Clone Sequence Records
BO04664.3prime Sequence
945 bp (811 high quality bases) assembled on 2005-12-01
> BO04664.3prime
ATGGTCTAGAAAGCTTGCCGGTTTGTTATAACGATATCTTAACTTATCGC
TCGGCTCGCAGTACTCCTTGATAATGAGCTTGCACAGGAATATGTGGAAT
ACTATGATTATTGCGCACACGGAAACCCAGAAGAGCGTGGGCAATCCACC
CAGTTGGTGGCCATGCCGATGCAGTGCGATCAAATGCTGCTCATGGGCGG
GAGCCTCGACCACTTCCTTCACGTGGATGGCATGGTGCAGCTCTTCCATG
TGTTGCTTGTCCTCGGTTATGTATAATATTGCTGTTAGCGGTTCAGTCAG
TTTGACTGGGAATTGTCGTCGGTTTTGCGTGAGCAGCACGGGCTCATCCA
GGCAGCCGCCATCGCAAGCGTAGTAGCTCCTGTCTGAACGATCCAGCGCG
ATGTTGATCACCGCCTTGTTGTCATCATCCACAATGATGGTGACGTTGAC
ATGGGTTTTGTTGCCGTAATTGAGGCGCCTGAAGTGGAAGTCCCTATGCA
GAAACTTCGGATGGATGTTGCACTCCAGATGCTGATTGCTAAAACGAAAG
CTGCCAAAGCTCAGGACCATGGCTTGGATGACTCCCGAAGCTCCCGCTCG
AATAAGATTGTGGCAGCCCTGTTTCTCCAACGTTAGCATCCACGACGTAA
CCAGGGAGTTAAGCTGCTGAAGATTAGACATCTCGCGCCAAAGATTCTCC
GCCTGCAGAGTGTGATACGAATCGTAGCAGCCTTCGGCGTACGTTAGCGC
CTTTGCTATATCCTCCTTTTTGGAGCCACCCGCCTCCTCGAACTCGAAGC
TGCGCACCTGGGAGAGAACTGCATACATCGTGGCATTGATGCGGTCGCCG
TTTCAGCTATTCTCCGCCTTGGATGTGCTTATCGTAAATCCAGTGGCCCA
CAAATCAGTCCAAACGTCAATGTGCTCCTGGGCGATAGATGTTTA
BO04664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 1914 | CG7289-RA | 999..1911 | 931..19 | 4515 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 1081..2006 | 945..19 | 4580 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1983345..1983961 | 945..328 | 3010 | 99.5 | Minus |
| 2L | 23513712 | 2L | 1984205..1984390 | 204..19 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 1984019..1984143 | 328..204 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:27:35 has no hits.
BO04664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:55 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 987..1914 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:14 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 987..1914 | 16..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:24 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 1082..2013 | 12..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:42 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 1082..2013 | 12..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:42 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1983346..1983960 | 329..944 | 99 | -> | Minus |
| 2L | 1984019..1984143 | 204..328 | 100 | -> | Minus |
| 2L | 1984206..1984397 | 12..203 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:24 Download gff for
BO04664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1983346..1983960 | 329..944 | 99 | -> | Minus |
| arm_2L | 1984019..1984143 | 204..328 | 100 | -> | Minus |
| arm_2L | 1984206..1984397 | 12..203 | 97 | | Minus |
BO04664.5prime Sequence
889 bp (822 high quality bases) assembled on 2005-12-01
> BO04664.5prime
GAAGTTATCAGTCGACATGTTGTTCCGCTCAGCGAAAAGCAAGTTCGACG
CCGGCGACGTGATGCGTCGAATGAAACGCCTGGCGGAGGGCACGATCTCC
TCGTACCGCCGCTTGTTCCTCCTGCTCCTCTGCGTCTGTGTGGTCTTCTA
TATGATTCCGCCGATCTTTCGCTATATCTTCCTTAGTGCTCCAGAACAGA
AGGATCCCCACAGTATGTGCATGGATGACCGGCTGACGCCCTTCATCCTC
CAGAACTTTGAATTCGATGCCAATATCCGTCACGTGTCACCAGCGAAAAT
GCCTGGTGAACGCGATTTCACGCCCTACGTCGGCAACGGCTACCTGGGCC
TGGAGATCGCACACGACGCTTTCCTGAACATCAAGAATGGCAGGGCCATG
CAGCTGCCTATTCCTTTCCAGCCGGTGGTCTCCGTTTCGGGAGGATCCGC
ATCTGGCGGCGAAAAGGAAGCCACTGTCGTCGAATATCTGACGGGAATGG
TGCATCGGTTCCAATGCTTTGCCGGTTACTTTGTTTCGTACACCTACTAC
GCCCATCGCACTCAGCCGAATATCTTCATGCAAGAGCTGCAGATCACAAA
CACCAGGAACCTCTTGGAGGACATAGAACTGATCATGCCACGCGTCAATC
TCCAGAAGCTCACCAGGCGAACTGTTCCCCTAAGTGAACCCGTCTCCGTG
GGAGTGTTCACCTACACAGAGTTGGAGGTGCTCTCGGGCACAGTCCAGCT
TCAGGCAGAAAATCCCAGTAAATCCATTGTTATAAGCATAGTGAAGCCGC
AGATGGACTCCAAGCTGCAGCTGAGAAAGCGCGGCACAGTGCGAATTGTG
TATCCCACAGCAGTGCATTACTCAAAACCAGTGGCGGGA
BO04664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 1914 | CG7289-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 96..966 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1982546..1983230 | 203..887 | 3425 | 100 | Plus |
| 2L | 23513712 | 2L | 1982312..1982498 | 17..203 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:10:38 has no hits.
BO04664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:56 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:16 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:02 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..966 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:08 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 96..966 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:08 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1982312..1982498 | 17..203 | 100 | -> | Plus |
| 2L | 1982547..1983230 | 204..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:02 Download gff for
BO04664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1982312..1982498 | 17..203 | 100 | -> | Plus |
| arm_2L | 1982547..1983230 | 204..888 | 99 | | Plus |
BO04664.complete Sequence
1945 bp assembled on 2008-08-14
GenBank Submission: FJ629833
> BO04664.complete
GAAGTTATCAGTCGACATGTTGTTCCGCTCAGCGAAAAGCAAGTTCGACG
CCGGCGACGTGATGCGTCGAATGAAACGCCTGGCGGAGGGCACGATCTCC
TCGTACCGCCGCTTGTTCCTCCTGCTCCTCTGCGTCTGTGTGGTCTTCTA
TATGATTCCGCCGATCTTTCGCTATATCTTCCTTAGTGCTCCAGAACAGA
AGGATCCCCACAGTATGTGCATGGATGACCGGCTGACGCCCTTCATCCTC
CAGAACTTTGAATTCGATGCCAATATCCGTCACGTGTCACCAGCGAAAAT
GCCTGGTGAACGCGATTTCACGCCCTACGTCGGCAACGGCTACCTGGGCC
TGGAGATCGCACACGACGCTTTCCTGAACATCAAGAATGGCAGGGCCATG
CAGCTGCCTATTCCTTTCCAGCCGGTGGTCTCCGTTTCGGGAGGATCCGC
ATCTGGCGGCGAAAAGGAAGCCACTGTCGTCGAATATCTGACGGGAATGG
TGCATCGGTTCCAATGCTTTGCCGGTTACTTTGTTTCGTACACCTACTAC
GCCCATCGCACTCAGCCGAATATCTTCATGCAAGAGCTGCAGATCACAAA
CACCAGGAACCTCTTGGAGGACATAGAACTGATCATGCCACGCGTCAATC
TCCAGAAGCTCACCAGGCGAACTGTTCCCCTAAGTGAACCCGTCTCCGTG
GGAGTGTTCACCTACACAGAGTTGGAGGTGCTCTCGGGCACAGTCCAGCT
TCAGGCAGAAAATCCCAGTAAATCCATTGTTATAAGCATAGTGAAGCCGC
AGATGGACTCCAAGCTGCAGCTGAGAAAGCGCGGCACAGTGCGAATTGTG
TATCCCACAGCAGTGCATTACTCAAAACCAGTGGCGGAGGAAAAAATCGG
TGGTATAAGCGAGACCATCGAGCAGCAGGCCACTCAGGCGATGGCGAAGC
TGCTCCAAAAGCTTGGCTCCAAGCCCTCAAACCCAGGATCCTTGAACAGC
GTAAACATCTATCGCCAGGAGCACATTGACGTTTGGACTGATTTGTGGGC
CACTGGATTTACGATAAGCACATCCAAGGCGGAGAATAGCTTGAACGGCG
ACCGCATCAATGCCACGATGTATGCAGTTCTCTCCCAGGTGCGCAGCTTC
GAGTTCGAGGAGGCGGGTGGCTCCAAAAAGGAGGATATAGCAAAGGCGCT
AACGTACGCCGAAGGCTGCTACGATTCGTATCACACTCTGCAGGCGGAGA
ATCTTTGGCGCGAGATGTCTAATCTTCAGCAGCTTAACTCCCTGGTTACG
TCGTGGATGCTAACGTTGGAGAAACAGGGCTGCCACAATCTTATTCGAGC
GGGAGCTTCGGGAGTCATCCAAGCCATGGTCCTGAGCTTTGGCAGCTTTC
GTTTTAGCAATCAGCATCTGGAGTGCAACATCCATCCGAAGTTTCTGCAT
AGGGACTTCCACTTCAGGCGCCTCAATTACGGCAACAAAACCCATGTCAA
CGTCACCATCATTGTGGATGATGACAACAAGGCGGTGATCAACATCGCGC
TGGATCGTTCAGACAGGAGCTACTACGCTTGCGATGGCGGCTGCCTGGAT
GAGCCCGTGCTGCTCACGCAAAACCGACGACAATTCCCAGTCAAACTGAC
TGAACCGCTAACAGCAATATTATACATAACCGAGGACAAGCAACACATGG
AAGAGCTGCACCATGCCATCCACGTGAAGGAAGTGGTCGAGGCTCCCGCC
CATGAGCAGCATTTGATCGCACTGCATCGGCATGGCCACCAACTGGGTGG
ATTGCCCACGCTCTTCTGGGTTTCCGTGTGCGCAATAATCATAGTATTCC
ACATATTCCTGTGCAAGCTCATTATCAAGGAGTACTGCGAGCCGAGCGAT
AAGTTAAGATATCGTTATAACAAACCGGCAAGCTTTCTAGACCAT
BO04664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 1914 | CG7289-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-RA | 2130 | CG7289-RA | 96..2006 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1982546..1983961 | 203..1618 | 7080 | 100 | Plus |
| 2L | 23513712 | 2L | 1982312..1982498 | 17..203 | 935 | 100 | Plus |
| 2L | 23513712 | 2L | 1984205..1984390 | 1742..1927 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 1984019..1984143 | 1618..1742 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:21:46 has no hits.
BO04664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:17 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 79..1996 | 17..1934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:59 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 101..2006 | 22..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:54 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 84..1989 | 22..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:53 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7289-RA | 101..2006 | 22..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:53 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1982317..1982498 | 22..203 | 100 | -> | Plus |
| 2L | 1982547..1983960 | 204..1617 | 100 | -> | Plus |
| 2L | 1984019..1984143 | 1618..1742 | 100 | -> | Plus |
| 2L | 1984206..1984390 | 1743..1929 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:59 Download gff for
BO04664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1982317..1982498 | 22..203 | 100 | -> | Plus |
| arm_2L | 1982547..1983960 | 204..1617 | 100 | -> | Plus |
| arm_2L | 1984019..1984143 | 1618..1742 | 100 | -> | Plus |
| arm_2L | 1984206..1984390 | 1743..1929 | 98 | | Plus |
BO04664.pep Sequence
Translation from 16 to 1945
> BO04664.pep
MLFRSAKSKFDAGDVMRRMKRLAEGTISSYRRLFLLLLCVCVVFYMIPPI
FRYIFLSAPEQKDPHSMCMDDRLTPFILQNFEFDANIRHVSPAKMPGERD
FTPYVGNGYLGLEIAHDAFLNIKNGRAMQLPIPFQPVVSVSGGSASGGEK
EATVVEYLTGMVHRFQCFAGYFVSYTYYAHRTQPNIFMQELQITNTRNLL
EDIELIMPRVNLQKLTRRTVPLSEPVSVGVFTYTELEVLSGTVQLQAENP
SKSIVISIVKPQMDSKLQLRKRGTVRIVYPTAVHYSKPVAEEKIGGISET
IEQQATQAMAKLLQKLGSKPSNPGSLNSVNIYRQEHIDVWTDLWATGFTI
STSKAENSLNGDRINATMYAVLSQVRSFEFEEAGGSKKEDIAKALTYAEG
CYDSYHTLQAENLWREMSNLQQLNSLVTSWMLTLEKQGCHNLIRAGASGV
IQAMVLSFGSFRFSNQHLECNIHPKFLHRDFHFRRLNYGNKTHVNVTIIV
DDDNKAVINIALDRSDRSYYACDGGCLDEPVLLTQNRRQFPVKLTEPLTA
ILYITEDKQHMEELHHAIHVKEVVEAPAHEQHLIALHRHGHQLGGLPTLF
WVSVCAIIIVFHIFLCKLIIKEYCEPSDKLRYRYNKPASFLDH
BO04664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7289-PA | 637 | CG7289-PA | 1..637 | 1..637 | 3329 | 100 | Plus |
