Clone Sequence Records
BO04632.3prime Sequence
893 bp (748 high quality bases) assembled on 2005-12-01
> BO04632.3prime
ATGGTCTAGAAAGCTTGCGACAATGAAGACATCGCCACTGCTGCGCTCCA
CGGCCGAGGTGGCCACATCGCCGCCACATCCTGGCCGACCGGCTTGGCTT
GCAGCCGCAATCTTGGGCTCCTCCGATTGCGCAGTTTTGTCCAACAGCTC
CGCCTCGCGTCCAATCTCGACGATGCCTTGCGGCTTGTCGCAGCTGACGC
TCTGTGACTCGTGCGACTCGTGTGCCTCTTCCTGGCCAGCCAGGTGGATG
CTGACTCCCGCCACGTCAAGGTCTTCGACGTCCTTATGATTCTGGAATGT
AACTGAGATCTCTTGGGCTGCAGCTCCTTCGCTTACATCCCCTTCCTGCC
CATTCGAGCTGCTGGTCGCAGGCCCTGCATTTGTTGCATTGGGCGGGGCC
GTCGTGATGGATGACCACCAGCTGGAGAAGGCGCCCTTGGCCTGGGATAT
GGCACCGCCCACTGCACGACTCGTCGTGTTTACCGCCTGGTTGATTTTTC
GCCCACTCTCGCTATTTTGCATGGTTTGTGCTAGTTTTAGTTTCATGTCC
GCCACGGACAAGGTGCCGGCGAAGGGATGACCAGCGGGCAGGGCCTCAAA
GAACTCGGGTTCGGGCCTAACGTCGTACCATTCCTGAAAGCATTGGGTGC
GCTTGAAGGCGCCCATGAAGTGCGCATTGAAATGATCGTTGTCCTTTGGC
GTGGCATCTGGAGCCACAGCAGTTCGCAAGAGTGCGAGAATATAGCCCTG
AAACTGCTCCCGTATCCAGTACTCGCTGCCCTCGGCATCCTCCTTTGGCG
ATTGCACATGCTTCATGATGTAGTCCATGTAGCGCAGATCCTCGGTGCTC
AGCACCAGCTGACGCCTGAGCTCCGGATCGTGGGCATCCAGAT
BO04632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-PA | 2124 | CG11178-RA | 1247..2121 | 893..19 | 4375 | 100 | Minus |
CG11178-PB | 2124 | CG11178-RB | 1247..2121 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-RC | 3279 | CG11178-RC | 1784..2658 | 893..19 | 4375 | 100 | Minus |
CG11178-RB | 3043 | CG11178-RB | 1548..2422 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13608401..13608908 | 526..19 | 2540 | 100 | Minus |
X | 23542271 | X | 13607899..13608084 | 893..708 | 930 | 100 | Minus |
X | 23542271 | X | 13608149..13608332 | 710..527 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:00:33 has no hits.
BO04632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:22 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-PA | 1247..2124 | 16..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:20 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-PB | 1247..2124 | 16..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:54 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 1548..2422 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:53 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 1548..2422 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:53 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13607899..13608084 | 708..893 | 100 | -> | Minus |
X | 13608152..13608332 | 527..707 | 100 | -> | Minus |
X | 13608401..13608908 | 19..526 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:54 Download gff for
BO04632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13501932..13502117 | 708..893 | 100 | -> | Minus |
arm_X | 13502185..13502365 | 527..707 | 100 | -> | Minus |
arm_X | 13502434..13502941 | 19..526 | 100 | | Minus |
BO04632.5prime Sequence
939 bp (885 high quality bases) assembled on 2005-12-01
> BO04632.5prime
GAAGTTATCAGTCGACATGGCCAGCGAGCCGGAGAACAAGCCACCGATCC
TGCACATCCTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAG
TTCTCGCATCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCC
CTCCGGCTGGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATA
ACTTTGCCGAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCG
GCTGAGAGTATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAA
GCTAAAGATCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCG
TTTGCATATTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTA
GCCCTCATTGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGA
ACTGCTGGCCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACG
AGTCGCGCCGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAG
ATCGTACTCCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCT
GCTGCAGCGACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTG
TGCTGATCCTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGC
TTCCAGGAGGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCC
GGATTTCACTGACTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGG
AACTGGAGGCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAAACTG
ACGCCCGAGAGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGCCCT
CGTCTCATCCGCAGCGTCGGCGGGCGAGGAGCAGGTCAG
BO04632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-PA | 2124 | CG11178-RA | 1..923 | 17..939 | 4615 | 100 | Plus |
CG11178-PB | 2124 | CG11178-RB | 1..923 | 17..939 | 4615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-RC | 3279 | CG11178-RC | 538..1460 | 17..939 | 4615 | 100 | Plus |
CG11178-RB | 3043 | CG11178-RB | 302..1224 | 17..939 | 4615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13606445..13607367 | 17..939 | 4615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:07:08 has no hits.
BO04632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:23 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-PA | 1..923 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:21 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-PB | 1..923 | 17..939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:04:58 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 297..1224 | 9..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:52 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 297..1224 | 9..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:52 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13606440..13607367 | 9..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:04:58 Download gff for
BO04632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13500473..13501400 | 9..939 | 99 | | Plus |
BO04632.complete Sequence
2155 bp assembled on 2008-08-14
GenBank Submission: FJ629817
> BO04632.complete
GAAGTTATCAGTCGACATGGCCAGCGAGCCGGAGAACAAGCCACCGATCC
TGCACATCCTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAG
TTCTCGCATCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCC
CTCCGGCTGGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATA
ACTTTGCCGAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCG
GCTGAGAGTATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAA
GCTAAAGATCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCG
TTTGCATATTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTA
GCCCTCATTGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGA
ACTGCTGGCCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACG
AGTCGCGCCGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAG
ATCGTACTCCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCT
GCTGCAGCGACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTG
TGCTGATCCTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGC
TTCCAGGAGGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCC
GGATTTCACTGACTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGG
AACTGGAGGCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAAACTG
ACGCCCGAGAGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGCCCT
CGTCTCATCCGCAGCGTCGGCGGGCGAGGAGCAGGTCAGTGGCGATGACA
CGTCGACGCGTTCCACGCCCAACTCACAGTCGCAGGACTCATCGAACGGC
AGGAACAGCTCGCTGACCAGAGAGGCCAGCGTGGACACACTAGCGTCCAA
CCTCGCCGCCTTGTGCGCTGTCAATCCGGATGAGTATCGGGCACCGGTCA
GCATCTTCGCCAGCGGCAACCTCTGCCTGCCGTATCTGTCGCTACCGTAC
ATGGACCTGCTCAGCGATCCCATGGTGCTCTCCTATGTCATCGGCACCTC
CAACGTGCTTTTCCAGCAGAAACGTCAGCTGGCTGACGTCCTGGTGGACA
TCGAGGCGGCCAATCTGGATGCCCACGATCCGGAGCTCAGGCGTCAGCTG
GTGCTGAGCACCGAGGATCTGCGCTACATGGACTACATCATGAAGCATGT
GCAATCGCCAAAGGAGGATGCCGAGGGCAGCGAGTACTGGATACGGGAGC
AGTTTCAGGGCTATATTCTCGCACTCTTGCGAACTGCTGTGGCTCCAGAT
GCCACGCCAAAGGACAACGATCATTTCAATGCGCACTTCATGGGCGCCTT
CAAGCGCACCCAATGCTTTCAGGAATGGTACGACGTTAGGCCCGAACCCG
AGTTCTTTGAGGCCCTGCCCGCTGGTCATCCCTTCGCCGGCACCTTGTCC
GTGGCGGACATGAAACTAAAACTAGCACAAACCATGCAAAATAGCGAGAG
TGGGCGAAAAATCAACCAGGCGGTAAACACGACGAGTCGTGCAGTGGGCG
GTGCCATATCCCAGGCCAAGGGCGCCTTCTCCAGCTGGTGGTCATCCATC
ACGACGGCCCCGCCCAATGCAACAAATGCAGGGCCTGCGACCAGCAGCTC
GAATGGGCAGGAAGGGGATGTAAGCGAAGGAGCTGCAGCCCAAGAGATCT
CAGTTACATTCCAGAATCATAAGGACGTCGAAGACCTTGACGTGGCGGGA
GTCAGCATCCACCTGGCTGGCCAGGAAGAGGCACACGAGTCGCACGAGTC
ACAGAGCGTCAGCTGCGACAAGCCGCAAGGCATCGTCGAGATTGGACGCG
AGGCGGAGCTGTTGGACAAAACTGCGCAATCGGAGGAGCCCAAGATTGCG
GCTGCAAGCCAAGCCGGTCGGCCAGGATGTGGCGGCGATGTGGCCACCTC
GGCCGTGGAGCGCAGCAGTGGCGATGTCTTCATTGTCGCAAGCTTTCTAG
ACCAT
BO04632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-RC | 2124 | CG11178-PC | 1..2121 | 17..2137 | 10605 | 100 | Plus |
CG11178-RB | 2124 | CG11178-PB | 1..2121 | 17..2137 | 10605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-RC | 3279 | CG11178-RC | 538..2658 | 17..2137 | 10605 | 100 | Plus |
CG11178-RB | 3043 | CG11178-RB | 302..2422 | 17..2137 | 10605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13606445..13607474 | 17..1046 | 5150 | 100 | Plus |
X | 23542271 | X | 13608401..13608908 | 1630..2137 | 2540 | 100 | Plus |
X | 23542271 | X | 13607683..13608084 | 1047..1448 | 2010 | 100 | Plus |
X | 23542271 | X | 13608149..13608332 | 1446..1629 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:44:27 has no hits.
BO04632.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:56 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 270..2395 | 9..2137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:04:11 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 302..2422 | 17..2139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:22 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 275..2395 | 17..2139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:06 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11178-RB | 302..2422 | 17..2139 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:06 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13607683..13608084 | 1047..1448 | 100 | -> | Plus |
X | 13606445..13607474 | 17..1046 | 100 | -> | Plus |
X | 13608152..13608332 | 1449..1629 | 100 | -> | Plus |
X | 13608401..13608908 | 1630..2139 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:04:11 Download gff for
BO04632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13500478..13501507 | 17..1046 | 100 | -> | Plus |
arm_X | 13501716..13502117 | 1047..1448 | 100 | -> | Plus |
arm_X | 13502185..13502365 | 1449..1629 | 100 | -> | Plus |
arm_X | 13502434..13502941 | 1630..2139 | 99 | | Plus |
BO04632.pep Sequence
Translation from 16 to 2155
> BO04632.pep
MASEPENKPPILHILVVGFHHKLGCQVEFSHPPLISGSTGRNECPSGWKY
LPTLALPDGSHNFAEDTVFFNLPSLYEPAESIYGVSCYRQIRVEKLKIRT
ADLTRSTVQKSVCILARLPIYGYIEVKLALIADAFFDQGDFSGTELLAKA
YQQLNACLQDDESRRPLRHFHVGLSLREIVLHWRHKTLMLFKLMLLQRRV
VCFGSPVRQMCVLILGMASLVPRLLEKGFQEVACVRTSRPLSPMPDFTDS
LQREAQAEAEAELEAVASVAAATDEQKLTPESATAVEGEAEELALVSSAA
SAGEEQVSGDDTSTRSTPNSQSQDSSNGRNSSLTREASVDTLASNLAALC
AVNPDEYRAPVSIFASGNLCLPYLSLPYMDLLSDPMVLSYVIGTSNVLFQ
QKRQLADVLVDIEAANLDAHDPELRRQLVLSTEDLRYMDYIMKHVQSPKE
DAEGSEYWIREQFQGYILALLRTAVAPDATPKDNDHFNAHFMGAFKRTQC
FQEWYDVRPEPEFFEALPAGHPFAGTLSVADMKLKLAQTMQNSESGRKIN
QAVNTTSRAVGGAISQAKGAFSSWWSSITTAPPNATNAGPATSSSNGQEG
DVSEGAAAQEISVTFQNHKDVEDLDVAGVSIHLAGQEEAHESHESQSVSC
DKPQGIVEIGREAELLDKTAQSEEPKIAAASQAGRPGCGGDVATSAVERS
SGDVFIVASFLDH
BO04632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11178-PC | 707 | CG11178-PC | 1..707 | 1..707 | 3624 | 100 | Plus |
CG11178-PB | 707 | CG11178-PB | 1..707 | 1..707 | 3624 | 100 | Plus |