Clone Sequence Records
BO04650.3prime Sequence
957 bp (818 high quality bases) assembled on 2005-12-01
> BO04650.3prime
ATGGTCTAGAAAGCTTGCCCAACTGGAGAAATCTCCAAAACCATTCGCCA
GTTTCTTCTTCTTGGCTGCTTGAGCGGATGTAAGTGGCGCCTCTGGCTTT
TTGGCCACTGTCTGAAGTTTCAGGTACTTGCCTACGCCCTCTCTGTACAC
CTTCAGTGGCTCCTTCATGCGCTTTTGCTGCTCCTCCTTCTTGACAATCT
CCTCCTTGCCGGCCGCCTCCTCCTCGCGCTCCTTGGCCAACTGTTCGGCT
GCCTCGGCAAATGGATTCACAAAGACCTGTGAGGACTCAATGATGATGTC
CTCAATTGGTCTGTCCTTGTTATCCACCTCGATATTTTCCATCTTTTGAA
GAGTGTCTAATCCTCCGACAAGCTTTCCAAAGATGGTGTGTTTGCCGTCG
AGATGTTTGCAAGAGCGATAGGTGATAAAGAACTGAGAGCCATTGGTGTT
GGGTCCCGAATTGGCCATTGATAGCACTCCTCGGCCCGTGTGCGTAAGAT
TCGGCTTAAACTCGTCCTCAAACTTCTTGCCCCAAATGGACTCGCCACCA
GAACCACTTCCAGTGGGATCACCACCTTGCACAATAAAATTCCTTATGGA
CCGGTGAAACATAACATTATTGTAGTAACCATTGGCGCAATGCTTGATGA
AGTTATCGCAGGCTCGAGGAGTTTGATCGCAGAAGAGCTCCAGGTTGAGA
GGGCCAAGGTTCGTATTTAAACGAACGTAGCCCTTCTTTTTTACCCGCTC
GTACTTGACCAAATCATCATCTATGATAGCCGCCTCTATTTGGGAAACGG
GCACCATGGCGGTAGACGTAAAACTGGCCGCCACCGCTCCAGTTGAATAG
TGAGCTGCGTTGAACTTGTCAGCTGTACGCTTCGAAGTGGAGGCCTCCTC
TTCCGCTGGCTGATAGTCCTGCTGCAGCTGTTCCAGCGTCTCCTTGGTCT
CCAAATT
BO04650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-PA | 1554 | CG7747-RA | 617..1551 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-RA | 1696 | CG7747-RA | 709..1647 | 957..19 | 4680 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16292313..16292724 | 19..430 | 2060 | 100 | Plus |
2R | 25286936 | 2R | 16292987..16293363 | 581..957 | 1870 | 99.7 | Plus |
2R | 25286936 | 2R | 16292783..16292934 | 431..582 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:27:17 has no hits.
BO04650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:42 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-PA | 613..1554 | 15..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:52 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-PA | 613..1554 | 15..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:20 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 709..1650 | 15..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:29 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 709..1650 | 15..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:29 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16292310..16292724 | 15..430 | 99 | <- | Plus |
2R | 16292783..16292934 | 431..582 | 100 | <- | Plus |
2R | 16292989..16293363 | 583..957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:20 Download gff for
BO04650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12179815..12180229 | 15..430 | 99 | <- | Plus |
arm_2R | 12180288..12180439 | 431..582 | 100 | <- | Plus |
arm_2R | 12180494..12180868 | 583..957 | 99 | | Plus |
BO04650.5prime Sequence
844 bp (843 high quality bases) assembled on 2005-11-29
> BO04650.5prime
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTCAAGTACGAGCGGGTA
BO04650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-PA | 1554 | CG7747-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-RA | 1696 | CG7747-RA | 97..924 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16293148..16293943 | 844..49 | 3980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:38:11 has no hits.
BO04650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:43 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:54 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:46 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 89..923 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:20 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 89..923 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:20 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16293149..16293943 | 49..843 | 100 | <- | Minus |
2R | 16294003..16294042 | 9..48 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:46 Download gff for
BO04650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12180654..12181448 | 49..843 | 100 | <- | Minus |
arm_2R | 12181508..12181547 | 9..48 | 92 | | Minus |
BO04650.complete Sequence
1585 bp (1585 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629827
> BO04650.complete
GAAGTTATCAGTCGACATGGGTAAAAGGCAGCATCAAAAGGACAAAATGT
ACCTCACGTACACGGAGTGGAGTGAGCTGTATGGCGGCAAAAAAGTGGAA
TCCTTGGAGAACGACCATGTCAAGTTCAAGCGGCTGCCATTCGAGCACTG
CTGCATTACGATGGCGCCCTACGAGATGCCCTACTGCGATCTACAGGGCA
ATGTGTTCGAGTACGAGGCCATTCTTAAGTTTCTCAAGACCTTTAAGGTG
AACCCCATCACCGGGCAGAAGATGGACTCCAAGTCATTGGTGAAGCTGAA
CTTCCACAGGAATGCAAACGATGAGTACCACTGCCCCGCCTTGTTCAAGC
CCTTCAGCAAGAACTCGCACATCGTGGCGGTGGCCACAACTGGAAATGTA
TACTGCTGGGAGGCAATCGACCAGCTGAACATTAAGACAAAGAACTGGAA
GGATCTGGTGGATGACACGCCATTCCAGCGTAAGGATATCATCACAATAC
AAGATCCTCAGAAGCTGGAAAAGTACGACATCTCGACCTTCTATCATATT
AAGAAGAATCTACGAGTCCTGACGGAAGAAGAGCAGCAAGAGAGAAAGAA
TCCAGCCAGCGGCCGCATTAAGACCATGAATCTGGAGACCAAGGAGACGC
TGGAACAGCTGCAGCAGGACTATCAGCCAGCGGAAGAGGAGGCCTCCACT
TCGAAGCGTACAGCTGACAAGTTCAACGCAGCTCACTATTCAACTGGAGC
GGTGGCGGCCAGTTTTACGTCTACCGCCATGGTGCCCGTTTCCCAAATAG
AGGCGGCTATCATAGATGATGATTTGGTCAAGTACGAGCGGGTAAAAAAG
AAGGGCTACGTTCGTTTAAATACGAACCTTGGCCCTCTCAACCTGGAGCT
CTTCTGCGATCAAACTCCTCGAGCCTGCGATAACTTCATCAAGCATTGCG
CCAATGGTTACTACAATAATGTTATGTTTCACCGGTCCATAAGGAATTTT
ATTGTGCAAGGTGGTGATCCCACTGGAAGTGGTTCTGGTGGCGAGTCCAT
TTGGGGCAAGAAGTTTGAGGACGAGTTTAAGCCGAATCTTACGCACACGG
GCCGAGGAGTGCTATCAATGGCCAATTCGGGACCCAACACCAATGGCTCT
CAGTTCTTTATCACCTATCGCTCTTGCAAACATCTCGACGGCAAACACAC
CATCTTTGGAAAGCTTGTCGGAGGATTAGACACTCTTCAAAAGATGGAAA
ATATCGAGGTGGATAACAAGGACAGACCAATTGAGGACATCATCATTGAG
TCCTCACAGGTCTTTGTGAATCCATTTGCCGAGGCAGCCGAACAGTTGGC
CAAGGAGCGCGAGGAGGAGGCGGCCGGCAAGGAGGAGATTGTCAAGAAGG
AGGAGCAGCAAAAGCGCATGAAGGAGCCACTGAAGGTGTACAGAGAGGGC
GTAGGCAAGTACCTGAAACTTCAGACAGTGGCCAAAAAGCCAGAGGCGCC
ACTTACATCCGCTCAAGCAGCCAAGAAGAAGAAACTGGCGAATGGTTTTG
GAGATTTCTCCAGTTGGGCAAGCTTTCTAGACCAT
BO04650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-RA | 1554 | CG7747-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-RA | 1696 | CG7747-RA | 97..1647 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16292987..16293943 | 1005..49 | 4785 | 100 | Minus |
2R | 25286936 | 2R | 16292313..16292724 | 1567..1156 | 2060 | 100 | Minus |
2R | 25286936 | 2R | 16292783..16292934 | 1155..1004 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:05 has no hits.
BO04650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:40:05 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 1..1554 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:09:06 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 85..1646 | 9..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:06 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 97..1647 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:40:06 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 85..1646 | 9..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:31 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7747-RA | 97..1647 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:31 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16292311..16292724 | 1156..1569 | 99 | <- | Minus |
2R | 16292783..16292934 | 1004..1155 | 100 | <- | Minus |
2R | 16292989..16293943 | 49..1003 | 100 | <- | Minus |
2R | 16294003..16294034 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:06 Download gff for
BO04650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12179816..12180229 | 1156..1569 | 99 | <- | Minus |
arm_2R | 12180288..12180439 | 1004..1155 | 100 | <- | Minus |
arm_2R | 12180494..12181448 | 49..1003 | 100 | <- | Minus |
arm_2R | 12181508..12181539 | 17..48 | 100 | | Minus |
BO04650.pep Sequence
Translation from 16 to 1585
> BO04650.pep
MGKRQHQKDKMYLTYTEWSELYGGKKVESLENDHVKFKRLPFEHCCITMA
PYEMPYCDLQGNVFEYEAILKFLKTFKVNPITGQKMDSKSLVKLNFHRNA
NDEYHCPALFKPFSKNSHIVAVATTGNVYCWEAIDQLNIKTKNWKDLVDD
TPFQRKDIITIQDPQKLEKYDISTFYHIKKNLRVLTEEEQQERKNPASGR
IKTMNLETKETLEQLQQDYQPAEEEASTSKRTADKFNAAHYSTGAVAASF
TSTAMVPVSQIEAAIIDDDLVKYERVKKKGYVRLNTNLGPLNLELFCDQT
PRACDNFIKHCANGYYNNVMFHRSIRNFIVQGGDPTGSGSGGESIWGKKF
EDEFKPNLTHTGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTIFGKL
VGGLDTLQKMENIEVDNKDRPIEDIIIESSQVFVNPFAEAAEQLAKEREE
EAAGKEEIVKKEEQQKRMKEPLKVYREGVGKYLKLQTVAKKPEAPLTSAQ
AAKKKKLANGFGDFSSWASFLDH
BO04650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7747-PA | 517 | CG7747-PA | 1..517 | 1..517 | 2732 | 100 | Plus |
CG11777-PA | 161 | CG11777-PA | 3..160 | 282..438 | 438 | 50.6 | Plus |
Cypl-PA | 176 | CG13892-PA | 22..173 | 281..432 | 435 | 50.7 | Plus |
CG10907-PA | 502 | CG10907-PA | 13..250 | 280..506 | 416 | 37.9 | Plus |
CG3511-PB | 637 | CG3511-PB | 484..632 | 282..429 | 382 | 49 | Plus |