Clone Sequence Records
BO04660.3prime Sequence
874 bp (760 high quality bases) assembled on 2005-12-01
> BO04660.3prime
ATGGTCTAGAAAGCTTGCTGTGAACATCTTCTCCAGCATTTTCCTAAGTT
TCTCCTGGGCATATCGGATCTTCTGGTACAAGTCTTTAGACACGCCGTTC
TCCACAATGGTCGAAAATCGGTAGGTGCGGAAGTTCTTCTCCTGGTCCAT
ATAGGTTATAGCACTCATGCGCGGGCAGAGGATGAGCTTCATGTGATCTG
AGAAGTTTAGCTGCACAGAACCGTTGGTCAAATGCATAACTACGGCACAT
GTTGTACGGAACCAGGAGTGTAAATGGGGCATACGCGAGATTTGATCGCT
CTCAATGTTCACATTGTTGGCACCTGCCTTCACCAGGTGCTCGATCATGT
AGCGCTTAAAGTACGACAGCAGCTTCATCTTCTTGTCAAGCGACTTGCAG
TAATCCGTGGTGGTCATGTACGTCTCCTTGCCATCCTTGTCGATGAAGTG
TACGTTGATCTGATTCGGCAGCAGGATCAGCTTTGTGGTGTCGTTGAACA
TCACGCCGATGCCCTCATCGCACAGCTGGTAACCAAATCCGTACTTGTCG
CTGTAGTCAACCCACTTGGATATCCAGAAGAGCGGCTGCGCTGCAGGATC
TGTGTTCTCGTCGCCCAGATTGCCTTGCAGAATTCGCGGCTTTCCGTTGA
TAAGATTAGTGAGCTGCTGGTACAGGCTCTCGATATCGCTGCGATAGTCC
TCGCTGTGGCGGCACACCTGCGCTGACGCGGTAATGGCGTCGTGCAGATT
GGCCTTGAGGAAGGTCGACTCCAGACGAGTGTCGTCGGGCCTGATGCCGT
TCATCTCCATCAGTGGCTTGCGGTGCATCGAATCCTCGATGGTGTCGTTG
CTGCCGATACGCGGCGCCATTGTC
BO04660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12306-PA | 1731 | polo-RA | 873..1728 | 874..19 | 4280 | 100 | Minus |
| CG12306-PB | 1731 | polo-RB | 873..1728 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 2324 | CG12306-RB | 1136..1991 | 874..19 | 4280 | 100 | Minus |
| polo-RA | 2980 | CG12306-RA | 1529..2384 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20312181..20312611 | 641..211 | 2155 | 100 | Minus |
| 3L | 28110227 | 3L | 20311883..20312117 | 874..640 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 20312677..20312870 | 212..19 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:01:12 has no hits.
BO04660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:52 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12306-PA | 873..1731 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:07 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12306-PB | 873..1731 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:56 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 1529..2389 | 13..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:54 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 1529..2389 | 13..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:54 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20311883..20312117 | 640..874 | 100 | -> | Minus |
| 3L | 20312183..20312611 | 211..639 | 100 | -> | Minus |
| 3L | 20312679..20312875 | 13..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:56 Download gff for
BO04660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20304983..20305217 | 640..874 | 100 | -> | Minus |
| arm_3L | 20305283..20305711 | 211..639 | 100 | -> | Minus |
| arm_3L | 20305779..20305975 | 13..210 | 98 | | Minus |
BO04660.5prime Sequence
895 bp (856 high quality bases) assembled on 2005-12-01
> BO04660.5prime
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAAG
GGCTCAAAGGTGCCCATGTTCTTGCCCAGCTCTTGTCTGACAATG
BO04660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12306-PA | 1731 | polo-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
| CG12306-PB | 1731 | polo-RB | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 2324 | CG12306-RB | 264..1142 | 17..895 | 4395 | 100 | Plus |
| polo-RA | 2980 | CG12306-RA | 657..1535 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20311335..20311889 | 341..895 | 2775 | 100 | Plus |
| 3L | 28110227 | 3L | 20311047..20311273 | 114..340 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 20310310..20310409 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:37:08 has no hits.
BO04660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:53 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12306-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:09 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12306-PB | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:02 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 651..1535 | 10..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:12 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 651..1535 | 10..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:12 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20310304..20310408 | 10..115 | 97 | -> | Plus |
| 3L | 20311049..20311273 | 116..340 | 100 | -> | Plus |
| 3L | 20311335..20311889 | 341..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:02 Download gff for
BO04660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20303404..20303508 | 10..115 | 97 | -> | Plus |
| arm_3L | 20304149..20304373 | 116..340 | 100 | -> | Plus |
| arm_3L | 20304435..20304989 | 341..895 | 100 | | Plus |
BO04660.complete Sequence
1762 bp (1762 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ629831
> BO04660.complete
GAAGTTATCAGTCGACATGGCCGCGAAGCCCGAGGATAAGAGCACGGATA
TTCCGGATCGCCTCGTCGACATCAACCAGCGGAAAACCTACAAGCGCATG
CGGTTCTTCGGCAAGGGCGGGTTTGCAAAATGTTACGAGATCATCGATGT
GGAAACCGACGACGTCTTCGCCGGCAAGATCGTATCCAAGAAGCTGATGA
TCAAACACAATCAGAAGGAGAAGACCGCCCAGGAGATAACTATTCACCGC
AGCCTTAACCATCCGAACATTGTCAAGTTTCACAACTACTTTGAAGATTC
GCAGAATATCTACATTGTGCTGGAGCTGTGCAAGAAAAGATCCATGATGG
AGCTGCACAAACGTAGGAAAAGCATTACGGAGTTCGAATGCCGCTACTAC
ATTTACCAGATAATCCAGGGCGTTAAGTACTTGCACGATAACCGCATTAT
CCATCGAGATCTGAAGCTGGGCAATCTCTTCCTCAACGATTTGTTGCACG
TGAAGATCGGGGATTTCGGGTTGGCCACGCGCATTGAGTATGAGGGCGAG
CGAAAAAAGACCTTATGCGGAACGCCCAACTATATAGCCCCGGAGATCCT
CACCAAGAAGGGCCACTCCTTCGAGGTGGACATCTGGTCGATTGGCTGCG
TCATGTACACACTGCTTGTGGGCCAGCCGCCGTTCGAAACCAAGACTCTG
AAGGATACGTACTCGAAAATCAAGAAGTGCGAGTACCGCGTGCCCAGCTA
CTTAAGGAAACCGGCGGCGGATATGGTCATCGCCATGCTGCAGCCAAATC
CGGAGAGCCGCCCGGCAATTGGTCAGCTGCTGAACTTTGAGTTCCTCAAG
GGCTCAAAGGTGCCCATGTTCTTGCCCAGCTCTTGTCTGACAATGGCGCC
GCGTATCGGCAGCAACGACACCATCGAGGATTCGATGCACCGCAAGCCAC
TGATGGAGATGAACGGCATCAGGCCCGACGACACTCGTCTGGAGTCGACC
TTCCTCAAGGCCAATCTGCACGACGCCATTACCGCGTCAGCGCAGGTGTG
CCGCCACAGCGAGGACTATCGCAGCGATATCGAGAGCCTGTACCAGCAGC
TCACTAATCTTATCAACGGAAAGCCGCGAATTCTGCAAGGCAATCTGGGC
GACGAGAACACAGATCCTGCAGCGCAGCCGCTCTTCTGGATATCCAAGTG
GGTTGACTACAGCGACAAGTACGGATTTGGTTACCAGCTGTGCGATGAGG
GCATCGGCGTGATGTTCAACGACACCACAAAGCTGATCCTGCTGCCGAAT
CAGATCAACGTACACTTCATCGACAAGGATGGCAAGGAGACGTACATGAC
CACCACGGATTACTGCAAGTCGCTTGACAAGAAGATGAAGCTGCTGTCGT
ACTTTAAGCGCTACATGATCGAGCACCTGGTGAAGGCAGGTGCCAACAAT
GTGAACATTGAGAGCGATCAAATCTCGCGTATGCCCCATTTACACTCCTG
GTTCCGTACAACATGTGCCGTAGTTATGCATTTGACCAACGGTTCTGTGC
AGCTAAACTTCTCAGATCACATGAAGCTCATCCTCTGCCCGCGCATGAGT
GCTATAACCTATATGGACCAGGAGAAGAACTTCCGCACCTACCGATTTTC
GACCATTGTGGAGAACGGCGTGTCTAAAGACTTGTACCAGAAGATCCGAT
ATGCCCAGGAGAAACTTAGGAAAATGCTGGAGAAGATGTTCACAGCAAGC
TTTCTAGACCAT
BO04660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 1731 | CG12306-PB | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| polo-RA | 1731 | CG12306-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-RB | 2324 | CG12306-RB | 264..1991 | 17..1744 | 8640 | 100 | Plus |
| polo-RA | 2980 | CG12306-RA | 657..2384 | 17..1744 | 8640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20311335..20312117 | 341..1123 | 3915 | 100 | Plus |
| 3L | 28110227 | 3L | 20312181..20312611 | 1122..1552 | 2155 | 100 | Plus |
| 3L | 28110227 | 3L | 20311047..20311273 | 114..340 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 20312677..20312870 | 1551..1744 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 20310310..20310409 | 17..116 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:45:11 has no hits.
BO04660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:10 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RB | 1..1731 | 17..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:13 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RB | 300..2038 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:54 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 657..2384 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:10 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RB | 300..2038 | 10..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:37 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polo-RA | 657..2384 | 17..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:37 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20310310..20310408 | 17..115 | 100 | -> | Plus |
| 3L | 20311049..20311273 | 116..340 | 100 | -> | Plus |
| 3L | 20311335..20312117 | 341..1123 | 100 | -> | Plus |
| 3L | 20312183..20312611 | 1124..1552 | 100 | -> | Plus |
| 3L | 20312679..20312870 | 1553..1746 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:54 Download gff for
BO04660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20305779..20305970 | 1553..1746 | 98 | | Plus |
| arm_3L | 20303410..20303508 | 17..115 | 100 | -> | Plus |
| arm_3L | 20304149..20304373 | 116..340 | 100 | -> | Plus |
| arm_3L | 20304435..20305217 | 341..1123 | 100 | -> | Plus |
| arm_3L | 20305283..20305711 | 1124..1552 | 100 | -> | Plus |
BO04660.pep Sequence
Translation from 16 to 1762
> BO04660.pep
MAAKPEDKSTDIPDRLVDINQRKTYKRMRFFGKGGFAKCYEIIDVETDDV
FAGKIVSKKLMIKHNQKEKTAQEITIHRSLNHPNIVKFHNYFEDSQNIYI
VLELCKKRSMMELHKRRKSITEFECRYYIYQIIQGVKYLHDNRIIHRDLK
LGNLFLNDLLHVKIGDFGLATRIEYEGERKKTLCGTPNYIAPEILTKKGH
SFEVDIWSIGCVMYTLLVGQPPFETKTLKDTYSKIKKCEYRVPSYLRKPA
ADMVIAMLQPNPESRPAIGQLLNFEFLKGSKVPMFLPSSCLTMAPRIGSN
DTIEDSMHRKPLMEMNGIRPDDTRLESTFLKANLHDAITASAQVCRHSED
YRSDIESLYQQLTNLINGKPRILQGNLGDENTDPAAQPLFWISKWVDYSD
KYGFGYQLCDEGIGVMFNDTTKLILLPNQINVHFIDKDGKETYMTTTDYC
KSLDKKMKLLSYFKRYMIEHLVKAGANNVNIESDQISRMPHLHSWFRTTC
AVVMHLTNGSVQLNFSDHMKLILCPRMSAITYMDQEKNFRTYRFSTIVEN
GVSKDLYQKIRYAQEKLRKMLEKMFTASFLDH
BO04660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polo-PB | 576 | CG12306-PB | 1..576 | 1..576 | 3046 | 100 | Plus |
| polo-PA | 576 | CG12306-PA | 1..576 | 1..576 | 3046 | 100 | Plus |
| SAK-PA | 769 | CG7186-PA | 14..267 | 25..277 | 522 | 38.9 | Plus |
| par-1-PV | 951 | CG8201-PV | 253..556 | 25..322 | 404 | 32.4 | Plus |
| aurA-PA | 411 | CG3068-PA | 131..401 | 2..272 | 392 | 31.5 | Plus |
