Clone Sequence Records
BO04633.3prime Sequence
959 bp (863 high quality bases) assembled on 2005-12-01
> BO04633.3prime
ATGGTCTAGAAAGCTTGCGATCATGTGCAGCTTCTGATCGTTGAGTTTGA
ATGCCGCCGCATCGCTATGGAGGTGAAAAGGCACAATATCACCTGTTGTG
GCCATATCAAATGATGGTGACATAGACGTTGCCGTTGCAGTTGCCGGACT
ATTGCTGCCACTGGTATTTGCGATGCCCGCCTTGAGATGTAGGCTGTCCA
TGGACATTTGCTGAGACTGCGTGTGAGGAAGGGGATTGGTGTGGATATGC
GGATGGGCTGGGGGATGAGTTATGCTCGCTGGGACGGTTGAGAGTTTTCC
TGAGTTTGTTGTGATTATTATGTTTCCGGCATGGGAAGCACCACGTCCAC
GTTTCCGCTTCGGAAGAATTCCTTTTCGCGCCATATAGAAACGAATGGTT
GAGACAGGAATATTGAACATATTGCTGACAGTTTGGAATGTCTCGCCCTT
CGAAACACATTTGGCCGCTTGTGCTAGAGATGCTTCTGAACGTCGAACGC
GCTTATATGAAGTATAACCATCGATCGAGCTATGGCTCAGTCCTCCGGAA
GTATTGGCCGATGTATCGAGATCAGTGTCAAGGCTGAGGGATAGCCCGGA
TCCGCATGGCACTCCTGTCGCAAAACTGCTGTCATTGTTTTCATCATGAG
CGGCCACATAGTTGTGGTCGTCCTCAACATTTGAATCCAAGTATTGCTGC
TGCTGAAGCTGCATTTGCATCCTCGCCTGCTGCAGGGATAGGTGGACATT
CATTTTGTTGTCAACGGCTTGCGCAGATATATTGCAATCATCGAATTGCT
CCCCGTAGGCATTCCAATTGTTCGGCACCTCGTCGCCGGAGTCATCCTCG
GTTGGTGCATTCGAGTGGCTGCCCAAACGTTCGTAGAGGTGGCCTTAGAT
GGCTGTTGAACATTACTGCCATTTAATCTGGGGTCCCTGCTGCACCTGCT
GCTGCTGCT
BO04633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-PB | 1545 | CG8924-RB | 684..1542 | 877..19 | 4295 | 100 | Minus |
CG8924-PA | 1545 | CG8924-RA | 684..1542 | 877..19 | 4295 | 100 | Minus |
CG8924-PB | 1545 | CG8924-RB | 635..685 | 925..875 | 230 | 98 | Minus |
CG8924-PA | 1545 | CG8924-RA | 635..685 | 925..875 | 230 | 98 | Minus |
CG8924-PB | 1545 | CG8924-RB | 602..635 | 959..926 | 145 | 97 | Minus |
CG8924-PA | 1545 | CG8924-RA | 602..635 | 959..926 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-RB | 2575 | CG8924-RB | 1238..2178 | 959..19 | 4630 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15943348..15944052 | 723..19 | 3525 | 100 | Minus |
X | 23542271 | X | 15943053..15943291 | 959..721 | 1070 | 98.3 | Minus |
Blast to na_te.dros performed 2015-02-13 00:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
baggins | 5453 | baggins BAGGINS 5453bp | 1368..1426 | 607..550 | 112 | 67.8 | Minus |
BO04633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:24 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-PA | 602..1545 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:23 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-PA | 602..1545 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:31:56 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 1238..2181 | 15..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:04 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 1238..2181 | 15..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:04 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15943053..15943290 | 722..959 | 98 | -> | Minus |
X | 15943350..15944055 | 15..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:31:56 Download gff for
BO04633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15837086..15837323 | 722..959 | 98 | -> | Minus |
arm_X | 15837383..15838088 | 15..721 | 99 | | Minus |
BO04633.5prime Sequence
935 bp (885 high quality bases) assembled on 2005-11-29
> BO04633.5prime
GAAGTTATCAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCT
GGAACAGCCATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCA
GGCCAGAGATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCA
CTGCCATCGTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATAC
TAGCGGAGCATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATC
AAGCTATGGGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGT
CAATGTCACGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAAC
TGCAGATTCGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAA
CTCCAGCAGGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGC
GCGAAGCTTCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTA
ATTCAACCACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCG
GTTAACCATCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCG
GCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGA
TAAATGGCAGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTT
TTGGGCAGCCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGT
GCCGAACAATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATAT
CTGCGCAAGCCGTTGACAACAAAATGAATGTCCACCTATCCCTGCAGCAN
GCGAGGATGCAAATGCAGCTTCAGCAGCAGCAATACTTGGGATCAAATGG
TGAGGACGACCACAACTATGTGGCCGCTCATGATG
BO04633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-PB | 1545 | CG8924-RB | 1..919 | 17..935 | 4501 | 99.5 | Plus |
CG8924-PA | 1545 | CG8924-RA | 1..919 | 17..935 | 4501 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-RB | 2575 | CG8924-RB | 637..1555 | 17..935 | 4539 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15942452..15943291 | 17..856 | 4189 | 99.9 | Plus |
X | 23542271 | X | 15943348..15943429 | 854..935 | 365 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:46:22 has no hits.
BO04633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:25 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:24 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:19 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 626..1555 | 5..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:41 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 626..1555 | 5..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:41 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15943350..15943429 | 856..935 | 96 | | Plus |
X | 15942441..15943290 | 5..855 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:19 Download gff for
BO04633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15836474..15837323 | 5..855 | 99 | -> | Plus |
arm_X | 15837383..15837462 | 856..935 | 96 | | Plus |
BO04633.complete Sequence
1576 bp (1576 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629818
> BO04633.complete
GAAGTTATCAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCT
GGAACAGCCATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCA
GGCCAGAGATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCA
CTGCCATCGTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATAC
TAGCGGAGCATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATC
AAGCTATGGGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGT
CAATGTCACGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAAC
TGCAGATTCGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAA
CTCCAGCAGGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGC
GCGAAGCTTCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTA
ATTCAACCACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCG
GTTAACCATCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCG
GCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGA
TAAATGGCAGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTT
TTGGGCAGCCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGT
GCCGAACAATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATAT
CTGCGCAAGCCGTTGACAACAAAATGAATGTCCACCTATCCCTGCAGCAG
GCGAGGATGCAAATGCAGCTTCAGCAGCAGCAATACTTGGATTCAAATGT
TGAGGACGACCACAACTATGTGGCCGCTCATGATGAAAACAATGACAGCA
GTTTTGCGACAGGAGTGCCATGCGGATCCGGGCTATCCCTCAGCCTTGAC
ACTGATCTCGATACATCGGCCAATACTTCCGGAGGACTGAGCCATAGCTC
GATCGATGGTTATACTTCATATAAGCGCGTTCGACGTTCAGAAGCATCTC
TAGCACAAGCGGCCAAATGTGTTTCGAAGGGCGAGACATTCCAAACTGTC
AGCAATATGTTCAATATTCCTGTCTCAACCATTCGTTTCTATATGGCGCG
AAAAGGAATTCTTCCGAAGCGGAAACGTGGACGTGGTGCTTCCCATGCCG
GAAACATAATAATCACAACAAACTCAGGAAAACTCTCAACCGTCCCAGCG
AGCATAACTCATCCCCCAGCCCATCCGCATATCCACACCAATCCCCTTCC
TCACACGCAGTCTCAGCAAATGTCCATGGACAGCCTACATCTCAAGGCGG
GCATCGCAAATACCAGTGGCAGCAATAGTCCGGCAACTGCAACGGCAACG
TCTATGTCACCATCATTTGATATGGCCACAACAGGTGATATTGTGCCTTT
TCACCTCCATAGCGATGCGGCGGCATTCAAACTCAACGATCAGAAGCTGC
ACATGATCGCAAGCTTTCTAGACCAT
BO04633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-RB | 1545 | CG8924-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-RB | 2575 | CG8924-RB | 637..2178 | 17..1558 | 7710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15942452..15943291 | 17..856 | 4200 | 100 | Plus |
X | 23542271 | X | 15943348..15944052 | 854..1558 | 3525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:03:39 has no hits.
BO04633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:59 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RA | 1..1545 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:58 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RA | 796..2351 | 5..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:50 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 637..2178 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:59 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RA | 796..2351 | 5..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:30 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8924-RB | 637..2178 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:30 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15942452..15943290 | 17..855 | 100 | -> | Plus |
X | 15943350..15944052 | 856..1560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:50 Download gff for
BO04633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15836485..15837323 | 17..855 | 100 | -> | Plus |
arm_X | 15837383..15838085 | 856..1560 | 99 | | Plus |
BO04633.pep Sequence
Translation from 16 to 1576
> BO04633.pep
MSGATQEFCVRWNSHLGSIGAAFPQLLAGQRFVDVTLACEGQQVHCHRLV
LAACSTYFEAILAEHPCKHPVIILPREIKLWEIQALVDFMYKGEVNVTQA
GLGQLLRCAEQLQIRGLYGSEAPINYKKLQQASLEAAKDPAATTARSFKH
VDSAETDDAATNSTTSTTMTTSSAPPLPVNHQQPTVLKRQNPDARQQQQQ
QQQQQVQQRPQINGSNAQQPSKATSTNVLGSHSNAPTEDDSGDEVPNNWN
AYGEQFDDCNISAQAVDNKMNVHLSLQQARMQMQLQQQQYLDSNVEDDHN
YVAAHDENNDSSFATGVPCGSGLSLSLDTDLDTSANTSGGLSHSSIDGYT
SYKRVRRSEASLAQAAKCVSKGETFQTVSNMFNIPVSTIRFYMARKGILP
KRKRGRGASHAGNIIITTNSGKLSTVPASITHPPAHPHIHTNPLPHTQSQ
QMSMDSLHLKAGIANTSGSNSPATATATSMSPSFDMATTGDIVPFHLHSD
AAAFKLNDQKLHMIASFLDH
BO04633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8924-PB | 514 | CG8924-PB | 1..514 | 1..514 | 2673 | 100 | Plus |
br-PL | 514 | CG11491-PL | 4..239 | 5..236 | 353 | 34.7 | Plus |
br-PJ | 514 | CG11491-PN | 4..239 | 5..236 | 353 | 34.7 | Plus |
br-PO | 663 | CG11491-PO | 4..239 | 5..236 | 353 | 34.7 | Plus |
br-PG | 663 | CG11491-PG | 4..239 | 5..236 | 353 | 34.7 | Plus |