Clone Sequence Records
BO04634.3prime Sequence
878 bp (875 high quality bases) assembled on 2005-12-01
> BO04634.3prime
ATGGTCTAGAAAGCTTGCAAGCATTTGAACAAATACAAGGCTGAGCAGTG
ATCCCACAGCCATGCCACAGCTCAAAGCAGCTGCCATTATCGACGAAGCC
AGCTCCTTTTCATGCTGCTTTACGCGTTTAGGCGCCATTATAAGTAGTAT
GTTCGTAAAATATCCGTTGGACAAGGCAAACATTACCATCATCGCTATGA
AAGTATAGTCGTGTTTTACCAAAACTGGCAGAAAGCTGTGTTCGCTGGAG
TTTGAACATAGAAATAACGGAACAAACGCCATGCGCACTACAATAAATAG
TAGCGAAGTGTTCTGGTTTAATGGTCGCTCCATCCAGCCAGCAAACAGAC
GACCAAAATAGTCACCGCAGTTAAATATCAGGTAGTTCACGACGGGCAGA
AAATAAACATCTGTCCACACGCTGTGGCCGTACTCTGACTGCATAAGCAC
TGTAACTGCCGGATAGACAGACAGGGTCGTGGTATAGAGGAGCGCTAGGG
AAATGGCATGCAGATAGATCTTCGACATGACCTGACGCAAAATAGGCTCA
AGCGGCAAGCCCTCAGCGCTTCCATTCCGGTTGTGCGAGGGCACTGCCCG
GATGACCTTGTACTTGTCGCCACCTTCGAGATAATACCTAAAGAAAGGCT
TTCGAGCCAGGATTACGTAGCACACAATGCAAAGCAGGATGAGCACTCCT
CCCACAATGAAGAAGATGAATGCAGTGGTATTGGGACCCGTGTCGAATGC
AAGCACAAGAATGAAGGCCAGGGCTGTGAGGATACCACCAAGAGCCTGTC
CGCTAACCACAGCGGTGATAAACTCGGAGGGAAATAGACCAGCGACTCCG
TAGAGGGCTCCCGACATTGTAGCCGCAG
BO04634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11907-PA | 1431 | Ent1-RA | 569..1428 | 878..19 | 4300 | 100 | Minus |
| CG11907-PB | 1431 | Ent1-RB | 569..1428 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-RC | 1905 | CG11907-RC | 690..1549 | 878..19 | 4300 | 100 | Minus |
| Ent1-RB | 1923 | CG11907-RB | 708..1567 | 878..19 | 4300 | 100 | Minus |
| Ent1-RA | 1972 | CG11907-RA | 757..1616 | 878..19 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 356367..356834 | 411..878 | 2340 | 100 | Plus |
| 2L | 23513712 | 2L | 355921..356316 | 19..414 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:27:08 has no hits.
BO04634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:26 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-PB | 569..1431 | 16..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:26 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11907-PB | 569..1431 | 16..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:19 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 757..1622 | 11..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:22 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 757..1622 | 11..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:22 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 355915..356312 | 11..410 | 99 | <- | Plus |
| 2L | 356367..356834 | 411..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:19 Download gff for
BO04634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 355915..356312 | 11..410 | 99 | <- | Plus |
| arm_2L | 356367..356834 | 411..878 | 100 | | Plus |
BO04634.5prime Sequence
809 bp (808 high quality bases) assembled on 2005-11-29
> BO04634.5prime
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTC
BO04634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11907-PA | 1431 | Ent1-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
| CG11907-PB | 1431 | Ent1-RB | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-RC | 1905 | CG11907-RC | 122..914 | 17..809 | 3965 | 100 | Plus |
| Ent1-RB | 1923 | CG11907-RB | 140..932 | 17..809 | 3965 | 100 | Plus |
| Ent1-RA | 1972 | CG11907-RA | 189..981 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 356891..357191 | 581..281 | 1505 | 100 | Minus |
| 2L | 23513712 | 2L | 357423..357686 | 280..17 | 1320 | 100 | Minus |
| 2L | 23513712 | 2L | 356610..356837 | 809..582 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:37:30 has no hits.
BO04634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:26 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-PB | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:27 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11907-PB | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:39 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 180..981 | 8..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:09 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 180..981 | 8..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:09 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 357423..357695 | 8..280 | 98 | | Minus |
| 2L | 356610..356837 | 582..809 | 100 | <- | Minus |
| 2L | 356891..357191 | 281..581 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:39 Download gff for
BO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 357423..357695 | 8..280 | 98 | | Minus |
| arm_2L | 356610..356837 | 582..809 | 100 | <- | Minus |
| arm_2L | 356891..357191 | 281..581 | 100 | <- | Minus |
BO04634.complete Sequence
1462 bp (1462 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629819
> BO04634.complete
GAAGTTATCAGTCGACATGCCAGGCACCAGTGACACACGACGACTGGTGG
ACGCCCTGGACGAGGATGACGAGATTCTGGGCACGGAGGGCAGCTTCGTT
CCCGCTTTTCGTCCGCAGGACCACCATGCGGATGAGCAATGTCTCATGGA
ACGCCAGCAGGACGAGGTAGTTTTGGTGTCCAACGAACCCGAGAGTGGAC
GACTCTTCACCTACCTCGTGTTCTACCTGTTGGGCATTGGTACCATGACC
CCGTGGAATTTCTTTGTGACTGCGGAAGATTACTGGAAGTACAAGTTCCG
GAATGCATCGATTAATAACACAGACCTGGAGGAAGAGCTCACCCCGTTGC
AGAAGAGTTTTACCTGCGACTTGGCTCTCACGGCCACTATTTCTGGGACT
ACATTTCTGCTGCTAAACGCCATTTTCGGACACCATGTGTCCCTGCGCAC
CAAGATGTTAGGAACGCTGTGGATGATCCTCATCCTTTTCGGGGTTACAA
CTGGCTTCGTGGAGATCAACACAGACACGTGGCAGGAACAGTTTTTCCTA
ATCACTCTCATCATTGTAGTGCTGCTAAATATATCTGCGGCTACAATGTC
GGGAGCCCTCTACGGAGTCGCTGGTCTATTTCCCTCCGAGTTTATCACCG
CTGTGGTTAGCGGACAGGCTCTTGGTGGTATCCTCACAGCCCTGGCCTTC
ATTCTTGTGCTTGCATTCGACACGGGTCCCAATACCACTGCATTCATCTT
CTTCATTGTGGGAGGAGTGCTCATCCTGCTTTGCATTGTGTGCTACGTAA
TCCTGGCTCGAAAGCCTTTCTTTAGGTATTATCTCGAAGGTGGCGACAAG
TACAAGGTCATCCGGGCAGTGCCCTCGCACAACCGGAATGGAAGCGCTGA
GGGCTTGCCGCTTGAGCCTATTTTGCGTCAGGTCATGTCGAAGATCTATC
TGCATGCCATTTCCCTAGCGCTCCTCTATACCACGACCCTGTCTGTCTAT
CCGGCAGTTACAGTGCTTATGCAGTCAGAGTACGGCCACAGCGTGTGGAC
AGATGTTTATTTTCTGCCCGTCGTGAACTACCTGATATTTAACTGCGGTG
ACTATTTTGGTCGTCTGTTTGCTGGCTGGATGGAGCGACCATTAAACCAG
AACACTTCGCTACTATTTATTGTAGTGCGCATGGCGTTTGTTCCGTTATT
TCTATGTTCAAACTCCAGCGAACACAGCTTTCTGCCAGTTTTGGTAAAAC
ACGACTATACTTTCATAGCGATGATGGTAATGTTTGCCTTGTCCAACGGA
TATTTTACGAACATACTACTTATAATGGCGCCTAAACGCGTAAAGCAGCA
TGAAAAGGAGCTGGCTTCGTCGATAATGGCAGCTGCTTTGAGCTGTGGCA
TGGCTGTGGGATCACTGCTCAGCCTTGTATTTGTTCAAATGCTTGCAAGC
TTTCTAGACCAT
BO04634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-RC | 1431 | CG11907-PC | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| Ent1-RB | 1431 | CG11907-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
| Ent1-RA | 1431 | CG11907-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-RC | 1905 | CG11907-RC | 122..1549 | 17..1444 | 7140 | 100 | Plus |
| Ent1-RB | 1923 | CG11907-RB | 140..1567 | 17..1444 | 7140 | 100 | Plus |
| Ent1-RA | 1972 | CG11907-RA | 189..1616 | 17..1444 | 7140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 356367..356837 | 1052..582 | 2355 | 100 | Minus |
| 2L | 23513712 | 2L | 355921..356316 | 1444..1049 | 1980 | 100 | Minus |
| 2L | 23513712 | 2L | 356891..357191 | 581..281 | 1505 | 100 | Minus |
| 2L | 23513712 | 2L | 357423..357686 | 280..17 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:43 has no hits.
BO04634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:26 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RB | 1..1431 | 17..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:14 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RB | 125..1567 | 8..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:04 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 189..1616 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:26 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RB | 125..1567 | 8..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:01 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent1-RA | 189..1616 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:01 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 355918..356312 | 1053..1446 | 99 | <- | Minus |
| 2L | 356367..356837 | 582..1052 | 100 | <- | Minus |
| 2L | 356891..357191 | 281..581 | 100 | <- | Minus |
| 2L | 357423..357686 | 17..280 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:04 Download gff for
BO04634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 357423..357686 | 17..280 | 100 | | Minus |
| arm_2L | 356367..356837 | 582..1052 | 100 | <- | Minus |
| arm_2L | 355918..356312 | 1053..1446 | 99 | <- | Minus |
| arm_2L | 356891..357191 | 281..581 | 100 | <- | Minus |
BO04634.pep Sequence
Translation from 16 to 1462
> BO04634.pep
MPGTSDTRRLVDALDEDDEILGTEGSFVPAFRPQDHHADEQCLMERQQDE
VVLVSNEPESGRLFTYLVFYLLGIGTMTPWNFFVTAEDYWKYKFRNASIN
NTDLEEELTPLQKSFTCDLALTATISGTTFLLLNAIFGHHVSLRTKMLGT
LWMILILFGVTTGFVEINTDTWQEQFFLITLIIVVLLNISAATMSGALYG
VAGLFPSEFITAVVSGQALGGILTALAFILVLAFDTGPNTTAFIFFIVGG
VLILLCIVCYVILARKPFFRYYLEGGDKYKVIRAVPSHNRNGSAEGLPLE
PILRQVMSKIYLHAISLALLYTTTLSVYPAVTVLMQSEYGHSVWTDVYFL
PVVNYLIFNCGDYFGRLFAGWMERPLNQNTSLLFIVVRMAFVPLFLCSNS
SEHSFLPVLVKHDYTFIAMMVMFALSNGYFTNILLIMAPKRVKQHEKELA
SSIMAAALSCGMAVGSLLSLVFVQMLASFLDH
BO04634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent1-PC | 476 | CG11907-PC | 1..476 | 1..476 | 2447 | 100 | Plus |
| Ent1-PB | 476 | CG11907-PB | 1..476 | 1..476 | 2447 | 100 | Plus |
| Ent1-PA | 476 | CG11907-PA | 1..476 | 1..476 | 2447 | 100 | Plus |
| Ent2-PA | 458 | CG31911-PA | 51..450 | 58..469 | 372 | 25.2 | Plus |
| Ent2-PB | 458 | CG31911-PB | 51..450 | 58..469 | 372 | 25.2 | Plus |
