Clone Sequence Records
BO04649.3prime Sequence
936 bp (874 high quality bases) assembled on 2005-12-01
> BO04649.3prime
ATGGTCTAGAAAGCTTGCCTGATTGTTATGCTTAAGCAAATAAACAATAT
CTTTGTGAAATGCGTTTAGCTCCAGCAGTGCATCCTTCATAACCTGCAGC
TTTTCTCGCTCGATCGCCAGTTTTTCCTCCTCTATTTCAAGGAGTCTGTC
CGAATGGTTGTTCGATGCTTTCCGTTTTGTCTGACATTTTGAAATTGGCG
ATGGGGAGAGATCCTTCATGTGGTCATCATCCTCCTCCTCCTCCTCCTCC
TCCTCGTCTTCTTCCGGGATTTCCGGAATACTGGGAGAGGGAGTTCGCGT
TCTTTTCATGGCTTTGCTAGCAACCATATCACTTTCGAATACGTTCCCAT
CGTCCCCGGCCATAGGCTCGTCTTTTAATGAAGACAATTCCTCAGGCTCA
TAATCCTCATCGCTGAACAAAGCTTGAGCTGGATTTTCGGCGGTAATATC
TTCGAAGACATCAACTGATTTCGTGCCAATCAGAAGTGCTTGAAGCTTAT
GAAAGTGCTCCCACTTGGATGGCACTCCAGTTTCCCGAACTCTCTCAGCT
TCTATTCTATACTTTCGCGACAAATTGTCCATTTTGGTTTTAAGCTCCGT
GTGGCTGGGCCCAAACTGACTCATCTCCCTAGCCATTTGCCGGTAGATGA
TCACATTCTTGGACTCTCCACGAAAATCCTTCAAATGCTGTGCCCACAGT
TGCAGCAACATCTTCTCCGCATCCTTTTTCCAAACGTGTCGCTCCGTTTT
CGTATAGTAGTCCTCAAACTTTTCCTCCTTGCCAACATTCTTGGGCAATG
GCGAGATGCCATTGGCTCGGATCGCTGGCTCAACGACCATTTTCTGTGCA
ACGTTTATCTTGGCGGTTCGCTGTGGTCCCGTCGGTGATCCTTCATCGCT
CAACAGGGCTTGGAGTGAGCTCTTCATGCGCGGTCC
BO04649.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6801-PA | 1176 | l(3)j2D3-RA | 256..1173 | 936..19 | 4590 | 100 | Minus |
CG2984-PA | 4284 | Pp2C1-RA | 1989..2024 | 265..230 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 387..1304 | 936..19 | 4590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12117434..12117846 | 431..19 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 12116791..12117170 | 936..557 | 1900 | 100 | Minus |
3L | 28110227 | 3L | 12117242..12117371 | 558..429 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:56:28 has no hits.
BO04649.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:40 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 256..1176 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:50 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 256..1176 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:06:58 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 387..1304 | 19..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:12 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 387..1304 | 19..936 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:12 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12117437..12117846 | 19..428 | 100 | | Minus |
3L | 12116791..12117170 | 557..936 | 100 | -> | Minus |
3L | 12117244..12117371 | 429..556 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:06:58 Download gff for
BO04649.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12109891..12110270 | 557..936 | 100 | -> | Minus |
arm_3L | 12110344..12110471 | 429..556 | 100 | -> | Minus |
arm_3L | 12110537..12110946 | 19..428 | 100 | | Minus |
BO04649.5prime Sequence
930 bp (892 high quality bases) assembled on 2005-11-29
> BO04649.5prime
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTAT
BO04649.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6801-PA | 1176 | l(3)j2D3-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 132..1045 | 17..930 | 4570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12116764..12117170 | 245..651 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 12116232..12116459 | 17..244 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 12117434..12117587 | 777..930 | 770 | 100 | Plus |
3L | 28110227 | 3L | 12117242..12117371 | 650..779 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:38:01 has no hits.
BO04649.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:41 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:51 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6801-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:44 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1045 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:57 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1045 | 17..930 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:57 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12117437..12117587 | 780..930 | 100 | | Plus |
3L | 12116232..12116459 | 17..244 | 100 | -> | Plus |
3L | 12116764..12117170 | 245..651 | 100 | -> | Plus |
3L | 12117244..12117371 | 652..779 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:44 Download gff for
BO04649.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12109332..12109559 | 17..244 | 100 | -> | Plus |
arm_3L | 12109864..12110270 | 245..651 | 100 | -> | Plus |
arm_3L | 12110344..12110471 | 652..779 | 100 | -> | Plus |
arm_3L | 12110537..12110687 | 780..930 | 100 | | Plus |
BO04649.complete Sequence
1207 bp (1207 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629826
> BO04649.complete
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTATTCCGGAAATCCCGGAAGAAG
ACGAGGAGGAGGAGGAGGAGGAGGAGGATGATGACCACATGAAGGATCTC
TCCCCATCGCCAATTTCAAAATGTCAGACAAAACGGAAAGCATCGAACAA
CCATTCGGACAGACTCCTTGAAATAGAGGAGGAAAAACTGGCGATCGAGC
GAGAAAAGCTGCAGGTTATGAAGGATGCACTGCTGGAGCTAAACGCATTT
CACAAAGATATTGTTTATTTGCTTAAGCATAACAATCAGGCAAGCTTTCT
AGACCAT
BO04649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1176 | CG6801-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-RA | 1513 | CG6801-RA | 132..1304 | 17..1189 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12117434..12117846 | 777..1189 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 12116764..12117170 | 245..651 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 12116232..12116459 | 17..244 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 12117242..12117371 | 650..779 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:13:31 has no hits.
BO04649.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:28 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 1..1176 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:18 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 97..1269 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:18 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1304 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:28 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 97..1269 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:13 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)j2D3-RA | 132..1304 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:13 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12116232..12116459 | 17..244 | 100 | -> | Plus |
3L | 12116764..12117170 | 245..651 | 100 | -> | Plus |
3L | 12117244..12117371 | 652..779 | 100 | -> | Plus |
3L | 12117437..12117846 | 780..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:18 Download gff for
BO04649.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12109332..12109559 | 17..244 | 100 | -> | Plus |
arm_3L | 12109864..12110270 | 245..651 | 100 | -> | Plus |
arm_3L | 12110344..12110471 | 652..779 | 100 | -> | Plus |
arm_3L | 12110537..12110946 | 780..1191 | 99 | | Plus |
BO04649.pep Sequence
Translation from 16 to 1207
> BO04649.pep
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQASFLDH
BO04649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)j2D3-PA | 391 | CG6801-PA | 1..391 | 1..391 | 2010 | 100 | Plus |
ssp-PA | 368 | CG17153-PA | 121..361 | 154..388 | 270 | 29.4 | Plus |