Clone Sequence Records
BO04648.3prime Sequence
982 bp (852 high quality bases) assembled on 2005-12-01
> BO04648.3prime
ATGGTCTAGAAAGCTTGCCAAGGAGCATGTGTCTTCATTAACCACCTCAG
CGTTGCAATTCTCTTCCTCCTGATGAGGCTCTTCGCACTCCTCGCCCTCC
GCTTCAGGAGTGACCTCTACATCATTGCTCTTCTCGCCCGGCTCCTCTTC
AATGAACTCCACATCATCGTGTTGCTCTTCAGCTGCCTCTTCCACCTCAT
CATGATCTTCAGTCATCTCATTCTCATTTTCATCATCATCATCTCCCTTC
ACTTCGTCCACAACGGTCAGATCAAGATGAGAAATGAACTCTTCGCCGTC
CTCTTCGGTTAGGTCAATTTCAGATAACTCGGCGGTGGACCTAGCCTCTG
AGCTGCGAACCGCCTTGAGGGCCTCCTTGCCACTTATCTCGCGGCAATTG
AGCTGGTTAAAACGGTAGCTAAGGCAAAAGCCCTTCTTCTGCACCAGGTT
GTAAGACTTACTGCCACAGCTTATTACTACCACCTTGCCATCCTTGGTCT
GGCTTATACGGCCAAATTCCCAAGTCTTCGACAGAAGGTCGCTATTCTGG
TCTTTTAAAAGTTGAAACGTGACCTTATCGGGCTCATCAGCTGAACGTGG
TACTCTGACTGTGATTCCCTTTGTGGCCGGAATATCATCCTCCGGACAAC
AAATTAGTTTAGTTTCCGGTAACGCCGTGATCTTGGAAATCGCATGCTCC
AGCCATTGGCGGGAGTTCTTGTCCATGCAGACAACTTGGATCATTCCAGT
AAGAAATTGAATGCCCCCAAAATTGATGCTGGACTTCCAACCCTTTTTCA
ACTCCTCCACAAGGCCGGCTTCGATCTCATGCAATTGCTGATTAGTCAGC
TCGCAATCCGGATAAGTTTCCGCCATTATTGCCATGGTAATACTATTCTG
TTTCGAGGTCCATGACGGCTCTGGGACCCTCTGCTTCTTTACATCCTCAT
GGGCTCTACCGCCCGACGAGTTATCATCATTC
BO04648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 1608 | CG9641-RA | 642..1605 | 982..19 | 4820 | 100 | Minus |
| CG9641-PB | 1332 | CG9641-RB | 366..1329 | 982..19 | 4820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RB | 1669 | CG9641-RB | 455..1418 | 982..19 | 4820 | 100 | Minus |
| CG9641-RA | 1933 | CG9641-RA | 719..1682 | 982..19 | 4820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975181..2976144 | 19..982 | 4820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:03 has no hits.
BO04648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:39 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PB | 366..1332 | 15..982 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:47 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PB | 366..1332 | 15..982 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:05 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 719..1687 | 13..982 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:37 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 719..1687 | 13..982 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:37 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975176..2976144 | 13..982 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:05 Download gff for
BO04648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975176..2976144 | 13..982 | 99 | | Plus |
BO04648.5prime Sequence
891 bp (768 high quality bases) assembled on 2005-11-29
> BO04648.5prime
GAAGTTATCAGTCGACATGGAGGCCACCTACCGCCAGGAACGGGAATGGC
TCAATGCCCGCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCT
TATCGCGGCTATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCC
AAATCAGACCCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGT
TCCCCTCCATGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCC
AACTCTAACTGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCG
CGACCCCTCGTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGC
CCGGCAACGGCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCA
TCCATGCAGGTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAA
GGAGCTATCGCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATC
TGGACACGGGCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGA
CGCACCAGTCCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGA
CCGCGGACGCAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCA
AGCGTGCGAATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTA
AAGAAGCAGAGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTAT
TACCATGGCAATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATC
AGCAATTGCATGAGATCGAAGCCGGCCTTGTGGAGGAGTTGAAAAGGGGT
TGGAAGTCCAGCATCAATTTTGGGGGCATTCAATTTCTTAC
BO04648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 1608 | CG9641-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
| CG9641-PB | 1332 | CG9641-RB | 1..599 | 293..891 | 2970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1933 | CG9641-RA | 78..952 | 17..891 | 4360 | 99.9 | Plus |
| CG9641-RB | 1669 | CG9641-RB | 45..688 | 248..891 | 3205 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975911..2976785 | 891..17 | 4360 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:26:16 has no hits.
BO04648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:40 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:49 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:06 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..952 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:10 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..952 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:10 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975911..2976785 | 17..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:06 Download gff for
BO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975911..2976785 | 17..891 | 99 | | Minus |
BO04648.complete Sequence
1639 bp (1639 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629825
> BO04648.complete
GAAGTTATCAGTCGACATGGAGGCCACCTACCGCCAGGAACGGGAATGGC
TCAATGCCCGCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCT
TATCGCGGCTATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCC
AAATCAGACCCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGT
TCCCCTCCATGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCC
AACTCTAACTGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCG
CGACCCCTCGTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGC
CCGGCAACGGCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCA
TCCATGCAGGTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAA
GGAGCTATCGCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATC
TGGACACGGGCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGA
CGCACCAGTCCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGA
CCGCGGACGCAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCA
AGCGTGCGAATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTA
AAGAAGCAGAGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTAT
TACCATGGCAATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATC
AGCAATTGCATGAGATCGAAGCCGGCCTTGTGGAGGAGTTGAAAAAGGGT
TGGAAGTCCAGCATCAATTTTGGGGGCATTCAATTTCTTACTGGAATGAT
CCAAGTTGTCTGCATGGACAAGAACTCCCGCCAATGGCTGGAGCATGCGA
TTTCCAAGATCACGGCGTTACCGGAAACTAAACTAATTTGTTGTCCGGAG
GATGATATTCCGGCCACAAAGGGAATCACAGTCAGAGTACCACGTTCAGC
TGATGAGCCCGATAAGGTCACGTTTCAACTTTTAAAAGACCAGAATAGCG
ACCTTCTGTCGAAGACTTGGGAATTTGGCCGTATAAGCCAGACCAAGGAT
GGCAAGGTGGTAGTAATAAGCTGTGGCAGTAAGTCTTACAACCTGGTGCA
GAAGAAGGGCTTTTGCCTTAGCTACCGTTTTAACCAGCTCAATTGCCGCG
AGATAAGTGGCAAGGAGGCCCTCAAGGCGGTTCGCAGCTCAGAGGCTAGG
TCCACCGCCGAGTTATCTGAAATTGACCTAACCGAAGAGGACGGCGAAGA
GTTCATTTCTCATCTTGATCTGACCGTTGTGGACGAAGTGAAGGGAGATG
ATGATGATGAAAATGAGAATGAGATGACTGAAGATCATGATGAGGTGGAA
GAGGCAGCTGAAGAGCAACACGATGATGTGGAGTTCATTGAAGAGGAGCC
GGGCGAGAAGAGCAATGATGTAGAGGTCACTCCTGAAGCGGAGGGCGAGG
AGTGCGAAGAGCCTCATCAGGAGGAAGAGAATTGCAACGCTGAGGTGGTT
AATGAAGACACATGCTCCTTGGCAAGCTTTCTAGACCAT
BO04648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1608 | CG9641-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| CG9641-RB | 1332 | CG9641-PB | 1..1329 | 293..1621 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1933 | CG9641-RA | 78..1682 | 17..1621 | 8025 | 100 | Plus |
| CG9641-RB | 1669 | CG9641-RB | 45..1418 | 248..1621 | 6870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975181..2976785 | 1621..17 | 8025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:32:08 has no hits.
BO04648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:04 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 1..1608 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:04 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 75..1684 | 17..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:21 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..1682 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:04 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 75..1684 | 17..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:34 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..1682 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:34 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975179..2976785 | 17..1623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:21 Download gff for
BO04648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975179..2976785 | 17..1623 | 99 | | Minus |
BO04648.pep Sequence
Translation from 16 to 1639
> BO04648.pep
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSLASFLDH
BO04648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 535 | CG9641-PA | 1..535 | 1..535 | 2849 | 100 | Plus |
| CG9641-PB | 443 | CG9641-PB | 1..443 | 93..535 | 2341 | 100 | Plus |
