Clone BO04641 Report

Search the DGRC for BO04641

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptSep2-RA
Protein status:BO04641.pep: Imported from assembly
Sequenced Size:1291

Clone Sequence Records

BO04641.5prime Sequence

361 bp (348 high quality bases) assembled on 2005-12-01

> BO04641.5prime
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCG

BO04641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4173-PA 1260 Sep2-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1562 CG4173-RA 86..430 17..361 1725 100 Plus
Sep2-RB 1688 CG4173-RB 358..556 163..361 995 100 Plus
Sep2-RB 1688 CG4173-RB 86..234 17..165 745 100 Plus
Sep5-RB 1729 CG2916-RB 284..548 79..343 440 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20587261..20587459 361..163 995 100 Minus
3R 32079331 3R 20588123..20588271 165..17 745 100 Minus
2R 25286936 2R 7961314..7961578 343..79 440 77.7 Minus
Blast to na_te.dros performed on 2015-02-12 14:07:30 has no hits.

BO04641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:34 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:40 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4173-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:02 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..430 17..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:20 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..430 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:20 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20587261..20587457 165..361 100 <- Minus
3R 20588124..20588271 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:02 Download gff for BO04641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412983..16413179 165..361 100 <- Minus
arm_3R 16413846..16413993 17..164 100   Minus

BO04641.3prime Sequence

432 bp (388 high quality bases) assembled on 2005-12-01

> BO04641.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTGCTCTTGCCGAGGGTGAGCGTGT
GGTGGGCGGTGGCCAACTGCTGCTTGCGCCGCTGGAAGTCAAGGTAGTCC
TCCTCGAGCGCCTTGCGCGACTCTTCCAGCTTGCGCTTCTCCTCGGCGTG
ATCCCGCTTTAGCTTCTCGAACTTGGCGTGCAGGTCCTTCTCGCTCTCCT
TCAGCTCGGCCTCCTTCTCCTTAACGCGCTGCACGAACATCTGACGAACC
TCCTCCTCCTTGGACTGCAGCTCGGCCAAATGGTTGGAGCGCTTTGCCTC
GAACGTCTGCTGGAACGAGATGGGCTTGTTGTCGCTGTCCACATCGCTGA
AGCCCATTTGCTCCAGCCTCTTCTGGCGATACAGCTCGTAGTGGCGCGTG
TGTGTCTTTTCGCGCATATCCTCCATGTTGGT

BO04641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4173-PA 1260 Sep2-RA 844..1257 432..19 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RB 1688 CG4173-RB 1055..1468 432..19 2070 100 Minus
Sep2-RA 1562 CG4173-RA 929..1342 432..19 2070 100 Minus
Sep5-RB 1729 CG2916-RB 1068..1376 429..121 510 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20586349..20586762 19..432 2070 100 Plus
2R 25286936 2R 7960486..7960794 121..429 510 77.7 Plus
Blast to na_te.dros performed on 2015-02-13 05:37:47 has no hits.

BO04641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:33 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-PA 844..1260 18..432 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:38 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4173-PA 844..1260 18..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:40 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 929..1342 19..432 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:31 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 929..1342 19..432 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:31 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20586349..20586762 19..432 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:40 Download gff for BO04641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412071..16412484 19..432 100   Plus

BO04641.complete Sequence

1291 bp assembled on 2010-02-24

GenBank Submission: KX796156

> BO04641.complete
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTCGAG
AACTATCTGCAGGAGGAGCTGAAGATCAAGCGATCGCTGGTGACATGCCA
CGACAGCCGCATCCACATCTGCCTCTACTTTATTTGCCCCACTGGGCACG
GCCTCAAATCGCTGGACCTGGTGTGCATGAAGAAGCTGGACAGCAAGGTG
AACATAATTCCGGTGATTGCCAAGGCGGATACCATTTCCAAGGTTGAGCT
ACAGCGCTTCAAGGCGAAGATCATTCAGGAGCTAAACGCCAATGGAGTGC
ACATCTACCAGTTCCCCACCGACGATGAGACGGTGGCCGAGACCAACACC
AGCATGAACTCGCACATTCCCTTCGCCGTGGTGGGCAGCACGGAGTTTAT
TAAGGTGGGCAACAAGCTCATCCGCGCTCGCCAGTACCCCTGGGGCACGG
TGCAGGTGGAGAACGAGACGCACTGCGACTTTGTGAAGCTGCGCGAGATG
CTCATTCGCACCAACATGGAGGATATGCGCGAAAAGACACACACGCGCCA
CTACGAGCTGTATCGCCAGAAGAGGCTGGAGCAAATGGGCTTCAGCGATG
TGGACAGCGACAACAAGCCCATCTCGTTCCAGCAGACGTTCGAGGCAAAG
CGCTCCAACCATTTGGCCGAGCTGCAGTCCAAGGAGGAGGAGGTTCGTCA
GATGTTCGTGCAGCGCGTTAAGGAGAAGGAGGCCGAGCTGAAGGAGAGCG
AGAAGGACCTGCACGCCAAGTTCGAGAAGCTAAAGCGGGATCACGCCGAG
GAGAAGCGCAAGCTGGAAGAGTCGCGCAAGGCGCTCGAGGAGGACTACCT
TGACTTCCAGCGGCGCAAGCAGCAGTTGGCCACCGCCCACCACACGCTCA
CCCTCGGCAAGAGCAAGAAGAAGGCAAGCTTTCTAGACCAT

BO04641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1260 CG4173-PA 1..1257 17..1273 6285 100 Plus
Sep2-RB 1083 CG4173-PB 1..1080 194..1273 5400 100 Plus
Sep5-RB 1269 CG2916-PB 72..1164 79..1171 1295 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1562 CG4173-RA 86..1342 17..1273 6285 100 Plus
Sep2-RB 1688 CG4173-RB 358..1468 163..1273 5555 100 Plus
Sep5-RB 1729 CG2916-RB 284..1376 79..1171 1295 74.6 Plus
Sep2-RB 1688 CG4173-RB 86..234 17..165 745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20586349..20587459 1273..163 5555 100 Minus
2R 25286936 2R 7960486..7961578 1171..79 1295 74.6 Minus
3R 32079331 3R 20588123..20588271 165..17 745 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:27:28 has no hits.

BO04641.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:38 Download gff for BO04641.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 93..1349 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:41 Download gff for BO04641.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..1342 17..1275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:12 Download gff for BO04641.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..1342 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:12 Download gff for BO04641.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20586347..20587457 165..1275 99 <- Minus
3R 20588124..20588271 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:41 Download gff for BO04641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412069..16413179 165..1275 99 <- Minus
arm_3R 16413846..16413993 17..164 100   Minus

BO04641.pep Sequence

Translation from 16 to 1291

> BO04641.pep
MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG
ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI
CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH
ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA
KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK
LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR
QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR
VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR
KQQLATAHHTLTLGKSKKKASFLDH

BO04641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-PA 419 CG4173-PA 1..419 1..419 2165 100 Plus
Sep2-PB 360 CG4173-PB 1..360 60..419 1862 100 Plus
Sep5-PB 422 CG2916-PB 19..422 16..419 1651 74.5 Plus
Sep5-PA 422 CG2916-PA 19..422 16..419 1651 74.5 Plus
pnut-PA 539 CG8705-PA 112..517 13..420 783 38.4 Plus