Clone Sequence Records
BO04662.3prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-01
> BO04662.3prime
ATGGTCTAGAAAGCTTGCTGAATGATATGGCGTCACATAAGTTGCTGGGA
AGATGCCTTTCCTATTGCCGATCTCGCCGTTCCACCAGTTCTCATCGGAG
CGATCTGTGACGGTGATGACATCGCCGCGTCTGAAGTCCAATTCCCCGGA
TTCCTGTGGCACAAAATCGTACAGCGCCTGCACGAGCATCTCTTCAGGTA
TCATATCACGCAATTTGACATCCTGCGACCGGGACACGCTCGCCGTCCGA
TGATATTCGACCAGTTCGTTGAGGGAGTTGAACTTGACCACCCAGAGGAA
GAATTTGCTTTGGGCATCGCGCAGAACCTTGAAATGCTGAACGCCATCGG
GGCATTTGACTGATAAGGAGAAATCGCCGGGACTGGATTCGCTGATGCGT
ATCAAGAAGGCGCCTTCGTGCTTATTTGACAGCAGCTTCTCAGCATCGGC
GCGTGTGATGCGTCCGTAATACCAGTCGTGATTCTTCATTTCTATGTAAT
TACTAGGTATGAGGCCTTCCTTTCCATCCAGCTCCGCGCGATACCAATTT
GAATCGTCTTCCATATTTAATATCTTTAGAATCTGAGTTTTGCGAAAACT
CAGCTCGTCGTCAGCCGTCGCAGAGAAATCGTGTTTGGCAATCGCTTCCA
TGTCGACTGATAACT
BO04662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6033-PE | 636 | drk-RE | 1..633 | 651..19 | 3165 | 100 | Minus |
CG6033-PC | 636 | drk-RC | 1..633 | 651..19 | 3165 | 100 | Minus |
CG6033-PB | 636 | drk-RB | 1..633 | 651..19 | 3165 | 100 | Minus |
CG6033-PA | 636 | drk-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
CG6033-PF | 636 | drk-RF | 1..633 | 651..19 | 3165 | 100 | Minus |
CG6033-PD | 636 | drk-RD | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1036 | 651..19 | 3165 | 100 | Minus |
drk-RF | 2577 | CG6033-RF | 186..818 | 651..19 | 3165 | 100 | Minus |
drk-RA | 2744 | CG6033-RA | 353..985 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496981..13497153 | 19..191 | 865 | 100 | Plus |
2R | 25286936 | 2R | 13497368..13497537 | 190..359 | 835 | 99.4 | Plus |
2R | 25286936 | 2R | 13497613..13497732 | 356..475 | 600 | 100 | Plus |
2R | 25286936 | 2R | 13497792..13497891 | 476..575 | 500 | 100 | Plus |
2R | 25286936 | 2R | 13501813..13501890 | 574..651 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:29:32 has no hits.
BO04662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:53 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-PB | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:11 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6033-PD | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:35 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 15..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:00 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 15..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:00 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496978..13497151 | 15..189 | 98 | <- | Plus |
2R | 13497368..13497533 | 190..355 | 100 | <- | Plus |
2R | 13497613..13497732 | 356..475 | 100 | <- | Plus |
2R | 13497792..13497889 | 476..573 | 100 | <- | Plus |
2R | 13501813..13501897 | 574..659 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:35 Download gff for
BO04662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384483..9384656 | 15..189 | 98 | <- | Plus |
arm_2R | 9384873..9385038 | 190..355 | 100 | <- | Plus |
arm_2R | 9385118..9385237 | 356..475 | 100 | <- | Plus |
arm_2R | 9385297..9385394 | 476..573 | 100 | <- | Plus |
arm_2R | 9389318..9389402 | 574..659 | 96 | | Plus |
BO04662.5prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-01
> BO04662.5prime
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAG
CAAGCTTTCTAGACC
BO04662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6033-PE | 636 | drk-RE | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6033-PC | 636 | drk-RC | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6033-PB | 636 | drk-RB | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6033-PA | 636 | drk-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6033-PF | 636 | drk-RF | 1..633 | 17..649 | 3165 | 100 | Plus |
CG6033-PD | 636 | drk-RD | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1036 | 17..649 | 3165 | 100 | Plus |
drk-RF | 2577 | CG6033-RF | 186..818 | 17..649 | 3165 | 100 | Plus |
drk-RA | 2744 | CG6033-RA | 353..985 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496981..13497153 | 649..477 | 865 | 100 | Minus |
2R | 25286936 | 2R | 13497368..13497537 | 478..309 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 13497613..13497732 | 312..193 | 600 | 100 | Minus |
2R | 25286936 | 2R | 13497792..13497891 | 192..93 | 500 | 100 | Minus |
2R | 25286936 | 2R | 13501813..13501890 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:30:15 has no hits.
BO04662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:54 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-PB | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:13 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6033-PD | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:12 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:17 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 346..988 | 9..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:17 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13501813..13501897 | 9..94 | 96 | | Minus |
2R | 13497613..13497732 | 193..312 | 100 | <- | Minus |
2R | 13497792..13497889 | 95..192 | 100 | <- | Minus |
2R | 13496978..13497151 | 479..653 | 98 | <- | Minus |
2R | 13497368..13497533 | 313..478 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:12 Download gff for
BO04662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384483..9384656 | 479..653 | 98 | <- | Minus |
arm_2R | 9384873..9385038 | 313..478 | 100 | <- | Minus |
arm_2R | 9385118..9385237 | 193..312 | 100 | <- | Minus |
arm_2R | 9385297..9385394 | 95..192 | 100 | <- | Minus |
arm_2R | 9389318..9389402 | 9..94 | 96 | | Minus |
BO04662.complete Sequence
667 bp (667 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629832
> BO04662.complete
GAAGTTATCAGTCGACATGGAAGCGATTGCCAAACACGATTTCTCTGCGA
CGGCTGACGACGAGCTGAGTTTTCGCAAAACTCAGATTCTAAAGATATTA
AATATGGAAGACGATTCAAATTGGTATCGCGCGGAGCTGGATGGAAAGGA
AGGCCTCATACCTAGTAATTACATAGAAATGAAGAATCACGACTGGTATT
ACGGACGCATCACACGCGCCGATGCTGAGAAGCTGCTGTCAAATAAGCAC
GAAGGCGCCTTCTTGATACGCATCAGCGAATCCAGTCCCGGCGATTTCTC
CTTATCAGTCAAATGCCCCGATGGCGTTCAGCATTTCAAGGTTCTGCGCG
ATGCCCAAAGCAAATTCTTCCTCTGGGTGGTCAAGTTCAACTCCCTCAAC
GAACTGGTCGAATATCATCGGACGGCGAGCGTGTCCCGGTCGCAGGATGT
CAAATTGCGTGATATGATACCTGAAGAGATGCTCGTGCAGGCGCTGTACG
ATTTTGTGCCACAGGAATCCGGGGAATTGGACTTCAGACGCGGCGATGTC
ATCACCGTCACAGATCGCTCCGATGAGAACTGGTGGAACGGCGAGATCGG
CAATAGGAAAGGCATCTTCCCAGCAACTTATGTGACGCCATATCATTCAG
CAAGCTTTCTAGACCAT
BO04662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 636 | CG6033-PD | 1..633 | 17..649 | 3165 | 100 | Plus |
drk-RF | 636 | CG6033-PF | 1..633 | 17..649 | 3165 | 100 | Plus |
drk-RA | 636 | CG6033-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-RD | 2795 | CG6033-RD | 404..1036 | 17..649 | 3165 | 100 | Plus |
drk-RF | 2577 | CG6033-RF | 186..818 | 17..649 | 3165 | 100 | Plus |
drk-RA | 2744 | CG6033-RA | 353..985 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13496981..13497153 | 649..477 | 865 | 100 | Minus |
2R | 25286936 | 2R | 13497368..13497537 | 478..309 | 835 | 99.4 | Minus |
2R | 25286936 | 2R | 13497613..13497732 | 312..193 | 600 | 100 | Minus |
2R | 25286936 | 2R | 13497792..13497891 | 192..93 | 500 | 100 | Minus |
2R | 25286936 | 2R | 13501813..13501890 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:56 has no hits.
BO04662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:29 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:20 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 273..915 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:34 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 353..985 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:29 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RB | 273..915 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:40 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
drk-RA | 353..985 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:40 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13496979..13497151 | 479..651 | 98 | <- | Minus |
2R | 13497368..13497533 | 313..478 | 100 | <- | Minus |
2R | 13497613..13497732 | 193..312 | 100 | <- | Minus |
2R | 13497792..13497889 | 95..192 | 100 | <- | Minus |
2R | 13501813..13501890 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:34 Download gff for
BO04662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9384484..9384656 | 479..651 | 98 | <- | Minus |
arm_2R | 9384873..9385038 | 313..478 | 100 | <- | Minus |
arm_2R | 9385118..9385237 | 193..312 | 100 | <- | Minus |
arm_2R | 9385297..9385394 | 95..192 | 100 | <- | Minus |
arm_2R | 9389318..9389395 | 17..94 | 100 | | Minus |
BO04662.pep Sequence
Translation from 16 to 667
> BO04662.pep
MEAIAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPS
NYIEMKNHDWYYGRITRADAEKLLSNKHEGAFLIRISESSPGDFSLSVKC
PDGVQHFKVLRDAQSKFFLWVVKFNSLNELVEYHRTASVSRSQDVKLRDM
IPEEMLVQALYDFVPQESGELDFRRGDVITVTDRSDENWWNGEIGNRKGI
FPATYVTPYHSASFLDH
BO04662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
drk-PD | 211 | CG6033-PD | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PF | 211 | CG6033-PF | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PA | 211 | CG6033-PA | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PB | 211 | CG6033-PB | 1..211 | 1..211 | 1115 | 100 | Plus |
drk-PC | 211 | CG6033-PC | 1..211 | 1..211 | 1115 | 100 | Plus |