Clone BO04632 Report

Search the DGRC for BO04632

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG11178-RA
Protein status:BO04632.pep: Imported from assembly
Sequenced Size:2155

Clone Sequence Records

BO04632.3prime Sequence

893 bp (748 high quality bases) assembled on 2005-12-01

> BO04632.3prime
ATGGTCTAGAAAGCTTGCGACAATGAAGACATCGCCACTGCTGCGCTCCA
CGGCCGAGGTGGCCACATCGCCGCCACATCCTGGCCGACCGGCTTGGCTT
GCAGCCGCAATCTTGGGCTCCTCCGATTGCGCAGTTTTGTCCAACAGCTC
CGCCTCGCGTCCAATCTCGACGATGCCTTGCGGCTTGTCGCAGCTGACGC
TCTGTGACTCGTGCGACTCGTGTGCCTCTTCCTGGCCAGCCAGGTGGATG
CTGACTCCCGCCACGTCAAGGTCTTCGACGTCCTTATGATTCTGGAATGT
AACTGAGATCTCTTGGGCTGCAGCTCCTTCGCTTACATCCCCTTCCTGCC
CATTCGAGCTGCTGGTCGCAGGCCCTGCATTTGTTGCATTGGGCGGGGCC
GTCGTGATGGATGACCACCAGCTGGAGAAGGCGCCCTTGGCCTGGGATAT
GGCACCGCCCACTGCACGACTCGTCGTGTTTACCGCCTGGTTGATTTTTC
GCCCACTCTCGCTATTTTGCATGGTTTGTGCTAGTTTTAGTTTCATGTCC
GCCACGGACAAGGTGCCGGCGAAGGGATGACCAGCGGGCAGGGCCTCAAA
GAACTCGGGTTCGGGCCTAACGTCGTACCATTCCTGAAAGCATTGGGTGC
GCTTGAAGGCGCCCATGAAGTGCGCATTGAAATGATCGTTGTCCTTTGGC
GTGGCATCTGGAGCCACAGCAGTTCGCAAGAGTGCGAGAATATAGCCCTG
AAACTGCTCCCGTATCCAGTACTCGCTGCCCTCGGCATCCTCCTTTGGCG
ATTGCACATGCTTCATGATGTAGTCCATGTAGCGCAGATCCTCGGTGCTC
AGCACCAGCTGACGCCTGAGCTCCGGATCGTGGGCATCCAGAT

BO04632.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-PA 2124 CG11178-RA 1247..2121 893..19 4375 100 Minus
CG11178-PB 2124 CG11178-RB 1247..2121 893..19 4375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-RC 3279 CG11178-RC 1784..2658 893..19 4375 100 Minus
CG11178-RB 3043 CG11178-RB 1548..2422 893..19 4375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13608401..13608908 526..19 2540 100 Minus
X 23542271 X 13607899..13608084 893..708 930 100 Minus
X 23542271 X 13608149..13608332 710..527 920 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:00:33 has no hits.

BO04632.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:22 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-PA 1247..2124 16..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:20 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-PB 1247..2124 16..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:54 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1548..2422 19..893 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:53 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 1548..2422 19..893 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:53 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13607899..13608084 708..893 100 -> Minus
X 13608152..13608332 527..707 100 -> Minus
X 13608401..13608908 19..526 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:54 Download gff for BO04632.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13501932..13502117 708..893 100 -> Minus
arm_X 13502185..13502365 527..707 100 -> Minus
arm_X 13502434..13502941 19..526 100   Minus

BO04632.5prime Sequence

939 bp (885 high quality bases) assembled on 2005-12-01

> BO04632.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGCCGGAGAACAAGCCACCGATCC
TGCACATCCTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAG
TTCTCGCATCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCC
CTCCGGCTGGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATA
ACTTTGCCGAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCG
GCTGAGAGTATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAA
GCTAAAGATCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCG
TTTGCATATTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTA
GCCCTCATTGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGA
ACTGCTGGCCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACG
AGTCGCGCCGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAG
ATCGTACTCCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCT
GCTGCAGCGACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTG
TGCTGATCCTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGC
TTCCAGGAGGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCC
GGATTTCACTGACTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGG
AACTGGAGGCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAAACTG
ACGCCCGAGAGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGCCCT
CGTCTCATCCGCAGCGTCGGCGGGCGAGGAGCAGGTCAG

BO04632.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-PA 2124 CG11178-RA 1..923 17..939 4615 100 Plus
CG11178-PB 2124 CG11178-RB 1..923 17..939 4615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-RC 3279 CG11178-RC 538..1460 17..939 4615 100 Plus
CG11178-RB 3043 CG11178-RB 302..1224 17..939 4615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13606445..13607367 17..939 4615 100 Plus
Blast to na_te.dros performed on 2015-02-12 14:07:08 has no hits.

BO04632.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:23 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-PA 1..923 17..939 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:21 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-PB 1..923 17..939 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:04:58 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 297..1224 9..939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:52 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 297..1224 9..939 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:52 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13606440..13607367 9..939 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:04:58 Download gff for BO04632.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13500473..13501400 9..939 99   Plus

BO04632.complete Sequence

2155 bp assembled on 2008-08-14

GenBank Submission: FJ629817

> BO04632.complete
GAAGTTATCAGTCGACATGGCCAGCGAGCCGGAGAACAAGCCACCGATCC
TGCACATCCTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAG
TTCTCGCATCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCC
CTCCGGCTGGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATA
ACTTTGCCGAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCG
GCTGAGAGTATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAA
GCTAAAGATCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCG
TTTGCATATTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTA
GCCCTCATTGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGA
ACTGCTGGCCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACG
AGTCGCGCCGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAG
ATCGTACTCCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCT
GCTGCAGCGACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTG
TGCTGATCCTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGC
TTCCAGGAGGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCC
GGATTTCACTGACTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGG
AACTGGAGGCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAAACTG
ACGCCCGAGAGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGCCCT
CGTCTCATCCGCAGCGTCGGCGGGCGAGGAGCAGGTCAGTGGCGATGACA
CGTCGACGCGTTCCACGCCCAACTCACAGTCGCAGGACTCATCGAACGGC
AGGAACAGCTCGCTGACCAGAGAGGCCAGCGTGGACACACTAGCGTCCAA
CCTCGCCGCCTTGTGCGCTGTCAATCCGGATGAGTATCGGGCACCGGTCA
GCATCTTCGCCAGCGGCAACCTCTGCCTGCCGTATCTGTCGCTACCGTAC
ATGGACCTGCTCAGCGATCCCATGGTGCTCTCCTATGTCATCGGCACCTC
CAACGTGCTTTTCCAGCAGAAACGTCAGCTGGCTGACGTCCTGGTGGACA
TCGAGGCGGCCAATCTGGATGCCCACGATCCGGAGCTCAGGCGTCAGCTG
GTGCTGAGCACCGAGGATCTGCGCTACATGGACTACATCATGAAGCATGT
GCAATCGCCAAAGGAGGATGCCGAGGGCAGCGAGTACTGGATACGGGAGC
AGTTTCAGGGCTATATTCTCGCACTCTTGCGAACTGCTGTGGCTCCAGAT
GCCACGCCAAAGGACAACGATCATTTCAATGCGCACTTCATGGGCGCCTT
CAAGCGCACCCAATGCTTTCAGGAATGGTACGACGTTAGGCCCGAACCCG
AGTTCTTTGAGGCCCTGCCCGCTGGTCATCCCTTCGCCGGCACCTTGTCC
GTGGCGGACATGAAACTAAAACTAGCACAAACCATGCAAAATAGCGAGAG
TGGGCGAAAAATCAACCAGGCGGTAAACACGACGAGTCGTGCAGTGGGCG
GTGCCATATCCCAGGCCAAGGGCGCCTTCTCCAGCTGGTGGTCATCCATC
ACGACGGCCCCGCCCAATGCAACAAATGCAGGGCCTGCGACCAGCAGCTC
GAATGGGCAGGAAGGGGATGTAAGCGAAGGAGCTGCAGCCCAAGAGATCT
CAGTTACATTCCAGAATCATAAGGACGTCGAAGACCTTGACGTGGCGGGA
GTCAGCATCCACCTGGCTGGCCAGGAAGAGGCACACGAGTCGCACGAGTC
ACAGAGCGTCAGCTGCGACAAGCCGCAAGGCATCGTCGAGATTGGACGCG
AGGCGGAGCTGTTGGACAAAACTGCGCAATCGGAGGAGCCCAAGATTGCG
GCTGCAAGCCAAGCCGGTCGGCCAGGATGTGGCGGCGATGTGGCCACCTC
GGCCGTGGAGCGCAGCAGTGGCGATGTCTTCATTGTCGCAAGCTTTCTAG
ACCAT

BO04632.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-RC 2124 CG11178-PC 1..2121 17..2137 10605 100 Plus
CG11178-RB 2124 CG11178-PB 1..2121 17..2137 10605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-RC 3279 CG11178-RC 538..2658 17..2137 10605 100 Plus
CG11178-RB 3043 CG11178-RB 302..2422 17..2137 10605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13606445..13607474 17..1046 5150 100 Plus
X 23542271 X 13608401..13608908 1630..2137 2540 100 Plus
X 23542271 X 13607683..13608084 1047..1448 2010 100 Plus
X 23542271 X 13608149..13608332 1446..1629 920 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:44:27 has no hits.

BO04632.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:56 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 270..2395 9..2137 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:11 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 302..2422 17..2139 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:22 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 275..2395 17..2139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:06 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
CG11178-RB 302..2422 17..2139 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:06 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
X 13607683..13608084 1047..1448 100 -> Plus
X 13606445..13607474 17..1046 100 -> Plus
X 13608152..13608332 1449..1629 100 -> Plus
X 13608401..13608908 1630..2139 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:11 Download gff for BO04632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13500478..13501507 17..1046 100 -> Plus
arm_X 13501716..13502117 1047..1448 100 -> Plus
arm_X 13502185..13502365 1449..1629 100 -> Plus
arm_X 13502434..13502941 1630..2139 99   Plus

BO04632.pep Sequence

Translation from 16 to 2155

> BO04632.pep
MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNECPSGWKY
LPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRT
ADLTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKA
YQQLNACLQDDESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRV
VCFGSPVRQMCVLILGMASLVPRLLEKGFQEVACVRTSRPLSPMPDFTDS
LQREAQAEAEAELEAVASVAAATDEQKLTPESATAVEGEAEELALVSSAA
SAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLTREASVDTLASNLAALC
AVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVIGTSNVLFQ
QKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE
DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQC
FQEWYDVRPEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKIN
QAVNTTSRAVGGAISQAKGAFSSWWSSITTAPPNATNAGPATSSSNGQEG
DVSEGAAAQEISVTFQNHKDVEDLDVAGVSIHLAGQEEAHESHESQSVSC
DKPQGIVEIGREAELLDKTAQSEEPKIAAASQAGRPGCGGDVATSAVERS
SGDVFIVASFLDH

BO04632.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11178-PC 707 CG11178-PC 1..707 1..707 3624 100 Plus
CG11178-PB 707 CG11178-PB 1..707 1..707 3624 100 Plus