Clone BO04640 Report

Search the DGRC for BO04640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptnudE-RA
Protein status:BO04640.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO04640.3prime Sequence

933 bp (757 high quality bases) assembled on 2005-12-01

> BO04640.3prime
ATGGTCTAGAAAGCTTGCGGTGATTGGGTTTCGGATTTGGGGTTTGTGGA
TCACGCTGAACTGCAGAATCCACACTACTCGGCATCCAGCGAGAAGCAAG
GCAGTCCGGCCAGCGCCGGATGTGTGGATTGCTGGGAGGAGCGGTGTCGC
TGCGGCATTGGCTGACCATTCTCGCGGTACGTCTTCAGTTTCGTCTCCAT
CGCTCTTAAGCGAATGCTGCTGGTTATATTCGTTTCTATTAACTAAACTG
CCATTGAGGGCGTTGACGCTGACGCTGGTGGCTCTTGTGGCGACAGCATT
GTCGTGTTTTACCAATTCGCCATTGGCAACAATACCATTTGGCAGCGAGG
CGGACGAGTTCATCGAGCTGTTGACCGTATTTGTGTCGTTTGCCGTGGGA
ACGCTCGTTCCATTGACCACTGGGGTAAAGCGTGACTTGACGTTCAGCTC
TTGTTTGAGATCTCTCGTCTCATCCATTAATCGCTGTAGTTTTTCCTGCA
GCAATCCCTTTTCATCCACTTCCAGCTCCAGAAGGGCGTTCTTCTCGTAG
GCCTGATCCAGCATCTTCTCGAAATTCTCTATGCTTTCGTTAAGTATGCG
ATGGGCACGTTCCAAATCGTCGTTTTTCTGCTCCAGCTGCCGCAGGTACA
CCTTCATGGTGTCGCGATCCTTCTTCACCGTTTCCAGCTGTTTCTCCATG
TTTGACATATCGATGCCATGCGATTCCAACTTGAGCTTGAGAGACTCGTT
TTCCCGCTCAAACATTGTGAGTTTGGCTGTGAGATCTTTGATTATACTCT
GCTTCTGGTCCAGAGTGGCGTCCATTTCTATTTCCATTTCGCGGGACTGC
TCCACAAACTCGTCGTACTCCTGTTTCACGTCTGTCCACTCTTTGTGGTA
CTGCTTAGATCGTTCCTTNCAATATCTGCACTC

BO04640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8104-PA 954 nudE-RA 37..951 933..19 4556 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-RA 1975 CG8104-RA 431..1345 933..19 4564 99.9 Minus
nudE-RD 1246 CG8104-RD 431..1161 933..203 3644 99.9 Minus
nudE-RF 2133 CG8104-RF 431..1160 933..204 3639 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9900421..9900696 737..462 1380 100 Minus
3L 28110227 3L 9900759..9901019 463..203 1305 100 Minus
3L 28110227 3L 9902151..9902335 203..19 925 100 Minus
3L 28110227 3L 9900153..9900306 889..736 770 100 Minus
3L 28110227 3L 9900041..9900086 933..888 219 97.8 Minus
Blast to na_te.dros performed on 2015-02-13 15:19:50 has no hits.

BO04640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:31 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
nudE-PA 37..954 18..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:34 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8104-PA 37..954 18..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:26 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 431..1345 19..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:06 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 431..1345 19..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:06 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9900041..9900084 890..933 97 -> Minus
3L 9900153..9900306 736..889 100 -> Minus
3L 9900423..9900696 462..735 100 -> Minus
3L 9900761..9901018 204..461 100 -> Minus
3L 9902151..9902335 19..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:26 Download gff for BO04640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9893253..9893406 736..889 100 -> Minus
arm_3L 9893141..9893184 890..933 97 -> Minus
arm_3L 9893523..9893796 462..735 100 -> Minus
arm_3L 9893861..9894118 204..461 100 -> Minus
arm_3L 9895251..9895435 19..203 100   Minus

BO04640.5prime Sequence

937 bp (847 high quality bases) assembled on 2005-11-29

> BO04640.5prime
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCCAGCATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATC

BO04640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8104-PA 954 nudE-RA 1..836 17..852 4180 100 Plus
CG8104-PA 954 nudE-RA 841..921 857..937 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-RA 1975 CG8104-RA 395..1315 17..937 4560 99.8 Plus
nudE-RD 1246 CG8104-RD 395..1161 17..783 3835 100 Plus
nudE-RF 2133 CG8104-RF 395..1160 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9900421..9900696 249..524 1380 100 Plus
3L 28110227 3L 9900759..9901019 523..783 1305 100 Plus
3L 28110227 3L 9900153..9900306 97..250 770 100 Plus
3L 28110227 3L 9902151..9902305 783..937 715 97.4 Plus
3L 28110227 3L 9900005..9900086 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:19:57 has no hits.

BO04640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:32 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
nudE-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:36 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8104-PA 1..921 17..937 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:28 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 392..1315 14..937 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:59:33 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 392..1315 14..937 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:59:33 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9900002..9900084 14..96 98 -> Plus
3L 9900153..9900306 97..250 100 -> Plus
3L 9900423..9900696 251..524 100 -> Plus
3L 9900761..9901018 525..782 100 -> Plus
3L 9902151..9902305 783..937 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:28 Download gff for BO04640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9893102..9893184 14..96 98 -> Plus
arm_3L 9893253..9893406 97..250 100 -> Plus
arm_3L 9893523..9893796 251..524 100 -> Plus
arm_3L 9893861..9894118 525..782 100 -> Plus
arm_3L 9895251..9895405 783..937 98   Plus

BO04640.complete Sequence

985 bp (985 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629822

> BO04640.complete
GAAGTTATCAGTCGACATGGAGTCGCCCCCGATGTTCAATAGTGTGGAAG
ATGAGTGCAGATATTGGAAGGAACGATCTAAGCAGTACCACAAAGAGTGG
ACAGACGTGAAACAGGAGTACGACGAGTTTGTGGAGCAGTCCCGCGAAAT
GGAAATAGAAATGGACGCCACTCTGGACCAGAAGCAGAGTATAATCAAAG
ATCTCACAGCCAAACTCACAATGTTTGAGCGGGAAAACGAGTCTCTCAAG
CTCAAGTTGGAATCGCATGGCATCGATATGTCAAACATGGAGAAACAGCT
GGAAACGGTGAAGAAGGATCGCGACACCATGAAGGTGTACCTGCGGCAGC
TGGAGCAGAAAAACGACGATTTGGAACGTGCCCATCGCATACTTAACGAA
AGCATAGAGAATTTCGAGAAGATGCTGGATCAGGCCTACGAGAAGAACGC
CCTTCTGGAGCTGGAAGTGGATGAAAAGGGATTGCTGCAGGAAAAACTAC
AGCGATTAATGGATGAGACGAGAGATCTCAAACAAGAGCTGAACGTCAAG
TCACGCTTTACCCCAGTGGTCAATGGAACGAGCGTTCCCACGGCAAACGA
CACAAATACGGTCAACAGCTCGATGAACTCGTCCGCCTCGCTGCCAAATG
GTATTGTTGCCAATGGCGAATTGGTAAAACACGACAATGCTGTCGCCACA
AGAGCCACCAGCGTCAGCGTCAACGCCCTCAATGGCAGTTTAGTTAATAG
AAACGAATATAACCAGCAGCATTCGCTTAAGAGCGATGGAGACGAAACTG
AAGACGTACCGCGAGAATGGTCAGCCAATGCCGCAGCGACACCGCTCCTC
CCAGCAATCCACACATCCGGCGCTGGCCGGACTGCCTTGCTTCTCGCTGG
ATGCCGAGTAGTGTGGATTCTGCAGTTCAGCGTGATCCACAAACCCCAAA
TCCGAAACCCAATCACCGCAAGCTTTCTAGACCAT

BO04640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-RA 954 CG8104-PA 1..951 17..967 4755 100 Plus
nudE-RD 852 CG8104-PD 1..767 17..783 3835 100 Plus
nudE-RF 987 CG8104-PF 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-RA 1975 CG8104-RA 395..1345 17..967 4755 100 Plus
nudE-RD 1246 CG8104-RD 395..1161 17..783 3835 100 Plus
nudE-RF 2133 CG8104-RF 395..1160 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9900421..9900696 249..524 1380 100 Plus
3L 28110227 3L 9900759..9901019 523..783 1305 100 Plus
3L 28110227 3L 9902151..9902335 783..967 925 100 Plus
3L 28110227 3L 9900153..9900306 97..250 770 100 Plus
3L 28110227 3L 9900005..9900086 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:04 has no hits.

BO04640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:27 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 1..954 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:17 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 404..1357 14..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:31 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 395..1345 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:27 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 404..1357 14..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:01 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
nudE-RA 395..1345 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:01 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9900423..9900696 251..524 100 -> Plus
3L 9900761..9901018 525..782 100 -> Plus
3L 9902151..9902335 783..969 98   Plus
3L 9900005..9900084 17..96 100 -> Plus
3L 9900153..9900306 97..250 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:31 Download gff for BO04640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9893105..9893184 17..96 100 -> Plus
arm_3L 9893253..9893406 97..250 100 -> Plus
arm_3L 9893523..9893796 251..524 100 -> Plus
arm_3L 9893861..9894118 525..782 100 -> Plus
arm_3L 9895251..9895435 783..969 98   Plus

BO04640.pep Sequence

Translation from 16 to 985

> BO04640.pep
MESPPMFNSVEDECRYWKERSKQYHKEWTDVKQEYDEFVEQSREMEIEMD
ATLDQKQSIIKDLTAKLTMFERENESLKLKLESHGIDMSNMEKQLETVKK
DRDTMKVYLRQLEQKNDDLERAHRILNESIENFEKMLDQAYEKNALLELE
VDEKGLLQEKLQRLMDETRDLKQELNVKSRFTPVVNGTSVPTANDTNTVN
SSMNSSASLPNGIVANGELVKHDNAVATRATSVSVNALNGSLVNRNEYNQ
QHSLKSDGDETEDVPREWSANAAATPLLPAIHTSGAGRTALLLAGCRVVW
ILQFSVIHKPQIRNPITASFLDH

BO04640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
nudE-PA 317 CG8104-PA 1..317 1..317 1620 100 Plus
nudE-PD 283 CG8104-PD 1..256 1..256 1299 100 Plus
nudE-PF 328 CG8104-PF 1..256 1..256 1296 99.6 Plus
nudE-PE 328 CG8104-PE 1..256 1..256 1296 99.6 Plus
nudE-PB 328 CG8104-PB 1..256 1..256 1296 99.6 Plus