Clone Sequence Records
BO04652.3prime Sequence
980 bp (916 high quality bases) assembled on 2005-12-01
> BO04652.3prime
ATGGTCTAGAAAGCTTGCAATGGGCTGAACTTCCTTTTTGAGCCAGGACA
GAGTAAATTCGTCTCCTTCGCGAGATAGGATTGGGGAAAGAGTGTCCCAG
ACTTGTTGATGATAGCTGTTGAGCAGCTTTACTTCCGCATCCGATAGAAG
TTCCTTTTTAATCATTTTCGTTTGCTTCGGGCACATGGTGATGGTTTTGA
ATGTGAGGGCGCCTCGGTTGGAGAAATTGTGTGCCACCTGGCCTGGCACA
ATTTGAACAATATCCTCGACACGGATGCCAAACTCTCCGTCCTGGTAGAA
ACCAGGCTCATTGGAAATAAACATGTTCGCCTGGAGACCAGGATCGTCGG
GCATCAGTCGAATTCCTACGCCCATGGGACCTTCGTGGACATTTAGGAAG
TGACCTACTCCATGGCCGGTTCCGTGTCCGTAGTCCAAACCGACGTCCCA
CAGGGCCTTCCTCGCTAGAGTGTCAAGAACCTGTCCCTTAACCTTAGCTG
GGAATACGGTGGAGCCGAAGCTCAGTTGGCCCTTTAAAACGCGAGTGTAG
GCTTCCTTCTGAAACTCAGTGGGTTCACCGAAGTGAAGGGTCCTCGTCAC
ATCCGTAGTACCATCCAAGTATTGAGCTCCGGAATCACACAGATAAATCT
CTTTGTCATTTATCTTCCTGTTGGTTTCCTTCTTTGGGTGATAGTGAATA
ACAGAGCCGTTGGGTCCCGAAGCACTAATTGTGGTGAAGCTAAGGCCCAT
GTACTTATCCTTTGTCGACCGGAAGGACTCGAGTTTATCGGCACCAGACA
TTTCATCGACTTCCGCACCCTTATTCACTTGATCCTCAAGCCAGGCGAAA
TACTGACACAAAGCGACTCCATCGCGAATGTGGCTGTTGATGAAGCCTGC
GATCTCGACATCGTTCTTAATGGGCTTCAGCACACAAATCGGCGTTACCT
CCTGAATTCTACGTGACTTGGGTATCAAAG
BO04652.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6291-PA | 1842 | ApepP-RA | 878..1839 | 980..19 | 4785 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 1139..2100 | 980..19 | 4795 | 99.9 | Minus |
| ApepP-RA | 2066 | CG6291-RA | 1015..1976 | 980..19 | 4795 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16908319..16909280 | 19..980 | 4795 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:46:32 has no hits.
BO04652.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:46 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-PA | 878..1842 | 15..980 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:59 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6291-PA | 878..1842 | 15..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:13:21 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1015..1981 | 11..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:18 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1015..1981 | 11..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:18 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16908314..16909280 | 11..980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:13:21 Download gff for
BO04652.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16908314..16909280 | 11..980 | 99 | | Plus |
BO04652.5prime Sequence
943 bp (843 high quality bases) assembled on 2005-12-01
> BO04652.5prime
GAAGTTATCAGTCGACATGAAGAGGAGCACCACCCAAATTCTGACCAGGT
TGAGGGAGCTAATGCTCCGCGCCCAGGTGGGCGACTCCTGCGGCATATCG
GCATACATTGTGCCCTCGGACGACGCCCATCAGTCGGAGTACCAGTGCCA
GCATGACGAGCGACGCTCCTTTGTGAGTGGTTTCGATGGATCCGCTGGCA
CGGCGGTGATAACGACGGAGACCGCACTGCTGTGGACCGACGGTCGTTAC
TATCAGCAGGCGGAGAAGCAGCTGGACTCCAATTGGGTTCTAATGCGGGA
TGGTCTGAGCGCCACCCCGTCGATTGGCGCCTGGCTGGCGAAGAATCTGC
CCAAGGGCAGCTTTGTGGGCGTGGATCCTCGCCTGTTGTCGTTCCGCGTA
TGGAAACCCATCGAAACGGAACTAAGCTCCGCGGAATGCCAGCTGGTGCC
CATCGAAGGCAACCTCATCGACGAGGTCTGGGGTGAGGATCAGCCACCGC
AAACCTCAAACAAGATTATAACCCTGAAACTAGAACATTCTGGCGTAACT
ATCGCCAAAAAATGGGACGTGGTGCGCCAGCAGTTGAAGGAGAAGAATGC
TGATGCCCTGGTGGTCAGTGCTCTCGATGAAATCGCTTGGTTCTTGAACC
TACGCGGCTCGGACATTGACTTCAACCCCGTCTTCTTCTCCTACTTGATT
GTGACCAACGATGAACTACTGCTCTTTGTGGACTCTGGCAAATTGCCCAC
TGATTTTGTGCAGCATCAAAAGGAGAACAATGTGCAGATAAGCGTTTTGC
CTTACGCCTCAATTGGCATTGAAATCAGTAAGATTGTGTCGACCAGGGAG
TCAAAGATCTGGATAGCACCCACCAGCAGCTACTATCTAACTGCTTTGAT
ACCCAAGTCACGTAGAAATCAGGAAGTAACGCCGATTTGTGTG
BO04652.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6291-PA | 1842 | ApepP-RA | 1..927 | 17..943 | 4585 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 262..1188 | 17..943 | 4605 | 99.8 | Plus |
| ApepP-RA | 2066 | CG6291-RA | 138..1064 | 17..943 | 4605 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16909231..16910157 | 943..17 | 4605 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:08:52 has no hits.
BO04652.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:47 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:00 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6291-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:53:27 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 134..1064 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:04 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 134..1064 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:04 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16909231..16910161 | 9..943 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:53:27 Download gff for
BO04652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16909231..16910161 | 9..943 | 99 | | Minus |
BO04652.complete Sequence
1873 bp (1873 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629829
> BO04652.complete
GAAGTTATCAGTCGACATGAAGAGGAGCACCACCCAAATTCTGACCAGGT
TGAGGGAGCTAATGCTCCGCGCCCAGGTGGGCGACTCCTGCGGCATATCG
GCATACATTGTGCCCTCGGACGACGCCCATCAGTCGGAGTACCAGTGCCA
GCATGACGAGCGACGCTCCTTTGTGAGTGGTTTCGATGGATCCGCTGGCA
CGGCGGTGATAACGACGGAGACCGCACTGCTGTGGACCGACGGTCGTTAC
TATCAGCAGGCGGAGAAGCAGCTGGACTCCAATTGGGTTCTAATGCGGGA
TGGTCTGAGCGCCACCCCGTCGATTGGCGCCTGGCTGGCGAAGAATCTGC
CCAAGGGCAGCTTTGTGGGCGTGGATCCTCGCCTGTTGTCGTTCCGCGTA
TGGAAACCCATCGAAACGGAACTAAGCTCCGCGGAATGCCAGCTGGTGCC
CATCGAAGGCAACCTCATCGACGAGGTCTGGGGTGAGGATCAGCCACCGC
AAACCTCAAACAAGATTATAACCCTGAAACTAGAACATTCTGGCGTAACT
ATCGCCAAAAAATGGGACGTGGTGCGCCAGCAGTTGAAGGAGAAGAATGC
TGATGCCCTGGTGGTCAGTGCTCTCGATGAAATCGCTTGGTTCTTGAACC
TACGCGGCTCGGACATTGACTTCAACCCCGTCTTCTTCTCCTACTTGATT
GTGACCAACGATGAACTACTGCTCTTTGTGGACTCTGGCAAATTGCCCAC
TGATTTTGTGCAGCATCAAAAGGAGAACAATGTGCAGATAAGCGTTTTGC
CTTACGCCTCAATTGGCATTGAAATCAGTAAGATTGTGTCGACCAGGGAG
TCAAAGATCTGGATAGCACCCACCAGCAGCTACTATCTAACTGCTTTGAT
ACCCAAGTCACGTAGAATTCAGGAGGTAACGCCGATTTGTGTGCTGAAGG
CCATTAAGAACGATGTCGAGATCGCAGGCTTCATCAACAGCCACATTCGC
GATGGAGTCGCTTTGTGTCAGTATTTCGCCTGGCTTGAGGATCAAGTGAA
TAAGGGTGCGGAAGTCGATGAAATGTCTGGTGCCGATAAACTCGAGTCCT
TCCGGTCGACAAAGGATAAGTACATGGGCCTTAGCTTCACCACAATTAGT
GCTTCGGGACCCAACGGCTCTGTTATTCACTATCACCCAAAGAAGGAAAC
CAACAGGAAGATAAATGACAAAGAGATTTATCTGTGTGATTCCGGAGCTC
AATACTTGGATGGTACTACGGATGTGACGAGGACCCTTCACTTCGGTGAA
CCCACTGAGTTTCAGAAGGAAGCCTACACTCGCGTTTTAAAGGGCCAACT
GAGCTTCGGCTCCACCGTATTCCCAGCTAAGGTTAAGGGACAGGTTCTTG
ACACTCTAGCGAGGAAGGCCCTGTGGGACGTCGGTTTGGACTACGGACAC
GGAACCGGCCATGGAGTAGGTCACTTCCTAAATGTCCACGAAGGTCCCAT
GGGCGTAGGAATTCGACTGATGCCCGACGATCCTGGTCTCCAGGCGAACA
TGTTTATTTCCAATGAGCCTGGTTTCTACCAGGACGGAGAGTTTGGCATC
CGTGTCGAGGATATTGTTCAAATTGTGCCAGGCCAGGTGGCACACAATTT
CTCCAACCGAGGCGCCCTCACATTCAAAACCATCACCATGTGCCCGAAGC
AAACGAAAATGATTAAAAAGGAACTTCTATCGGATGCGGAAGTAAAGCTG
CTCAACAGCTATCATCAACAAGTCTGGGACACTCTTTCCCCAATCCTATC
TCGCGAAGGAGACGAATTTACTCTGTCCTGGCTCAAAAAGGAAGTTCAGC
CCATTGCAAGCTTTCTAGACCAT
BO04652.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 1842 | CG6291-PB | 1..1839 | 17..1855 | 9195 | 100 | Plus |
| ApepP-RA | 1842 | CG6291-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-RB | 2190 | CG6291-RB | 262..2100 | 17..1855 | 9195 | 100 | Plus |
| ApepP-RA | 2066 | CG6291-RA | 138..1976 | 17..1855 | 9195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16908319..16910157 | 1855..17 | 9195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:02 has no hits.
BO04652.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:08 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 1..1842 | 17..1859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:11 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 147..1994 | 9..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:45 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 138..1976 | 17..1857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:09 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 147..1994 | 9..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:05 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ApepP-RA | 138..1976 | 17..1857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:05 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16908317..16910157 | 17..1857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:45 Download gff for
BO04652.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16908317..16910157 | 17..1857 | 99 | | Minus |
BO04652.pep Sequence
Translation from 16 to 1873
> BO04652.pep
MKRSTTQILTRLRELMLRAQVGDSCGISAYIVPSDDAHQSEYQCQHDERR
SFVSGFDGSAGTAVITTETALLWTDGRYYQQAEKQLDSNWVLMRDGLSAT
PSIGAWLAKNLPKGSFVGVDPRLLSFRVWKPIETELSSAECQLVPIEGNL
IDEVWGEDQPPQTSNKIITLKLEHSGVTIAKKWDVVRQQLKEKNADALVV
SALDEIAWFLNLRGSDIDFNPVFFSYLIVTNDELLLFVDSGKLPTDFVQH
QKENNVQISVLPYASIGIEISKIVSTRESKIWIAPTSSYYLTALIPKSRR
IQEVTPICVLKAIKNDVEIAGFINSHIRDGVALCQYFAWLEDQVNKGAEV
DEMSGADKLESFRSTKDKYMGLSFTTISASGPNGSVIHYHPKKETNRKIN
DKEIYLCDSGAQYLDGTTDVTRTLHFGEPTEFQKEAYTRVLKGQLSFGST
VFPAKVKGQVLDTLARKALWDVGLDYGHGTGHGVGHFLNVHEGPMGVGIR
LMPDDPGLQANMFISNEPGFYQDGEFGIRVEDIVQIVPGQVAHNFSNRGA
LTFKTITMCPKQTKMIKKELLSDAEVKLLNSYHQQVWDTLSPILSREGDE
FTLSWLKKEVQPIASFLDH
BO04652.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ApepP-PB | 613 | CG6291-PB | 1..613 | 1..613 | 3199 | 100 | Plus |
| ApepP-PA | 613 | CG6291-PA | 1..613 | 1..613 | 3199 | 100 | Plus |
| CG6225-PB | 704 | CG6225-PB | 52..664 | 9..617 | 836 | 31.4 | Plus |
| CG6225-PA | 704 | CG6225-PA | 52..664 | 9..617 | 836 | 31.4 | Plus |
