Clone BO04662 Report

Search the DGRC for BO04662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptdrk-RB
Protein status:BO04662.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO04662.3prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-01

> BO04662.3prime
ATGGTCTAGAAAGCTTGCTGAATGATATGGCGTCACATAAGTTGCTGGGA
AGATGCCTTTCCTATTGCCGATCTCGCCGTTCCACCAGTTCTCATCGGAG
CGATCTGTGACGGTGATGACATCGCCGCGTCTGAAGTCCAATTCCCCGGA
TTCCTGTGGCACAAAATCGTACAGCGCCTGCACGAGCATCTCTTCAGGTA
TCATATCACGCAATTTGACATCCTGCGACCGGGACACGCTCGCCGTCCGA
TGATATTCGACCAGTTCGTTGAGGGAGTTGAACTTGACCACCCAGAGGAA
GAATTTGCTTTGGGCATCGCGCAGAACCTTGAAATGCTGAACGCCATCGG
GGCATTTGACTGATAAGGAGAAATCGCCGGGACTGGATTCGCTGATGCGT
ATCAAGAAGGCGCCTTCGTGCTTATTTGACAGCAGCTTCTCAGCATCGGC
GCGTGTGATGCGTCCGTAATACCAGTCGTGATTCTTCATTTCTATGTAAT
TACTAGGTATGAGGCCTTCCTTTCCATCCAGCTCCGCGCGATACCAATTT
GAATCGTCTTCCATATTTAATATCTTTAGAATCTGAGTTTTGCGAAAACT
CAGCTCGTCGTCAGCCGTCGCAGAGAAATCGTGTTTGGCAATCGCTTCCA
TGTCGACTGATAACT

BO04662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6033-PE 636 drk-RE 1..633 651..19 3165 100 Minus
CG6033-PC 636 drk-RC 1..633 651..19 3165 100 Minus
CG6033-PB 636 drk-RB 1..633 651..19 3165 100 Minus
CG6033-PA 636 drk-RA 1..633 651..19 3165 100 Minus
CG6033-PF 636 drk-RF 1..633 651..19 3165 100 Minus
CG6033-PD 636 drk-RD 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1036 651..19 3165 100 Minus
drk-RF 2577 CG6033-RF 186..818 651..19 3165 100 Minus
drk-RA 2744 CG6033-RA 353..985 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496981..13497153 19..191 865 100 Plus
2R 25286936 2R 13497368..13497537 190..359 835 99.4 Plus
2R 25286936 2R 13497613..13497732 356..475 600 100 Plus
2R 25286936 2R 13497792..13497891 476..575 500 100 Plus
2R 25286936 2R 13501813..13501890 574..651 390 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:29:32 has no hits.

BO04662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:53 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-PB 1..636 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:11 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6033-PD 1..636 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:35 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..988 15..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:00 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..988 15..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:00 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13496978..13497151 15..189 98 <- Plus
2R 13497368..13497533 190..355 100 <- Plus
2R 13497613..13497732 356..475 100 <- Plus
2R 13497792..13497889 476..573 100 <- Plus
2R 13501813..13501897 574..659 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:35 Download gff for BO04662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9384483..9384656 15..189 98 <- Plus
arm_2R 9384873..9385038 190..355 100 <- Plus
arm_2R 9385118..9385237 356..475 100 <- Plus
arm_2R 9385297..9385394 476..573 100 <- Plus
arm_2R 9389318..9389402 574..659 96   Plus

BO04662.5prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-01

> BO04662.5prime
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAG
CAAGCTTTCTAGACC

BO04662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6033-PE 636 drk-RE 1..633 17..649 3165 100 Plus
CG6033-PC 636 drk-RC 1..633 17..649 3165 100 Plus
CG6033-PB 636 drk-RB 1..633 17..649 3165 100 Plus
CG6033-PA 636 drk-RA 1..633 17..649 3165 100 Plus
CG6033-PF 636 drk-RF 1..633 17..649 3165 100 Plus
CG6033-PD 636 drk-RD 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1036 17..649 3165 100 Plus
drk-RF 2577 CG6033-RF 186..818 17..649 3165 100 Plus
drk-RA 2744 CG6033-RA 353..985 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496981..13497153 649..477 865 100 Minus
2R 25286936 2R 13497368..13497537 478..309 835 99.4 Minus
2R 25286936 2R 13497613..13497732 312..193 600 100 Minus
2R 25286936 2R 13497792..13497891 192..93 500 100 Minus
2R 25286936 2R 13501813..13501890 94..17 390 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:30:15 has no hits.

BO04662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:54 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-PB 1..636 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:13 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6033-PD 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:12 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..988 9..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:17 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
drk-RA 346..988 9..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:17 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13501813..13501897 9..94 96   Minus
2R 13497613..13497732 193..312 100 <- Minus
2R 13497792..13497889 95..192 100 <- Minus
2R 13496978..13497151 479..653 98 <- Minus
2R 13497368..13497533 313..478 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:12 Download gff for BO04662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9384483..9384656 479..653 98 <- Minus
arm_2R 9384873..9385038 313..478 100 <- Minus
arm_2R 9385118..9385237 193..312 100 <- Minus
arm_2R 9385297..9385394 95..192 100 <- Minus
arm_2R 9389318..9389402 9..94 96   Minus

BO04662.complete Sequence

667 bp (667 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629832

> BO04662.complete
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAG
CAAGCTTTCTAGACCAT

BO04662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 636 CG6033-PD 1..633 17..649 3165 100 Plus
drk-RF 636 CG6033-PF 1..633 17..649 3165 100 Plus
drk-RA 636 CG6033-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
drk-RD 2795 CG6033-RD 404..1036 17..649 3165 100 Plus
drk-RF 2577 CG6033-RF 186..818 17..649 3165 100 Plus
drk-RA 2744 CG6033-RA 353..985 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13496981..13497153 649..477 865 100 Minus
2R 25286936 2R 13497368..13497537 478..309 835 99.4 Minus
2R 25286936 2R 13497613..13497732 312..193 600 100 Minus
2R 25286936 2R 13497792..13497891 192..93 500 100 Minus
2R 25286936 2R 13501813..13501890 94..17 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:58:56 has no hits.

BO04662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:29 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:20 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 273..915 9..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:34 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RA 353..985 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:29 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RB 273..915 9..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:40 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
drk-RA 353..985 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:40 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13496979..13497151 479..651 98 <- Minus
2R 13497368..13497533 313..478 100 <- Minus
2R 13497613..13497732 193..312 100 <- Minus
2R 13497792..13497889 95..192 100 <- Minus
2R 13501813..13501890 17..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:34 Download gff for BO04662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9384484..9384656 479..651 98 <- Minus
arm_2R 9384873..9385038 313..478 100 <- Minus
arm_2R 9385118..9385237 193..312 100 <- Minus
arm_2R 9385297..9385394 95..192 100 <- Minus
arm_2R 9389318..9389395 17..94 100   Minus

BO04662.pep Sequence

Translation from 16 to 667

> BO04662.pep
MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPS
NYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKC
PDGVQHFKVLRDAQSKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM
IPEEMLVQALYDFVPQESGELDFRRGDVITVTDRSDENWWNGEIGNRKGI
FPATYVTPYHSASFLDH

BO04662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
drk-PD 211 CG6033-PD 1..211 1..211 1115 100 Plus
drk-PF 211 CG6033-PF 1..211 1..211 1115 100 Plus
drk-PA 211 CG6033-PA 1..211 1..211 1115 100 Plus
drk-PB 211 CG6033-PB 1..211 1..211 1115 100 Plus
drk-PC 211 CG6033-PC 1..211 1..211 1115 100 Plus