Clone Sequence Records
BO04640.3prime Sequence
933 bp (757 high quality bases) assembled on 2005-12-01
> BO04640.3prime
ATGGTCTAGAAAGCTTGCGGTGATTGGGTTTCGGATTTGGGGTTTGTGGA
TCACGCTGAACTGCAGAATCCACACTACTCGGCATCCAGCGAGAAGCAAG
GCAGTCCGGCCAGCGCCGGATGTGTGGATTGCTGGGAGGAGCGGTGTCGC
TGCGGCATTGGCTGACCATTCTCGCGGTACGTCTTCAGTTTCGTCTCCAT
CGCTCTTAAGCGAATGCTGCTGGTTATATTCGTTTCTATTAACTAAACTG
CCATTGAGGGCGTTGACGCTGACGCTGGTGGCTCTTGTGGCGACAGCATT
GTCGTGTTTTACCAATTCGCCATTGGCAACAATACCATTTGGCAGCGAGG
CGGACGAGTTCATCGAGCTGTTGACCGTATTTGTGTCGTTTGCCGTGGGA
ACGCTCGTTCCATTGACCACTGGGGTAAAGCGTGACTTGACGTTCAGCTC
TTGTTTGAGATCTCTCGTCTCATCCATTAATCGCTGTAGTTTTTCCTGCA
GCAATCCCTTTTCATCCACTTCCAGCTCCAGAAGGGCGTTCTTCTCGTAG
GCCTGATCCAGCATCTTCTCGAAATTCTCTATGCTTTCGTTAAGTATGCG
ATGGGCACGTTCCAAATCGTCGTTTTTCTGCTCCAGCTGCCGCAGGTACA
CCTTCATGGTGTCGCGATCCTTCTTCACCGTTTCCAGCTGTTTCTCCATG
TTTGACATATCGATGCCATGCGATTCCAACTTGAGCTTGAGAGACTCGTT
TTCCCGCTCAAACATTGTGAGTTTGGCTGTGAGATCTTTGATTATACTCT
GCTTCTGGTCCAGAGTGGCGTCCATTTCTATTTCCATTTCGCGGGACTGC
TCCACAAACTCGTCGTACTCCTGTTTCACGTCTGTCCACTCTTTGTGGTA
CTGCTTAGATCGTTCCTTNCAATATCTGCACTC
BO04640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8104-PA | 954 | nudE-RA | 37..951 | 933..19 | 4556 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudE-RA | 1975 | CG8104-RA | 431..1345 | 933..19 | 4564 | 99.9 | Minus |
nudE-RD | 1246 | CG8104-RD | 431..1161 | 933..203 | 3644 | 99.9 | Minus |
nudE-RF | 2133 | CG8104-RF | 431..1160 | 933..204 | 3639 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9900421..9900696 | 737..462 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 9900759..9901019 | 463..203 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 9902151..9902335 | 203..19 | 925 | 100 | Minus |
3L | 28110227 | 3L | 9900153..9900306 | 889..736 | 770 | 100 | Minus |
3L | 28110227 | 3L | 9900041..9900086 | 933..888 | 219 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:19:50 has no hits.
BO04640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:31 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-PA | 37..954 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:34 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8104-PA | 37..954 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:26 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 431..1345 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:06 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 431..1345 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:06 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9900041..9900084 | 890..933 | 97 | -> | Minus |
3L | 9900153..9900306 | 736..889 | 100 | -> | Minus |
3L | 9900423..9900696 | 462..735 | 100 | -> | Minus |
3L | 9900761..9901018 | 204..461 | 100 | -> | Minus |
3L | 9902151..9902335 | 19..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:26 Download gff for
BO04640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9893253..9893406 | 736..889 | 100 | -> | Minus |
arm_3L | 9893141..9893184 | 890..933 | 97 | -> | Minus |
arm_3L | 9893523..9893796 | 462..735 | 100 | -> | Minus |
arm_3L | 9893861..9894118 | 204..461 | 100 | -> | Minus |
arm_3L | 9895251..9895435 | 19..203 | 100 | | Minus |
BO04640.5prime Sequence
937 bp (847 high quality bases) assembled on 2005-11-29
> BO04640.5prime
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCCAGCATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATC
BO04640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8104-PA | 954 | nudE-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
CG8104-PA | 954 | nudE-RA | 841..921 | 857..937 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudE-RA | 1975 | CG8104-RA | 395..1315 | 17..937 | 4560 | 99.8 | Plus |
nudE-RD | 1246 | CG8104-RD | 395..1161 | 17..783 | 3835 | 100 | Plus |
nudE-RF | 2133 | CG8104-RF | 395..1160 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9900421..9900696 | 249..524 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 9900759..9901019 | 523..783 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 9900153..9900306 | 97..250 | 770 | 100 | Plus |
3L | 28110227 | 3L | 9902151..9902305 | 783..937 | 715 | 97.4 | Plus |
3L | 28110227 | 3L | 9900005..9900086 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:19:57 has no hits.
BO04640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:32 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:36 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8104-PA | 1..921 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:28 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 392..1315 | 14..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:33 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 392..1315 | 14..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:33 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9900002..9900084 | 14..96 | 98 | -> | Plus |
3L | 9900153..9900306 | 97..250 | 100 | -> | Plus |
3L | 9900423..9900696 | 251..524 | 100 | -> | Plus |
3L | 9900761..9901018 | 525..782 | 100 | -> | Plus |
3L | 9902151..9902305 | 783..937 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:28 Download gff for
BO04640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9893102..9893184 | 14..96 | 98 | -> | Plus |
arm_3L | 9893253..9893406 | 97..250 | 100 | -> | Plus |
arm_3L | 9893523..9893796 | 251..524 | 100 | -> | Plus |
arm_3L | 9893861..9894118 | 525..782 | 100 | -> | Plus |
arm_3L | 9895251..9895405 | 783..937 | 98 | | Plus |
BO04640.complete Sequence
985 bp (985 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629822
> BO04640.complete
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATCCACAAACCCCAAA
TCCGAAACCCAATCACCGCAAGCTTTCTAGACCAT
BO04640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudE-RA | 954 | CG8104-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
nudE-RD | 852 | CG8104-PD | 1..767 | 17..783 | 3835 | 100 | Plus |
nudE-RF | 987 | CG8104-PF | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudE-RA | 1975 | CG8104-RA | 395..1345 | 17..967 | 4755 | 100 | Plus |
nudE-RD | 1246 | CG8104-RD | 395..1161 | 17..783 | 3835 | 100 | Plus |
nudE-RF | 2133 | CG8104-RF | 395..1160 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9900421..9900696 | 249..524 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 9900759..9901019 | 523..783 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 9902151..9902335 | 783..967 | 925 | 100 | Plus |
3L | 28110227 | 3L | 9900153..9900306 | 97..250 | 770 | 100 | Plus |
3L | 28110227 | 3L | 9900005..9900086 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:04 has no hits.
BO04640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:27 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 1..954 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:17 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 404..1357 | 14..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:31 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 395..1345 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:27 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 404..1357 | 14..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:01 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nudE-RA | 395..1345 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:01 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9900423..9900696 | 251..524 | 100 | -> | Plus |
3L | 9900761..9901018 | 525..782 | 100 | -> | Plus |
3L | 9902151..9902335 | 783..969 | 98 | | Plus |
3L | 9900005..9900084 | 17..96 | 100 | -> | Plus |
3L | 9900153..9900306 | 97..250 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:31 Download gff for
BO04640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9893105..9893184 | 17..96 | 100 | -> | Plus |
arm_3L | 9893253..9893406 | 97..250 | 100 | -> | Plus |
arm_3L | 9893523..9893796 | 251..524 | 100 | -> | Plus |
arm_3L | 9893861..9894118 | 525..782 | 100 | -> | Plus |
arm_3L | 9895251..9895435 | 783..969 | 98 | | Plus |
BO04640.pep Sequence
Translation from 16 to 985
> BO04640.pep
MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD
ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK
DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE
VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN
SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ
QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW
ILQFSVIHKPQIRNPITASFLDH
BO04640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nudE-PA | 317 | CG8104-PA | 1..317 | 1..317 | 1620 | 100 | Plus |
nudE-PD | 283 | CG8104-PD | 1..256 | 1..256 | 1299 | 100 | Plus |
nudE-PF | 328 | CG8104-PF | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PE | 328 | CG8104-PE | 1..256 | 1..256 | 1296 | 99.6 | Plus |
nudE-PB | 328 | CG8104-PB | 1..256 | 1..256 | 1296 | 99.6 | Plus |