAGCAACGTCTGGGATCACCTCTTCC
ATTGGGCAACCCGTTGTGTTCGCGAAATAGGACGACCACTTTCGCCTTGG
CACAACTCTGTTCTTTTTTTCGGTGTACCAAAAGAGAGGTGGTGGTCTTG
AAGTAACGTTTGCACTGAAGACATCTGTAGCACTTCCTGCCGCTATGGTT
TCTCAGGTGCCTGAGCAACTGCATCTCTGAGTGGCTCATGGCGTTGCAGA
GTAGATGTGGGCATTTAAAGAGCATCGATGACTTCCTGGGCGCTAGAGCG
GGACAGCTCAGACTGTGTTGCTTCAATTGTTTCTGGTGGTCCAGACGCTG
ACCACAGCGAAAGCACAGAGCACCAGGTCCATAGTGCGCGGTCATGTGGC
TCTGGTGCTCCAGCAAGGTTTTGGCCACATCGCCGCACACCGCGCACTCC
ATCATGCCGTTGGGAAATATGAATGTGTTCTCGCTCACGTAGGTGAGAAA
TTTGTCGGAATTGGAGGCCTCAGAACCGGTATCCTTTGGCCGTTCCTCTG
GTAAATACCACTCCTCCGAATCGCGACGGCATTGAATGCCCGCATCCTTA
GTGCCCGCATTCTCTGTTTGAATGGCGCGCTCTCTGCGCGGCACCATAGC
CTCGTTCGCAAACATTCCAGTGACCTCGTTGAGTCTCTTCTGCTGTACGG
ATTTCT
BO04625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 1026 | CG33213-RA | 236..1023 | 806..19 | 3940 | 100 | Minus |
CG33221-PA | 1314 | CG33221-RA | 728..1147 | 602..183 | 1500 | 94.2 | Minus |
CG33221-PA | 1314 | CG33221-RA | 1161..1311 | 169..19 | 530 | 94 | Minus |
CG33221-PA | 1314 | CG33221-RA | 589..723 | 741..607 | 525 | 95.5 | Minus |
CG33221-PA | 1314 | CG33221-RA | 283..331 | 741..693 | 220 | 97.9 | Minus |
CG33221-PA | 1314 | CG33221-RA | 236..282 | 806..760 | 160 | 93.6 | Minus |
CG33221-PA | 1314 | CG33221-RA | 542..588 | 806..760 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 413..1200 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918261..27919048 | 19..806 | 3940 | 100 | Plus |
X | 23542271 | X | 3797585..3798307 | 19..741 | 2910 | 93.5 | Plus |
X | 23542271 | X | 3798561..3798613 | 689..741 | 235 | 96.2 | Plus |
X | 23542271 | X | 3798614..3798660 | 760..806 | 190 | 93.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:37:12 has no hits.
BO04625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:16 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 236..1026 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:11 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 236..1026 | 16..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:34 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 426..1217 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:42 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 413..1204 | 15..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:42 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918257..27919048 | 15..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:34 Download gff for
BO04625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23743979..23744770 | 15..806 | 99 | | Plus |
BO04625.5prime Sequence
857 bp (855 high quality bases) assembled on 2005-12-01
> BO04625.5prime
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTG
BO04625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 1026 | CG33213-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
CG33221-PA | 1314 | CG33221-RA | 728..1124 | 456..852 | 1410 | 94.2 | Plus |
CG33221-PA | 1314 | CG33221-RA | 589..723 | 317..451 | 525 | 95.5 | Plus |
CG33221-PA | 1314 | CG33221-RA | 98..282 | 114..298 | 525 | 91.3 | Plus |
CG33221-PA | 1314 | CG33221-RA | 401..588 | 111..298 | 490 | 90.4 | Plus |
CG33221-PA | 1314 | CG33221-RA | 1..61 | 17..77 | 255 | 96.7 | Plus |
CG33221-PA | 1314 | CG33221-RA | 283..331 | 317..365 | 220 | 97.9 | Plus |
CG33221-PA | 1314 | CG33221-RA | 336..367 | 46..77 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 174..1018 | 13..857 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918443..27919287 | 857..13 | 4210 | 99.9 | Minus |
X | 23542271 | X | 3797767..3798565 | 857..41 | 2805 | 89.8 | Minus |
X | 23542271 | X | 3798561..3798899 | 369..13 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:37:25 has no hits.
BO04625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:17 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:12 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:36 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 184..1031 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:00 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 171..1018 | 9..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:00 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918443..27919290 | 9..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:36 Download gff for
BO04625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23744165..23745012 | 9..857 | 99 | | Minus |
BO04625.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629816
> BO04625.complete
GAAGTTATCAGTCGACATGTACCCGGCGCAACCGGCAAAGGTGGCGTTGG
CCGGTCAACCGATATCCGCCGGAAAACCACCACGCCACAGCCCTGTTCAG
ATGAAGTCTATCCCTTTGCCCGTCTTCGAGCTGCCGGAATACGTGTGCGT
GGAGACCAAGTGGGTGACACGCAAGTACGCGATAGAGAATGGCATTCCAG
TGAAAGAACTGCATGCCCCGATCACCAATGGAGGCGCTACAGAGTCTCCC
AAGAAATCCGTACAGCAGAAGAGACTCAACGAGGTCACTGGAATGTTTGC
GAACGAGGCTATGGTGCCGCGCAGAGAGCGCGCCATTCAAACAGAGAATG
CGGGCACTAAGGATGCGGGCATTCAATGCCGTCGCGATTCGGAGGAGTGG
TATTTACCAGAGGAACGGCCAAAGGATACCGGTTCTGAGGCCTCCAATTC
CGACAAATTTCTCACCTACGTGAGCGAGAACACATTCATATTTCCCAACG
GCATGATGGAGTGCGCGGTGTGCGGCGATGTGGCCAAAACCTTGCTGGAG
CACCAGAGCCACATGACCGCGCACTATGGACCTGGTGCTCTGTGCTTTCG
CTGTGGTCAGCGTCTGGACCACCAGAAACAATTGAAGCAACACAGTCTGA
GCTGTCCCGCTCTAGCGCCCAGGAAGTCATCGATGCTCTTTAAATGCCCA
CATCTACTCTGCAACGCCATGAGCCACTCAGAGATGCAGTTGCTCAGGCA
CCTGAGAAACCATAGCGGCAGGAAGTGCTACAGATGTCTTCAGTGCAAAC
GTTACTTCAAGACCACCACCTCTCTTTTGGTACACCGAAAAAAAGAACAG
AGTTGTGCCAAGGCGAAAGTGGTCGTCCTATTTCGCGAACACAACGGGTT
GCCCAATGGAAGAGGTGATCCCAGACGTTGCTCAGTTTGCTTGAAGCGTT
TCAGCAGCGAGCGGGTATGCCTGCGGCACCGGAGACAGTGCATCCTTGGC
CATTTTAGACGGCTGTCCAGGGTCCTCAAGAAGGAGCTAGCAAGCTTTCT
AGACCAT
BO04625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1026 | CG33213-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-RA | 1279 | CG33213-RA | 174..1200 | 13..1039 | 5120 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27918261..27919287 | 1039..13 | 5120 | 99.9 | Minus |
X | 23542271 | X | 3797585..3798565 | 1039..41 | 3505 | 90.3 | Minus |
X | 23542271 | X | 3798561..3798899 | 369..13 | 940 | 84.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:50:05 has no hits.
BO04625.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:03 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:02 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 156..1189 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:42 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 191..1213 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:03 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 156..1189 | 9..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:46 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33213-RA | 178..1200 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:46 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27918258..27919283 | 17..1041 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:42 Download gff for
BO04625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23743980..23745005 | 17..1041 | 99 | | Minus |
BO04625.pep Sequence
Translation from 16 to 1057
> BO04625.pep
MYPAQPAKVALAGQPISAGKPPRHSPVQMKSIPLPVFELPEYVCVETKWV
TRKYAIENGIPVKELHAPITNGGATESPKKSVQQKRLNEVTGMFANEAMV
PRRERAIQTENAGTKDAGIQCRRDSEEWYLPEERPKDTGSEASNSDKFLT
YVSENTFIFPNGMMECAVCGDVAKTLLEHQSHMTAHYGPGALCFRCGQRL
DHQKQLKQHSLSCPALAPRKSSMLFKCPHLLCNAMSHSEMQLLRHLRNHS
GRKCYRCLQCKRYFKTTTSLLVHRKKEQSCAKAKVVVLFREHNGLPNGRG
DPRRCSVCLKRFSSERVCLRHRRQCILGHFRRLSRVLKKELASFLDH
BO04625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33213-PA | 341 | CG33213-PA | 1..341 | 1..341 | 1832 | 100 | Plus |