Clone Sequence Records
BO04645.3prime Sequence
946 bp (740 high quality bases) assembled on 2005-12-01
> BO04645.3prime
ATGGTCTAGAAAGCTTGCAGTGGACCACAGATAGAAGTAAGTGCTTTGCC
ACGTGGGAATGTAATCTTTAAGGGGTTTGGCAACCACCTTAGCAATGGGC
ACACTTGTGGCCACAAAGTCGAGGATCCGCTCCAGTCTGGATTTGGTGAA
GCTGTCATAGAACGGCGATCGGACCAGGAAGTACATGATGTTTATGCATC
GCCTGCTCAGCTCCAGTTTTTGTTGCTTGGACATTAGGTCGCGATGCTGG
CGGTAGAGGTGAATGCTATACAAATCAATGGATAATGCTACCATATATTG
CTTCCAACTTCTCCGGCCGAACAGCCCCATGGCGACCAGGTGGATTAGTG
GCTTCGATATATACAGGTATTCTGCTTGCAGGAGTTTCCTCGGAATTTGC
GTCTTCGCCGCTTCATTGTTGTCTATATGAAGCTTGAAGTCGCGGTATTG
CAGGGGAGGAGCACCCTCCACTTTACGAATCACACGGCCAGATCGCTTCA
ATTGGAAGGTAATGGAGTGCTGGGACTGCAATAAATCGTTCGTGGAGGAG
GCCACACCATCCCCCGAATTCTTCCTCTGTTTGGCCCTTCGATTCAGTGC
GGCGATGGGCGGTGAGGTGATTATATCCGAGGTTGAGTGTTTCAAGATAA
AGAAACGGCCCGCTGCCTTGAAGGCCTGTATTAGCGCTATCACCAGCCAC
TTGCCGGATTGACCGAAAAGCCGACGGGCTGATATCTCGATGAAAACCTC
GCTATATTCGAGCGTCGTCAACGTGACCTTTAGACGGTAGCAAAGTTTCG
ATTGCAGGTGGATCACCGAATTCTCCTCGGAATTGCGTGCCTTTTCGATG
ATCCGGTCGTTGTAGAACACCAGCATGTTTGACAGTGTATATACCAGCTC
ACTGACCACATTTGATGAGGAAATGCGACCTGCTATAAAGTAGGAT
BO04645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3947-PA | 1026 | CG3947-RA | 96..1023 | 946..19 | 4640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 206..1133 | 946..19 | 4640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777072..20777985 | 19..932 | 4570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:45:00 has no hits.
BO04645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:35 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 96..1026 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:41 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 96..1026 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:42 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 206..1143 | 9..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:46 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 206..1143 | 9..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:46 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777062..20777982 | 9..929 | 99 | <- | Plus |
| 3L | 20778043..20778059 | 930..946 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:42 Download gff for
BO04645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770162..20771082 | 9..929 | 99 | <- | Plus |
| arm_3L | 20771143..20771159 | 930..946 | 100 | | Plus |
BO04645.5prime Sequence
880 bp (826 high quality bases) assembled on 2005-12-01
> BO04645.5prime
GAAGTTATCAGTCGACATGGACACTCTGAAGGGCATGCTGAAGGCGTACG
AGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGAGACCACA
GCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCATCAAATGT
GGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTTCTACAACG
ACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGTGATCCAC
CTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACGACGCTCGA
ATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTCGGTCAAT
CCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGCAGCGGGC
CGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACCTCACCGCC
CATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTCGGGGGATG
GTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACTCCATTACC
TTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGGGTGCTCC
TCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAATGAAGCGG
CGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACCTGTATATA
TCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCCGGAGAAG
TTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAGCATTCACC
TCTACCGCCAGCATCGCGACCTAATGTCCAAGCAACAAAAACTGGAGCTG
AGCAGGCGATGCATAAACATCATGTACTTC
BO04645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3947-PA | 1026 | CG3947-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 111..974 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777231..20777985 | 880..126 | 3775 | 100 | Minus |
| 3L | 28110227 | 3L | 20778041..20778154 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:10:21 has no hits.
BO04645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:36 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:43 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:00 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..974 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:02 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..974 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:02 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777231..20777982 | 129..880 | 100 | <- | Minus |
| 3L | 20778043..20778154 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:00 Download gff for
BO04645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770331..20771082 | 129..880 | 100 | <- | Minus |
| arm_3L | 20771143..20771254 | 17..128 | 100 | | Minus |
BO04645.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629823
> BO04645.complete
GAAGTTATCAGTCGACATGGACACTCTGAAGGGCATGCTGAAGGCGTACG
AGGCGTGGGTGGGCAAAAACCCCGACGTGGTGGGGGATTTTGAGACCACA
GCCAAGTGGGTATCCTACTTTATAGCAGGTCGCATTTCCTCATCAAATGT
GGTCAGTGAGCTGGTATATACACTGTCAAACATGCTGGTGTTCTACAACG
ACCGGATCATCGAAAAGGCACGCAATTCCGAGGAGAATTCGGTGATCCAC
CTGCAATCGAAACTTTGCTACCGTCTAAAGGTCACGTTGACGACGCTCGA
ATATAGCGAGGTTTTCATCGAGATATCAGCCCGTCGGCTTTTCGGTCAAT
CCGGCAAGTGGCTGGTGATAGCGCTAATACAGGCCTTCAAGGCAGCGGGC
CGTTTCTTTATCTTGAAACACTCAACCTCGGATATAATCACCTCACCGCC
CATCGCCGCACTGAATCGAAGGGCCAAACAGAGGAAGAATTCGGGGGATG
GTGTGGCCTCCTCCACGAACGATTTATTGCAGTCCCAGCACTCCATTACC
TTCCAATTGAAGCGATCTGGCCGTGTGATTCGTAAAGTGGAGGGTGCTCC
TCCCCTGCAATACCGCGACTTCAAGCTTCATATAGACAACAATGAAGCGG
CGAAGACGCAAATTCCGAGGAAACTCCTGCAAGCAGAATACCTGTATATA
TCGAAGCCACTAATCCACCTGGTCGCCATGGGGCTGTTCGGCCGGAGAAG
TTGGAAGCAATATATGGTAGCATTATCCATTGATTTGTATAGCATTCACC
TCTACCGCCAGCATCGCGACCTAATGTCCAAGCAACAAAAACTGGAGCTG
AGCAGGCGATGCATAAACATCATGTACTTCCTGGTCCGATCGCCGTTCTA
TGACAGCTTCACCAAATCCAGACTGGAGCGGATCCTCGACTTTGTGGCCA
CAAGTGTGCCCATTGCTAAGGTGGTTGCCAAACCCCTTAAAGATTACATT
CCCACGTGGCAAAGCACTTACTTCTATCTGTGGTCCACTGCAAGCTTTCT
AGACCAT
BO04645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1026 | CG3947-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-RA | 1439 | CG3947-RA | 111..1133 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20777072..20777985 | 1039..126 | 4570 | 100 | Minus |
| 3L | 28110227 | 3L | 20778041..20778154 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:41:52 has no hits.
BO04645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:04 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 1..1026 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:26 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 87..1119 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:15 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1133 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:04 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3947-RA | 87..1119 | 17..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:53 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex16-RA | 111..1133 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:53 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20777070..20777982 | 129..1041 | 99 | <- | Minus |
| 3L | 20778043..20778154 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:15 Download gff for
BO04645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20770170..20771082 | 129..1041 | 99 | <- | Minus |
| arm_3L | 20771143..20771254 | 17..128 | 100 | | Minus |
BO04645.pep Sequence
Translation from 16 to 1057
> BO04645.pep
MDTLKGMLKAYEAWVGKNPDVVGDFETTAKWVSYFIAGRISSSNVVSELV
YTLSNMLVFYNDRIIEKARNSEENSVIHLQSKLCYRLKVTLTTLEYSEVF
IEISARRLFGQSGKWLVIALIQAFKAAGRFFILKHSTSDIITSPPIAALN
RRAKQRKNSGDGVASSTNDLLQSQHSITFQLKRSGRVIRKVEGAPPLQYR
DFKLHIDNNEAAKTQIPRKLLQAEYLYISKPLIHLVAMGLFGRRSWKQYM
VALSIDLYSIHLYRQHRDLMSKQQKLELSRRCINIMYFLVRSPFYDSFTK
SRLERILDFVATSVPIAKVVAKPLKDYIPTWQSTYFYLWSTASFLDH
BO04645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex16-PA | 341 | CG3947-PA | 1..341 | 1..341 | 1740 | 100 | Plus |
