Clone Sequence Records
BO04637.3prime Sequence
797 bp (796 high quality bases) assembled on 2005-12-01
> BO04637.3prime
ATGGTCTAGAAAGCTTGCTGGGTCCTCTGTGGATGTGGTTGCCTCTTGCG
CTTGCTGCTCTTGCTCCAGCTCCTGCTGCTGAGCCAATCGCAGACGCTTT
TTGGCCTGGATGTCGGCCAAAGTTTGTTCGATGGAGCGCACATCCTTCTT
ATTCTTGCTAGGCACGAATCCGTAGCTTTGGTTGGTCTCCGTCTTACGGG
CCGCCTGCAGTGCGGCCGACTCTCCGATGAGGTGGGCATACTTGGCCTTG
TAGTTGGTCGTGGGCTTAACTTCGCCGGAGTCCTGATCCGCTGATGTGGA
TGTGGACGAGCCTGAACTTGCTGCTTCGGATGTGGAGGCTTCTTTGTCAC
TTTGCTCCTGCGCCAATCGTTCCCGCCGTCGCTCCGCGTACTCCTTGGCT
ATCTCCTCGTTCCAACCGTCTCCGTTCCGACGGGCCGTGACCTCATCCTC
GCCAGGAGCGTGTTCCTTTTTGTACACAACCGAATGTCGGTCCACATCCT
CGCGGCCAAAGCTCATGGCAATGAAGCCGCCATTTTCGGCTACTTCGTGG
ATCACCGAGCGATGCACTTTATCCAGCGGCTGAAACTCGATGCATCGCCT
GTCGTCCTTGGCGAATCGCCCCATCCGTTCGTCTACATATTTTCGGAATC
GGAGGAGCTCCTCTTTCTGTTTGTTCTGCATCCGCTCTAACATTTCGCGC
TGTTTCTTGATCAGCGTCTTCTGTTGCTCGTTGTTGGCAGGCGGCGCATC
CATGGCGTTGAGTATTGAGTCGAGCAGATCCATGTCGACTGATAACT
BO04637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 768 | CG2608-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..955 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646859 | 783..19 | 3825 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6873 | 81..16 | 120 | 66.7 | Minus |
BO04637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:27 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:29 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 16..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:34:57 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 19..783 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:26:15 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 19..783 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:26:15 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646862 | 14..783 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:34:57 Download gff for
BO04637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646862 | 14..783 | 99 | -> | Minus |
BO04637.5prime Sequence
797 bp (796 high quality bases) assembled on 2005-11-29
> BO04637.5prime
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCAGCAAGCTTTCTAGACC
BO04637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 768 | CG2608-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..955 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646859 | 17..781 | 3825 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6873 | 719..784 | 120 | 66.7 | Plus |
BO04637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:28 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:30 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-PA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:24 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:57:45 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:57:45 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646862 | 17..786 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:24 Download gff for
BO04637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646862 | 17..786 | 99 | -> | Plus |
BO04637.complete Sequence
799 bp (799 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629820
> BO04637.complete
GAAGTTATCAGTCGACATGGATCTGCTCGACTCAATACTCAACGCCATGG
ATGCGCCGCCTGCCAACAACGAGCAACAGAAGACGCTGATCAAGAAACAG
CGCGAAATGTTAGAGCGGATGCAGAACAAACAGAAAGAGGAGCTCCTCCG
ATTCCGAAAATATGTAGACGAACGGATGGGGCGATTCGCCAAGGACGACA
GGCGATGCATCGAGTTTCAGCCGCTGGATAAAGTGCATCGCTCGGTGATC
CACGAAGTAGCCGAAAATGGCGGCTTCATTGCCATGAGCTTTGGCCGCGA
GGATGTGGACCGACATTCGGTTGTGTACAAAAAGGAACACGCTCCTGGCG
AGGATGAGGTCACGGCCCGTCGGAACGGAGACGGTTGGAACGAGGAGATA
GCCAAGGAGTACGCGGAGCGACGGCGGGAACGATTGGCGCAGGAGCAAAG
TGACAAAGAAGCCTCCACATCCGAAGCAGCAAGTTCAGGCTCGTCCACAT
CCACATCAGCGGATCAGGACTCCGGCGAAGTTAAGCCCACGACCAACTAC
AAGGCCAAGTATGCCCACCTCATCGGAGAGTCGGCCGCACTGCAGGCGGC
CCGTAAGACGGAGACCAACCAAAGCTACGGATTCGTGCCTAGCAAGAATA
AGAAGGATGTGCGCTCCATCGAACAAACTTTGGCCGACATCCAGGCCAAA
AAGCGTCTGCGATTGGCTCAGCAGCAGGAGCTGGAGCAAGAGCAGCAAGC
GCAAGAGGCAACCACATCCACAGAGGACCCAGCAAGCTTTCTAGACCAT
BO04637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 768 | CG2608-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-RA | 1477 | CG2608-RA | 191..955 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20646095..20646859 | 17..781 | 3825 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6873 | 719..784 | 120 | 66.7 | Plus |
BO04637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:59 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 1..768 | 17..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:29 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 189..953 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:50 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:59 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 189..953 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:39 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2608-RA | 191..955 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:39 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20646095..20646859 | 17..783 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:50 Download gff for
BO04637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20646095..20646859 | 17..783 | 99 | | Plus |
BO04637.pep Sequence
Translation from 16 to 799
> BO04637.pep
MDLLDSILNAMDAPPANNEQQKTLIKKQREMLERMQNKQKEELLRFRKYV
DERMGRFAKDDRRCIEFQPLDKVHRSVIHEVAENGGFIAMSFGREDVDRH
SVVYKKEHAPGEDEVTARRNGDGWNEEIAKEYAERRRERLAQEQSDKEAS
TSEAASSGSSTSTSADQDSGEVKPTTNYKAKYAHLIGESAALQAARKTET
NQSYGFVPSKNKKDVRSIEQTLADIQAKKRLRLAQQQELEQEQQAQEATT
STEDPASFLDH
BO04637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2608-PA | 255 | CG2608-PA | 1..255 | 1..255 | 1290 | 100 | Plus |