Clone BO04650 Report

Search the DGRC for BO04650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG7747-RA
Protein status:BO04650.pep: validated full length
Sequenced Size:1585

Clone Sequence Records

BO04650.3prime Sequence

957 bp (818 high quality bases) assembled on 2005-12-01

> BO04650.3prime
ATGGTCTAGAAAGCTTGCCCAACTGGAGAAATCTCCAAAACCATTCGCCA
GTTTCTTCTTCTTGGCTGCTTGAGCGGATGTAAGTGGCGCCTCTGGCTTT
TTGGCCACTGTCTGAAGTTTCAGGTACTTGCCTACGCCCTCTCTGTACAC
CTTCAGTGGCTCCTTCATGCGCTTTTGCTGCTCCTCCTTCTTGACAATCT
CCTCCTTGCCGGCCGCCTCCTCCTCGCGCTCCTTGGCCAACTGTTCGGCT
GCCTCGGCAAATGGATTCACAAAGACCTGTGAGGACTCAATGATGATGTC
CTCAATTGGTCTGTCCTTGTTATCCACCTCGATATTTTCCATCTTTTGAA
GAGTGTCTAATCCTCCGACAAGCTTTCCAAAGATGGTGTGTTTGCCGTCG
AGATGTTTGCAAGAGCGATAGGTGATAAAGAACTGAGAGCCATTGGTGTT
GGGTCCCGAATTGGCCATTGATAGCACTCCTCGGCCCGTGTGCGTAAGAT
TCGGCTTAAACTCGTCCTCAAACTTCTTGCCCCAAATGGACTCGCCACCA
GAACCACTTCCAGTGGGATCACCACCTTGCACAATAAAATTCCTTATGGA
CCGGTGAAACATAACATTATTGTAGTAACCATTGGCGCAATGCTTGATGA
AGTTATCGCAGGCTCGAGGAGTTTGATCGCAGAAGAGCTCCAGGTTGAGA
GGGCCAAGGTTCGTATTTAAACGAACGTAGCCCTTCTTTTTTACCCGCTC
GTACTTGACCAAATCATCATCTATGATAGCCGCCTCTATTTGGGAAACGG
GCACCATGGCGGTAGACGTAAAACTGGCCGCCACCGCTCCAGTTGAATAG
TGAGCTGCGTTGAACTTGTCAGCTGTACGCTTCGAAGTGGAGGCCTCCTC
TTCCGCTGGCTGATAGTCCTGCTGCAGCTGTTCCAGCGTCTCCTTGGTCT
CCAAATT

BO04650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 1554 CG7747-RA 617..1551 953..19 4675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1696 CG7747-RA 709..1647 957..19 4680 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16292313..16292724 19..430 2060 100 Plus
2R 25286936 2R 16292987..16293363 581..957 1870 99.7 Plus
2R 25286936 2R 16292783..16292934 431..582 760 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:27:17 has no hits.

BO04650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:42 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 613..1554 15..957 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:52 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 613..1554 15..957 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:20 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 709..1650 15..957 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:29 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 709..1650 15..957 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:29 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16292310..16292724 15..430 99 <- Plus
2R 16292783..16292934 431..582 100 <- Plus
2R 16292989..16293363 583..957 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:20 Download gff for BO04650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12179815..12180229 15..430 99 <- Plus
arm_2R 12180288..12180439 431..582 100 <- Plus
arm_2R 12180494..12180868 583..957 99   Plus

BO04650.5prime Sequence

844 bp (843 high quality bases) assembled on 2005-11-29

> BO04650.5prime
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTCAAGTACGAGCGGGTA

BO04650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 1554 CG7747-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1696 CG7747-RA 97..924 17..844 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16293148..16293943 844..49 3980 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:38:11 has no hits.

BO04650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:43 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:54 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:46 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 89..923 9..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:20 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 89..923 9..843 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:20 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16293149..16293943 49..843 100 <- Minus
2R 16294003..16294042 9..48 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:46 Download gff for BO04650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12180654..12181448 49..843 100 <- Minus
arm_2R 12181508..12181547 9..48 92   Minus

BO04650.complete Sequence

1585 bp (1585 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629827

> BO04650.complete
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTCAAGTACGAGCGGGTAAAAAAG
AAGGGCTACGTTCGTTTAAATACGAACCTTGGCCCTCTCAACCTGGAGCT
CTTCTGCGATCAAACTCCTCGAGCCTGCGATAACTTCATCAAGCATTGCG
CCAATGGTTACTACAATAATGTTATGTTTCACCGGTCCATAAGGAATTTT
ATTGTGCAAGGTGGTGATCCCACTGGAAGTGGTTCTGGTGGCGAGTCCAT
TTGGGGCAAGAAGTTTGAGGACGAGTTTAAGCCGAATCTTACGCACACGG
GCCGAGGAGTGCTATCAATGGCCAATTCGGGACCCAACACCAATGGCTCT
CAGTTCTTTATCACCTATCGCTCTTGCAAACATCTCGACGGCAAACACAC
CATCTTTGGAAAGCTTGTCGGAGGATTAGACACTCTTCAAAAGATGGAAA
ATATCGAGGTGGATAACAAGGACAGACCAATTGAGGACATCATCATTGAG
TCCTCACAGGTCTTTGTGAATCCATTTGCCGAGGCAGCCGAACAGTTGGC
CAAGGAGCGCGAGGAGGAGGCGGCCGGCAAGGAGGAGATTGTCAAGAAGG
AGGAGCAGCAAAAGCGCATGAAGGAGCCACTGAAGGTGTACAGAGAGGGC
GTAGGCAAGTACCTGAAACTTCAGACAGTGGCCAAAAAGCCAGAGGCGCC
ACTTACATCCGCTCAAGCAGCCAAGAAGAAGAAACTGGCGAATGGTTTTG
GAGATTTCTCCAGTTGGGCAAGCTTTCTAGACCAT

BO04650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1554 CG7747-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-RA 1696 CG7747-RA 97..1647 17..1567 7755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16292987..16293943 1005..49 4785 100 Minus
2R 25286936 2R 16292313..16292724 1567..1156 2060 100 Minus
2R 25286936 2R 16292783..16292934 1155..1004 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:05 has no hits.

BO04650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:05 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 1..1554 17..1571 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:06 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 85..1646 9..1571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:06 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 97..1647 17..1569 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:06 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 85..1646 9..1571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:31 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
CG7747-RA 97..1647 17..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:31 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16292311..16292724 1156..1569 99 <- Minus
2R 16292783..16292934 1004..1155 100 <- Minus
2R 16292989..16293943 49..1003 100 <- Minus
2R 16294003..16294034 17..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:06 Download gff for BO04650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12179816..12180229 1156..1569 99 <- Minus
arm_2R 12180288..12180439 1004..1155 100 <- Minus
arm_2R 12180494..12181448 49..1003 100 <- Minus
arm_2R 12181508..12181539 17..48 100   Minus

BO04650.pep Sequence

Translation from 16 to 1585

> BO04650.pep
MGKRQHQKDKMYLTYTEWSELYGGKKVESLENDHVKFKRLPFEHCCITMA
PYEMPYCDLQGNVFEYEAILKFLKTFKVNPITGQKMDSKSLVKLNFHRNA
NDEYHCPALFKPFSKNSHIVAVATTGNVYCWEAIDQLNIKTKNWKDLVDD
TPFQRKDIITIQDPQKLEKYDISTFYHIKKNLRVLTEEEQQERKNPASGR
IKTMNLETKETLEQLQQDYQPAEEEASTSKRTADKFNAAHYSTGAVAASF
TSTAMVPVSQIEAAIIDDDLVKYERVKKKGYVRLNTNLGPLNLELFCDQT
PRACDNFIKHCANGYYNNVMFHRSIRNFIVQGGDPTGSGSGGESIWGKKF
EDEFKPNLTHTGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTIFGKL
VGGLDTLQKMENIEVDNKDRPIEDIIIESSQVFVNPFAEAAEQLAKEREE
EAAGKEEIVKKEEQQKRMKEPLKVYREGVGKYLKLQTVAKKPEAPLTSAQ
AAKKKKLANGFGDFSSWASFLDH

BO04650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7747-PA 517 CG7747-PA 1..517 1..517 2732 100 Plus
CG11777-PA 161 CG11777-PA 3..160 282..438 438 50.6 Plus
Cypl-PA 176 CG13892-PA 22..173 281..432 435 50.7 Plus
CG10907-PA 502 CG10907-PA 13..250 280..506 416 37.9 Plus
CG3511-PB 637 CG3511-PB 484..632 282..429 382 49 Plus