Clone BO04646 Report

Search the DGRC for BO04646

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG33229-RA
Protein status:BO04646.pep: validated full length
Sequenced Size:535

Clone Sequence Records

BO04646.5prime Sequence

533 bp (532 high quality bases) assembled on 2005-11-29

> BO04646.5prime
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTGCAAGCTTTCTAGACC

BO04646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-PA 504 CG33229-RA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-RB 1754 CG33229-RB 398..903 12..517 2515 99.8 Plus
CG33229-RA 1500 CG33229-RA 144..649 12..517 2515 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 224249..224754 12..517 2515 99.8 Plus
Blast to na_te.dros performed 2015-02-13 05:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6837 392..492 213 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6661..6824 334..496 203 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2419 392..503 191 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2512 321..492 181 58.7 Plus
roo 9092 roo DM_ROO 9092bp 1063..1158 384..482 172 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6912 392..492 161 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6919 315..483 158 61.5 Plus
roo 9092 roo DM_ROO 9092bp 1006..1179 305..480 145 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2550 386..480 136 64.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2608..2685 398..475 129 62.8 Plus
roo 9092 roo DM_ROO 9092bp 1062..1158 338..434 125 58.8 Plus
accord2 7650 accord2 QBERT 7650bp 4407..4493 483..397 119 65.6 Minus

BO04646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:38 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-PA 1..504 17..518 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:46 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-PA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:43 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 137..654 1..525 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:43 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 137..654 1..525 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:43 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 224242..224759 1..525 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:43 Download gff for BO04646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 224242..224759 1..525 98   Plus

BO04646.3prime Sequence

533 bp (532 high quality bases) assembled on 2005-12-01

> BO04646.3prime
ATGGTCTAGAAAGCTTGCACTGGCCACGGCAATGGCGCAGCTGTGCTGCT
CATTGTTGCTGTTATTGTTATTGCTGGCGCCCGTGTAACTGTTGCTCCCA
TTGTTATTGTTGTTGCATGTGTCTTGGTTGCCATTGTTGCTGCTTAAGCT
ACGCATAAAACTGTCGAGGCTACTAAGCTCGCTGCTCCATAAATTGCTTT
CCGCCTCTGCTTCTGCGGCAGCCTTGGTGGTCGAGGTCGCCACTGCAGAG
TACGCGTCACTGGCGCAGTGCGTTCTGCCGTGGGGCACAAACCGTGTTTG
AATGTCCAGCCAGCGACTGAAGCGCTCCTGCTGCTTTCTACGCAGCTCGT
GCTCTGCGTGGAGCAGGGCCGTCGACAAAATGGCGTTCACGCGTAGGTCG
CTGCCAGCGCCTCTTAGCTTGCGACGCATTTTCTGGCGCTTAACGCGGAA
GTTACGGACCCAGTCGGTTAGGGTCTTGGGGTTCTCGGCTGCGTCGCACT
CGTCGTAGTACGCCACCATGTCGACTGATAACT

BO04646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-PA 504 CG33229-RA 1..501 519..19 2505 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-RB 1754 CG33229-RB 398..903 524..19 2515 99.8 Minus
CG33229-RA 1500 CG33229-RA 144..649 524..19 2515 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 224249..224754 524..19 2515 99.8 Minus
Blast to na_te.dros performed 2015-02-12 01:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6837 144..44 213 70.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6661..6824 202..40 203 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2419 144..33 191 68.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2512 215..44 181 58.7 Minus
roo 9092 roo DM_ROO 9092bp 1063..1158 152..54 172 68 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6912 144..44 161 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6919 221..53 158 61.5 Minus
roo 9092 roo DM_ROO 9092bp 1006..1179 231..56 145 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2550 150..56 136 64.6 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2608..2685 138..61 129 62.8 Minus
roo 9092 roo DM_ROO 9092bp 1062..1158 198..102 125 58.8 Minus
accord2 7650 accord2 QBERT 7650bp 4407..4493 53..139 119 65.6 Plus

BO04646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:37 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-PA 1..504 18..519 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:44 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-PA 1..504 18..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:00 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 138..654 11..533 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:34 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 138..654 11..533 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:34 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 224243..224759 11..533 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:00 Download gff for BO04646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 224243..224759 11..533 98   Minus

BO04646.complete Sequence

535 bp (535 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629824

> BO04646.complete
GAAGTTATCAGTCGACATGGTGGCGTACTACGACGAGTGCGACGCAGCCG
AGAACCCCAAGACCCTAACCGACTGGGTCCGTAACTTCCGCGTTAAGCGC
CAGAAAATGCGTCGCAAGCTAAGAGGCGCTGGCAGCGACCTACGCGTGAA
CGCCATTTTGTCGACGGCCCTGCTCCACGCAGAGCACGAGCTGCGTAGAA
AGCAGCAGGAGCGCTTCAGTCGCTGGCTGGACATTCAAACACGGTTTGTG
CCCCACGGCAGAACGCACTGCGCCAGTGACGCGTACTCTGCAGTGGCGAC
CTCGACCACCAAGGCTGCCGCAGAAGCAGAGGCGGAAAGCAATTTATGGA
GCAGCGAGCTTAGTAGCCTCGACAGTTTTATGCGTAGCTTAAGCAGCAAC
AATGGCAACCAAGACACATGCAACAACAATAACAATGGGAGCAACAGTTA
CACGGGCGCCAGCAATAACAATAACAGCAACAATGAGCAGCACAGCTGCG
CCATTGCCGTGGCCAGTGCAAGCTTTCTAGACCAT

BO04646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-RB 504 CG33229-PB 1..501 17..517 2505 100 Plus
CG33229-RA 504 CG33229-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-RB 1754 CG33229-RB 398..903 12..517 2515 99.8 Plus
CG33229-RA 1500 CG33229-RA 144..649 12..517 2515 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 224249..224754 12..517 2515 99.8 Plus
Blast to na_te.dros performed 2014-11-27 14:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6837 392..492 213 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6661..6824 334..496 203 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2419 392..503 191 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2512 321..492 181 58.7 Plus
roo 9092 roo DM_ROO 9092bp 1063..1158 384..482 172 68 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6813..6912 392..492 161 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6919 315..483 158 61.5 Plus
roo 9092 roo DM_ROO 9092bp 1006..1179 305..480 145 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2550 386..480 136 64.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2608..2685 398..475 129 62.8 Plus
roo 9092 roo DM_ROO 9092bp 1062..1158 338..434 125 58.8 Plus
accord2 7650 accord2 QBERT 7650bp 4407..4493 483..397 119 65.6 Minus

BO04646.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:02 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 1..504 17..518 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:54 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 112..629 1..525 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:13 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 149..649 17..519 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:02 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 112..629 1..525 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:43 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
CG33229-RA 149..649 17..519 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:43 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
3L 224254..224754 17..519 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:13 Download gff for BO04646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 224254..224754 17..519 99   Plus

BO04646.pep Sequence

Translation from 16 to 535

> BO04646.pep
MVAYYDECDAAENPKTLTDWVRNFRVKRQKMRRKLRGAGSDLRVNAILST
ALLHAEHELRRKQQERFSRWLDIQTRFVPHGRTHCASDAYSAVATSTTKA
AAEAEAESNLWSSELSSLDSFMRSLSSNNGNQDTCNNNNNGSNSYTGASN
NNNSNNEQHSCAIAVASASFLDH

BO04646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33229-PB 167 CG33229-PB 1..167 1..167 870 100 Plus
CG33229-PA 167 CG33229-PA 1..167 1..167 870 100 Plus