Clone Sequence Records
BO04651.3prime Sequence
955 bp (816 high quality bases) assembled on 2005-12-01
> BO04651.3prime
ATGGTCTAGAAAGCTTGCTTTATGACCCATACTAAATTGGGTCTCGAACG
AAAGGCGATTCATTCGGCCGTAGACCAACACCTCGCTAATGATCCGTTCG
GCGAAAAGTCGCTGATCCGGACGCATACGCCGGAAGTGGCTGGCCATCCG
TTTTCCGATCAGCTCGCACTCGTACTCGCTGTCGCTTTCATGCTTTCTGT
CTCGCTCCCTATCCCGCTCTCTATGCCAGTCTCTATCTCTATTCGAAGTC
TCCACATTTCTACGCTTTCTCGCCGCTTCAACGTAATCGGTGTCATTGCT
ACTGCGTCTTCGTCGGTTACGGATGCGACGTCCGGATTTATCCGAAGTCT
GCGATTCACCGTTATGCTGCTGGTGCGAAGATACGGTGTGCTGCTGATAG
CCATTGTTCTTAATGCTCCCAGCCGATGAATTGTTACGATAATCATCAAC
ATGATCATCCATGTTATCCAATTCGGGATCGTTATCAGGCTCGGGTTCCG
GTTCAACATCGCCATCACCCACGGCATCAAGACGTAGCATATCCTCTTCG
TGTGGAAAGGCATCAGACATAATGTCAACATCTTCGGTCTCCAATTGCTG
CATATCCTCGGTTATATTCTCATCAACTTCAATTTCTCGCTTCACAATAA
AGCTCATTGATACCTCCTGTTCCGCCAATTGCGCTCCGAATGTTATCGTT
TTATTTGACTCATTCTGCAGGACTTTCGAATTTCGAACCAAATCCCGATC
GGCGGCCACTATGCCCTCCAATTGCAGTTCACCGGTTTCCAGTTCATAGA
GAAAGTCTAGTTCTTTGAAATACCCAAGCGTTGGCTTATATGTGTTCCCA
CTATCCAGCACCTTTCGCAATTCCCGGCGATACGAGGTCCGAAAATTGTT
GATCTTACGTTTGAGCGTATGGATATGGGCATAGCTATCGGTCGTGCGTA
GCAGC
BO04651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 1020 | CG4004-RB | 81..1017 | 955..19 | 4635 | 99.7 | Minus |
CG4004-PA | 960 | CG4004-RA | 394..957 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 138..1074 | 955..19 | 4655 | 99.8 | Minus |
CG4004-RC | 1288 | CG4004-RC | 404..967 | 582..19 | 2820 | 100 | Minus |
CG4004-RE | 2237 | CG4004-RE | 739..1302 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12746869..12747432 | 582..19 | 2820 | 100 | Minus |
X | 23542271 | X | 12745495..12745868 | 955..582 | 1840 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:38:18 has no hits.
BO04651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:44 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 81..1020 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:56 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 81..1020 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:49 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 138..1078 | 14..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:33 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 138..1078 | 14..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:33 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745495..12745867 | 583..955 | 99 | -> | Minus |
X | 12746869..12747436 | 14..582 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:49 Download gff for
BO04651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639528..12639900 | 583..955 | 99 | -> | Minus |
arm_X | 12640902..12641469 | 14..582 | 99 | | Minus |
BO04651.5prime Sequence
909 bp (852 high quality bases) assembled on 2005-11-29
> BO04651.5prime
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGGAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGG
BO04651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 1020 | CG4004-RB | 1..892 | 17..908 | 4435 | 99.8 | Plus |
CG4004-PA | 960 | CG4004-RA | 394..832 | 470..908 | 2170 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 58..949 | 17..908 | 4445 | 99.9 | Plus |
CG4004-RC | 1288 | CG4004-RC | 404..842 | 470..908 | 2180 | 99.8 | Plus |
CG4004-RE | 2237 | CG4004-RE | 739..1177 | 470..908 | 2180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12745415..12745868 | 17..470 | 2270 | 100 | Plus |
X | 23542271 | X | 12746869..12747307 | 470..908 | 2180 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:27:26 has no hits.
BO04651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:45 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:58 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-PB | 1..892 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:23 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..949 | 12..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:35 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..949 | 12..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:35 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745412..12745867 | 12..469 | 99 | -> | Plus |
X | 12746869..12747307 | 470..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:23 Download gff for
BO04651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639445..12639900 | 12..469 | 99 | -> | Plus |
arm_X | 12640902..12641340 | 470..909 | 99 | | Plus |
BO04651.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629828
> BO04651.complete
GAAGTTATCAGTCGACATGCCCGAATTGTGGCTGGTGCGCAGTAAACTGT
ATCGCGATCGCCAGCTGAAGCTCGAATCCTATAGCCGATTATTAGAGCTG
CTACGCACGACCGATAGCTATGCCAATATCCATACGCTCAAACGTAAGAT
CAACAATTTTCGGACCTCGTATCGCCGGGAATTGCGAAAGGTGCTGGATA
GTGGGAACACATATAAGCCAACGCTTTGGTATTTCAAAGAACTAGACTTT
CTCTATGAACTGGAAACCGGTGAACTGCAATTGGAGGGCATAGTGGCCGC
CGATCGGGATTTGGTTCGAAATTCGAAAGTCCTGCAGAATGAGTCAAATA
AAACGATAACATTCGGAGCGCAATTGGCGGAACAGGAGGTATCAATGAGC
TTTATTGTGAAGCGAGAAATTGAAGTTGATGAGAATATAACCGAGGATAT
GCAGCAATTGGAGACCGAAGATGTTGACATTATGTCTGATGCCTTTCCAC
ACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTTGAA
CCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGATCA
TGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACAATG
GCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAATCG
CAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACGCAG
TAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATGTGG
AGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAGCGA
GACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGGAAA
ACGGATGGCCAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTTTCG
CCGAACGGATCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTT
TCGTTCGAGACCCAATTTAGTATGGGTCATAAAGCAAGCTTTCTAGACCA
T
BO04651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1020 | CG4004-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
CG4004-RC | 915 | CG4004-PC | 349..912 | 470..1033 | 2820 | 100 | Plus |
CG4004-RE | 960 | CG4004-PE | 394..957 | 470..1033 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-RB | 1395 | CG4004-RB | 58..1074 | 17..1033 | 5085 | 100 | Plus |
CG4004-RC | 1288 | CG4004-RC | 404..967 | 470..1033 | 2820 | 100 | Plus |
CG4004-RE | 2237 | CG4004-RE | 739..1302 | 470..1033 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12746869..12747432 | 470..1033 | 2820 | 100 | Plus |
X | 23542271 | X | 12745415..12745868 | 17..470 | 2270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:58:37 has no hits.
BO04651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:53 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 1..1020 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:50 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..1078 | 12..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:36 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 58..1074 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:53 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 55..1078 | 12..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:52 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4004-RB | 58..1074 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:52 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12745415..12745867 | 17..469 | 100 | -> | Plus |
X | 12746869..12747432 | 470..1035 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:36 Download gff for
BO04651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12639448..12639900 | 17..469 | 100 | -> | Plus |
arm_X | 12640902..12641465 | 470..1035 | 99 | | Plus |
BO04651.pep Sequence
Translation from 16 to 1051
> BO04651.pep
MPELWLVRSKLYRDRQLKLESYSRLLELLRTTDSYANIHTLKRKINNFRT
SYRRELRKVLDSGNTYKPTLWYFKELDFLYELETGELQLEGIVAADRDLV
RNSKVLQNESNKTITFGAQLAEQEVSMSFIVKREIEVDENITEDMQQLET
EDVDIMSDAFPHEEDMLRLDAVGDGDVEPEPEPDNDPELDNMDDHVDDYR
NNSSAGSIKNNGYQQHTVSSHQQHNGESQTSDKSGRRIRNRRRRSSNDTD
YVEAARKRRNVETSNRDRDWHRERDRERDRKHESDSEYECELIGKRMASH
FRRMRPDQRLFAERIISEVLVYGRMNRLSFETQFSMGHKASFLDH
BO04651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4004-PB | 339 | CG4004-PB | 1..339 | 1..339 | 1762 | 100 | Plus |
CG4004-PE | 319 | CG4004-PE | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PD | 319 | CG4004-PD | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PA | 319 | CG4004-PA | 29..319 | 4..339 | 1123 | 67.6 | Plus |
CG4004-PC | 304 | CG4004-PC | 113..304 | 148..339 | 1002 | 98.4 | Plus |