Clone BO04649 Report

Search the DGRC for BO04649

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)j2D3-RA
Protein status:BO04649.pep: validated full length
Sequenced Size:1207

Clone Sequence Records

BO04649.3prime Sequence

936 bp (874 high quality bases) assembled on 2005-12-01

> BO04649.3prime
ATGGTCTAGAAAGCTTGCCTGATTGTTATGCTTAAGCAAATAAACAATAT
CTTTGTGAAATGCGTTTAGCTCCAGCAGTGCATCCTTCATAACCTGCAGC
TTTTCTCGCTCGATCGCCAGTTTTTCCTCCTCTATTTCAAGGAGTCTGTC
CGAATGGTTGTTCGATGCTTTCCGTTTTGTCTGACATTTTGAAATTGGCG
ATGGGGAGAGATCCTTCATGTGGTCATCATCCTCCTCCTCCTCCTCCTCC
TCCTCGTCTTCTTCCGGGATTTCCGGAATACTGGGAGAGGGAGTTCGCGT
TCTTTTCATGGCTTTGCTAGCAACCATATCACTTTCGAATACGTTCCCAT
CGTCCCCGGCCATAGGCTCGTCTTTTAATGAAGACAATTCCTCAGGCTCA
TAATCCTCATCGCTGAACAAAGCTTGAGCTGGATTTTCGGCGGTAATATC
TTCGAAGACATCAACTGATTTCGTGCCAATCAGAAGTGCTTGAAGCTTAT
GAAAGTGCTCCCACTTGGATGGCACTCCAGTTTCCCGAACTCTCTCAGCT
TCTATTCTATACTTTCGCGACAAATTGTCCATTTTGGTTTTAAGCTCCGT
GTGGCTGGGCCCAAACTGACTCATCTCCCTAGCCATTTGCCGGTAGATGA
TCACATTCTTGGACTCTCCACGAAAATCCTTCAAATGCTGTGCCCACAGT
TGCAGCAACATCTTCTCCGCATCCTTTTTCCAAACGTGTCGCTCCGTTTT
CGTATAGTAGTCCTCAAACTTTTCCTCCTTGCCAACATTCTTGGGCAATG
GCGAGATGCCATTGGCTCGGATCGCTGGCTCAACGACCATTTTCTGTGCA
ACGTTTATCTTGGCGGTTCGCTGTGGTCCCGTCGGTGATCCTTCATCGCT
CAACAGGGCTTGGAGTGAGCTCTTCATGCGCGGTCC

BO04649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6801-PA 1176 l(3)j2D3-RA 256..1173 936..19 4590 100 Minus
CG2984-PA 4284 Pp2C1-RA 1989..2024 265..230 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 387..1304 936..19 4590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12117434..12117846 431..19 2065 100 Minus
3L 28110227 3L 12116791..12117170 936..557 1900 100 Minus
3L 28110227 3L 12117242..12117371 558..429 650 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:56:28 has no hits.

BO04649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:40 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 256..1176 18..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:50 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 256..1176 18..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:06:58 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 387..1304 19..936 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:12 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 387..1304 19..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:12 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12117437..12117846 19..428 100   Minus
3L 12116791..12117170 557..936 100 -> Minus
3L 12117244..12117371 429..556 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:06:58 Download gff for BO04649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109891..12110270 557..936 100 -> Minus
arm_3L 12110344..12110471 429..556 100 -> Minus
arm_3L 12110537..12110946 19..428 100   Minus

BO04649.5prime Sequence

930 bp (892 high quality bases) assembled on 2005-11-29

> BO04649.5prime
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTAT

BO04649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6801-PA 1176 l(3)j2D3-RA 1..914 17..930 4570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 132..1045 17..930 4570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12116764..12117170 245..651 2035 100 Plus
3L 28110227 3L 12116232..12116459 17..244 1140 100 Plus
3L 28110227 3L 12117434..12117587 777..930 770 100 Plus
3L 28110227 3L 12117242..12117371 650..779 650 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:38:01 has no hits.

BO04649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:41 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:51 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6801-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:44 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1045 17..930 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:57 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1045 17..930 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:57 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12117437..12117587 780..930 100   Plus
3L 12116232..12116459 17..244 100 -> Plus
3L 12116764..12117170 245..651 100 -> Plus
3L 12117244..12117371 652..779 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:44 Download gff for BO04649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109332..12109559 17..244 100 -> Plus
arm_3L 12109864..12110270 245..651 100 -> Plus
arm_3L 12110344..12110471 652..779 100 -> Plus
arm_3L 12110537..12110687 780..930 100   Plus

BO04649.complete Sequence

1207 bp (1207 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629826

> BO04649.complete
GAAGTTATCAGTCGACATGCCGTCCAGAAATATTGACGATGCCGCCGGCG
CCAAGGAGGTTCACCGAAGTACAAGGAATTCACTGATCGGCCCGAAGAGC
AAGCGAATCGCCCTAAACAGTCGCAATCGCAGTCTTGCTGCCGCCGAAAA
GAAAACTCAGTCGCAGCTGTCATTCCCGCCAAAATCGGAGTACGAGAAGT
TCTACGAGACCGTCTTCCTGGCGGAGGATTTGCAGCCGGAGGAAAATATA
ACACCAGAACGTCGTAAGCCAGGACCGCGCATGAAGAGCTCACTCCAAGC
CCTGTTGAGCGATGAAGGATCACCGACGGGACCACAGCGAACCGCCAAGA
TAAACGTTGCACAGAAAATGGTCGTTGAGCCAGCGATCCGAGCCAATGGC
ATCTCGCCATTGCCCAAGAATGTTGGCAAGGAGGAAAAGTTTGAGGACTA
CTATACGAAAACGGAGCGACACGTTTGGAAAAAGGATGCGGAGAAGATGT
TGCTGCAACTGTGGGCACAGCATTTGAAGGATTTTCGTGGAGAGTCCAAG
AATGTGATCATCTACCGGCAAATGGCTAGGGAGATGAGTCAGTTTGGGCC
CAGCCACACGGAGCTTAAAACCAAAATGGACAATTTGTCGCGAAAGTATA
GAATAGAAGCTGAGAGAGTTCGGGAAACTGGAGTGCCATCCAAGTGGGAG
CACTTTCATAAGCTTCAAGCACTTCTGATTGGCACGAAATCAGTTGATGT
CTTCGAAGATATTACCGCCGAAAATCCAGCTCAAGCTTTGTTCAGCGATG
AGGATTATGAGCCTGAGGAATTGTCTTCATTAAAAGACGAGCCTATGGCC
GGGGACGATGGGAACGTATTCGAAAGTGATATGGTTGCTAGCAAAGCCAT
GAAAAGAACGCGAACTCCCTCTCCCAGTATTCCGGAAATCCCGGAAGAAG
ACGAGGAGGAGGAGGAGGAGGAGGAGGATGATGACCACATGAAGGATCTC
TCCCCATCGCCAATTTCAAAATGTCAGACAAAACGGAAAGCATCGAACAA
CCATTCGGACAGACTCCTTGAAATAGAGGAGGAAAAACTGGCGATCGAGC
GAGAAAAGCTGCAGGTTATGAAGGATGCACTGCTGGAGCTAAACGCATTT
CACAAAGATATTGTTTATTTGCTTAAGCATAACAATCAGGCAAGCTTTCT
AGACCAT

BO04649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1176 CG6801-PA 1..1173 17..1189 5865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-RA 1513 CG6801-RA 132..1304 17..1189 5865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12117434..12117846 777..1189 2065 100 Plus
3L 28110227 3L 12116764..12117170 245..651 2035 100 Plus
3L 28110227 3L 12116232..12116459 17..244 1140 100 Plus
3L 28110227 3L 12117242..12117371 650..779 650 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:13:31 has no hits.

BO04649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:28 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 1..1176 17..1190 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:18 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 97..1269 17..1189 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:18 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1304 17..1191 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:28 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 97..1269 17..1189 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:13 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)j2D3-RA 132..1304 17..1191 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:13 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12116232..12116459 17..244 100 -> Plus
3L 12116764..12117170 245..651 100 -> Plus
3L 12117244..12117371 652..779 100 -> Plus
3L 12117437..12117846 780..1191 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:18 Download gff for BO04649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12109332..12109559 17..244 100 -> Plus
arm_3L 12109864..12110270 245..651 100 -> Plus
arm_3L 12110344..12110471 652..779 100 -> Plus
arm_3L 12110537..12110946 780..1191 99   Plus

BO04649.pep Sequence

Translation from 16 to 1207

> BO04649.pep
MPSRNIDDAAGAKEVHRSTRNSLIGPKSKRIALNSRNRSLAAAEKKTQSQ
LSFPPKSEYEKFYETVFLAEDLQPEENITPERRKPGPRMKSSLQALLSDE
GSPTGPQRTAKINVAQKMVVEPAIRANGISPLPKNVGKEEKFEDYYTKTE
RHVWKKDAEKMLLQLWAQHLKDFRGESKNVIIYRQMAREMSQFGPSHTEL
KTKMDNLSRKYRIEAERVRETGVPSKWEHFHKLQALLIGTKSVDVFEDIT
AENPAQALFSDEDYEPEELSSLKDEPMAGDDGNVFESDMVASKAMKRTRT
PSPSIPEIPEEDEEEEEEEEDDDHMKDLSPSPISKCQTKRKASNNHSDRL
LEIEEEKLAIEREKLQVMKDALLELNAFHKDIVYLLKHNNQASFLDH

BO04649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)j2D3-PA 391 CG6801-PA 1..391 1..391 2010 100 Plus
ssp-PA 368 CG17153-PA 121..361 154..388 270 29.4 Plus