Clone Sequence Records
BO04656.3prime Sequence
647 bp (646 high quality bases) assembled on 2005-12-01
> BO04656.3prime
ATGGTCTAGAAAGCTTGCAAGGGGACTGTTGTCGGAGTCTTCGCGCTCTT
GGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTTT
GGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGACG
ATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAGC
CCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACGG
AACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAAA
GTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCCA
ACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAAT
GGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGTG
AAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATAT
CGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAGT
AGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAAA
CGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGACTGATAACT
BO04656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..721 | 633..19 | 3075 | 100 | Minus |
CG7222-RA | 1523 | CG7222-RA | 235..849 | 633..19 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 496..187 | 1550 | 100 | Minus |
2R | 25286936 | 2R | 10814077..10814214 | 633..496 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10814872..10814962 | 188..98 | 455 | 100 | Minus |
2R | 25286936 | 2R | 10815029..10815107 | 97..19 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:30:06 has no hits.
BO04656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:50 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:04 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:10 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..849 | 19..645 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:35 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..849 | 19..645 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:35 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814069..10814214 | 496..645 | 96 | -> | Minus |
2R | 10814283..10814591 | 187..495 | 100 | -> | Minus |
2R | 10814874..10814962 | 98..186 | 100 | -> | Minus |
2R | 10815029..10815107 | 19..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:10 Download gff for
BO04656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701574..6701719 | 496..645 | 96 | -> | Minus |
arm_2R | 6701788..6702096 | 187..495 | 100 | -> | Minus |
arm_2R | 6702379..6702467 | 98..186 | 100 | -> | Minus |
arm_2R | 6702534..6702612 | 19..97 | 100 | | Minus |
BO04656.5prime Sequence
647 bp (646 high quality bases) assembled on 2005-11-29
> BO04656.5prime
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACC
BO04656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..721 | 17..631 | 3075 | 100 | Plus |
CG7222-RA | 1523 | CG7222-RA | 235..849 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 154..463 | 1550 | 100 | Plus |
2R | 25286936 | 2R | 10814077..10814214 | 17..154 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10814872..10814962 | 462..552 | 455 | 100 | Plus |
2R | 25286936 | 2R | 10815029..10815107 | 553..631 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:26:29 has no hits.
BO04656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:51 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:06 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:27:08 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..849 | 5..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:53 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..849 | 5..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:53 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814069..10814214 | 5..154 | 96 | -> | Plus |
2R | 10814283..10814591 | 155..463 | 100 | -> | Plus |
2R | 10814874..10814962 | 464..552 | 100 | -> | Plus |
2R | 10815029..10815107 | 553..631 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:27:08 Download gff for
BO04656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701574..6701719 | 5..154 | 96 | -> | Plus |
arm_2R | 6701788..6702096 | 155..463 | 100 | -> | Plus |
arm_2R | 6702379..6702467 | 464..552 | 100 | -> | Plus |
arm_2R | 6702534..6702612 | 553..631 | 100 | | Plus |
BO04656.complete Sequence
649 bp (649 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629830
> BO04656.complete
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTGCAAGCTTTCTAGACCAT
BO04656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 618 | CG7222-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
CG7222-RA | 618 | CG7222-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..721 | 17..631 | 3075 | 100 | Plus |
CG7222-RA | 1523 | CG7222-RA | 235..849 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 154..463 | 1550 | 100 | Plus |
2R | 25286936 | 2R | 10814077..10814214 | 17..154 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10814872..10814962 | 462..552 | 455 | 100 | Plus |
2R | 25286936 | 2R | 10815029..10815107 | 553..631 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:28:06 has no hits.
BO04656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:10 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:32 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 225..847 | 5..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:26 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 240..849 | 22..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:10 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 225..847 | 5..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:14 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 240..849 | 22..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:14 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10815029..10815107 | 553..633 | 97 | | Plus |
2R | 10814082..10814214 | 22..154 | 100 | -> | Plus |
2R | 10814283..10814591 | 155..463 | 100 | -> | Plus |
2R | 10814874..10814962 | 464..552 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:26 Download gff for
BO04656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701587..6701719 | 22..154 | 100 | -> | Plus |
arm_2R | 6701788..6702096 | 155..463 | 100 | -> | Plus |
arm_2R | 6702379..6702467 | 464..552 | 100 | -> | Plus |
arm_2R | 6702534..6702612 | 553..633 | 97 | | Plus |
BO04656.pep Sequence
Translation from 16 to 649
> BO04656.pep
MFSNGLPCNLSFPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWIN
EYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISPRDHDELGDQFQ
FRQSIQIGCTDFTYEEVRRIVEELGNQFRGDRYHLMNNNCNHFSGSLTQI
LCGQEIPSWVNRLAHFSSCVPFLQRCLPKEWLTPNALQQSITTIQEREDS
DNSPLASFLDH
BO04656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PB | 205 | CG7222-PB | 1..205 | 1..205 | 1120 | 100 | Plus |
CG7222-PA | 205 | CG7222-PA | 1..205 | 1..205 | 1120 | 100 | Plus |
CG12231-PA | 183 | CG12231-PA | 14..166 | 24..175 | 426 | 50.3 | Plus |