Clone BO04656 Report

Search the DGRC for BO04656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG7222-RA
Protein status:BO04656.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO04656.3prime Sequence

647 bp (646 high quality bases) assembled on 2005-12-01

> BO04656.3prime
ATGGTCTAGAAAGCTTGCAAGGGGACTGTTGTCGGAGTCTTCGCGCTCTT
GGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTTT
GGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGACG
ATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAGC
CCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACGG
AACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAAA
GTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCCA
ACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAAT
GGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGTG
AAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATAT
CGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAGT
AGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAAA
CGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGACTGATAACT

BO04656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..615 633..19 3075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..721 633..19 3075 100 Minus
CG7222-RA 1523 CG7222-RA 235..849 633..19 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 496..187 1550 100 Minus
2R 25286936 2R 10814077..10814214 633..496 690 100 Minus
2R 25286936 2R 10814872..10814962 188..98 455 100 Minus
2R 25286936 2R 10815029..10815107 97..19 395 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:30:06 has no hits.

BO04656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:50 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:04 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 16..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:10 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..849 19..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:35 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..849 19..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:35 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814069..10814214 496..645 96 -> Minus
2R 10814283..10814591 187..495 100 -> Minus
2R 10814874..10814962 98..186 100 -> Minus
2R 10815029..10815107 19..97 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:10 Download gff for BO04656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701574..6701719 496..645 96 -> Minus
arm_2R 6701788..6702096 187..495 100 -> Minus
arm_2R 6702379..6702467 98..186 100 -> Minus
arm_2R 6702534..6702612 19..97 100   Minus

BO04656.5prime Sequence

647 bp (646 high quality bases) assembled on 2005-11-29

> BO04656.5prime
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACC

BO04656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..721 17..631 3075 100 Plus
CG7222-RA 1523 CG7222-RA 235..849 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 154..463 1550 100 Plus
2R 25286936 2R 10814077..10814214 17..154 690 100 Plus
2R 25286936 2R 10814872..10814962 462..552 455 100 Plus
2R 25286936 2R 10815029..10815107 553..631 395 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:26:29 has no hits.

BO04656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:51 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:06 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:08 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..849 5..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:53 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..849 5..631 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:53 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814069..10814214 5..154 96 -> Plus
2R 10814283..10814591 155..463 100 -> Plus
2R 10814874..10814962 464..552 100 -> Plus
2R 10815029..10815107 553..631 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:08 Download gff for BO04656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701574..6701719 5..154 96 -> Plus
arm_2R 6701788..6702096 155..463 100 -> Plus
arm_2R 6702379..6702467 464..552 100 -> Plus
arm_2R 6702534..6702612 553..631 100   Plus

BO04656.complete Sequence

649 bp (649 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629830

> BO04656.complete
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCAT

BO04656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 618 CG7222-PB 1..615 17..631 3075 100 Plus
CG7222-RA 618 CG7222-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..721 17..631 3075 100 Plus
CG7222-RA 1523 CG7222-RA 235..849 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 154..463 1550 100 Plus
2R 25286936 2R 10814077..10814214 17..154 690 100 Plus
2R 25286936 2R 10814872..10814962 462..552 455 100 Plus
2R 25286936 2R 10815029..10815107 553..631 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:28:06 has no hits.

BO04656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:10 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:32 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 225..847 5..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:26 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 240..849 22..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:10 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 225..847 5..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:14 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 240..849 22..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:14 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10815029..10815107 553..633 97   Plus
2R 10814082..10814214 22..154 100 -> Plus
2R 10814283..10814591 155..463 100 -> Plus
2R 10814874..10814962 464..552 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:26 Download gff for BO04656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701587..6701719 22..154 100 -> Plus
arm_2R 6701788..6702096 155..463 100 -> Plus
arm_2R 6702379..6702467 464..552 100 -> Plus
arm_2R 6702534..6702612 553..633 97   Plus

BO04656.pep Sequence

Translation from 16 to 649

> BO04656.pep
MFSNGLPCNLSFPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWIN
EYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISPRDHDELGDQFQ
FRQSIQIGCTDFTYEEVRRIVEELGNQFRGDRYHLMNNNCNHFSGSLTQI
LCGQEIPSWVNRLAHFSSCVPFLQRCLPKEWLTPNALQQSITTIQEREDS
DNSPLASFLDH

BO04656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PB 205 CG7222-PB 1..205 1..205 1120 100 Plus
CG7222-PA 205 CG7222-PA 1..205 1..205 1120 100 Plus
CG12231-PA 183 CG12231-PA 14..166 24..175 426 50.3 Plus