Clone Sequence Records
BO04646.5prime Sequence
533 bp (532 high quality bases) assembled on 2005-11-29
> BO04646.5prime
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTGCAAGCTTTCTAGACC
BO04646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PA | 504 | CG33229-RA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..903 | 12..517 | 2515 | 99.8 | Plus |
CG33229-RA | 1500 | CG33229-RA | 144..649 | 12..517 | 2515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224754 | 12..517 | 2515 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-13 05:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 392..492 | 213 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 334..496 | 203 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 392..503 | 191 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 321..492 | 181 | 58.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 384..482 | 172 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 392..492 | 161 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 315..483 | 158 | 61.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 305..480 | 145 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 386..480 | 136 | 64.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 398..475 | 129 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 338..434 | 125 | 58.8 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 483..397 | 119 | 65.6 | Minus |
BO04646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:38 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:46 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:43 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 137..654 | 1..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:43 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 137..654 | 1..525 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:43 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224242..224759 | 1..525 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:43 Download gff for
BO04646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224242..224759 | 1..525 | 98 | | Plus |
BO04646.3prime Sequence
533 bp (532 high quality bases) assembled on 2005-12-01
> BO04646.3prime
ATGGTCTAGAAAGCTTGCACTGGCCACGGCAATGGCGCAGCTGTGCTGCT
CATTGTTGCTGTTATTGTTATTGCTGGCGCCCGTGTAACTGTTGCTCCCA
TTGTTATTGTTGTTGCATGTGTCTTGGTTGCCATTGTTGCTGCTTAAGCT
ACGCATAAAACTGTCGAGGCTACTAAGCTCGCTGCTCCATAAATTGCTTT
CCGCCTCTGCTTCTGCGGCAGCCTTGGTGGTCGAGGTCGCCACTGCAGAG
TACGCGTCACTGGCGCAGTGCGTTCTGCCGTGGGGCACAAACCGTGTTTG
AATGTCCAGCCAGCGACTGAAGCGCTCCTGCTGCTTTCTACGCAGCTCGT
GCTCTGCGTGGAGCAGGGCCGTCGACAAAATGGCGTTCACGCGTAGGTCG
CTGCCAGCGCCTCTTAGCTTGCGACGCATTTTCTGGCGCTTAACGCGGAA
GTTACGGACCCAGTCGGTTAGGGTCTTGGGGTTCTCGGCTGCGTCGCACT
CGTCGTAGTACGCCACCATGTCGACTGATAACT
BO04646.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PA | 504 | CG33229-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..903 | 524..19 | 2515 | 99.8 | Minus |
CG33229-RA | 1500 | CG33229-RA | 144..649 | 524..19 | 2515 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224754 | 524..19 | 2515 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-12 01:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 144..44 | 213 | 70.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 202..40 | 203 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 144..33 | 191 | 68.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 215..44 | 181 | 58.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 152..54 | 172 | 68 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 144..44 | 161 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 221..53 | 158 | 61.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 231..56 | 145 | 57.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 150..56 | 136 | 64.6 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 138..61 | 129 | 62.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 198..102 | 125 | 58.8 | Minus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 53..139 | 119 | 65.6 | Plus |
BO04646.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:37 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:44 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:00 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 138..654 | 11..533 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:34 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 138..654 | 11..533 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:34 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224243..224759 | 11..533 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:00 Download gff for
BO04646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224243..224759 | 11..533 | 98 | | Minus |
BO04646.complete Sequence
535 bp (535 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629824
> BO04646.complete
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTGCAAGCTTTCTAGACCAT
BO04646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 504 | CG33229-PB | 1..501 | 17..517 | 2505 | 100 | Plus |
CG33229-RA | 504 | CG33229-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-RB | 1754 | CG33229-RB | 398..903 | 12..517 | 2515 | 99.8 | Plus |
CG33229-RA | 1500 | CG33229-RA | 144..649 | 12..517 | 2515 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 224249..224754 | 12..517 | 2515 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 14:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6837 | 392..492 | 213 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6824 | 334..496 | 203 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2419 | 392..503 | 191 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2512 | 321..492 | 181 | 58.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1063..1158 | 384..482 | 172 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6912 | 392..492 | 161 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6919 | 315..483 | 158 | 61.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1006..1179 | 305..480 | 145 | 57.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2550 | 386..480 | 136 | 64.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2685 | 398..475 | 129 | 62.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1158 | 338..434 | 125 | 58.8 | Plus |
accord2 | 7650 | accord2 QBERT 7650bp | 4407..4493 | 483..397 | 119 | 65.6 | Minus |
BO04646.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:02 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 1..504 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:54 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 112..629 | 1..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:13 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 149..649 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:02 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 112..629 | 1..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:43 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33229-RA | 149..649 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:43 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 224254..224754 | 17..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:13 Download gff for
BO04646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 224254..224754 | 17..519 | 99 | | Plus |
BO04646.pep Sequence
Translation from 16 to 535
> BO04646.pep
MVAYYDECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILST
ALLHAEHELRRKQQERFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKA
AAEAEAESNLWSSELSSLDSFMRSLSSNNGNQDTCNNNNNGSNSYTGASN
NNNSNNEQHSCAIAVASASFLDH
BO04646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33229-PB | 167 | CG33229-PB | 1..167 | 1..167 | 870 | 100 | Plus |
CG33229-PA | 167 | CG33229-PA | 1..167 | 1..167 | 870 | 100 | Plus |