Clone BO04666 Report

Search the DGRC for BO04666

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG8408-RA
Protein status:BO04666.pep: validated full length
Sequenced Size:994

Clone Sequence Records

BO04666.3prime Sequence

862 bp (861 high quality bases) assembled on 2005-12-01

> BO04666.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCTTCTTGTGCTTGAACTTGTTCTTGA
GTAGACCGGGCAGCAAGGATGCACAGGCGCAGGCCATCAGGATGCCCATT
GAGGTCCAGGAGAAGGCCTCGCTCGAACTAGTCATCTTCTGGAGCGTCTT
GCCCGCCTGGATGGCGATCACCGAGGGCGGTGCCACGCCGCAGAAGGTGC
CCAATGCGAAGATGTGCAGCGGCACACCGATGACTGGCGATGCCAGGTTG
ATGAACCAGTTAGGCAGGATCGGTGTCATGCGCAGGAATAGCATATAGTT
GAACAAACTGTCCCGGTACTCCTCGACATGCTTCGACCACTCGCTGGTCT
TCTTCGGCCAGAAGTGACGAATCAGACGACGTCCGACCAGATTGGAAAGT
GTATAGCATAGGGTAGCGCCCAGCGCCGAACAGAAACATATGAGGAACAG
GGCGATCGGGAACTTGTACAGGAATCCCAGCAGAATCGAGAGGAACAGCG
ATCCGGGAATGGCGAATGTTTGCAGGAATACGTAGGCGACCACGACGCCA
AACATCACTTCGAAGTAGTACATGTCCTTGTAGCGATCAAGGACCTTGGC
TAGCATCTTAGCATCTTGGATATCACGCGGAATTTTCAAGTGTTGTTTCT
CCGACGCGTTGAGCTCGGGGAATATGGCGTACACATAGCACATGGTGACC
AAGCTGGCCACAAAAATGCCCGCTACGATGACCAGGGACTTCTTGGTGGC
CTTCTTCTCGTCTGCGGACATGGCCTGCTTTTGCGGAGTGGCCTGTTGTT
GTTGCTGCTGCTGCTGTTGTTGCTGTGGATTAAGATCTTGTTGCTCCTGT
GGCGGCACCTGT

BO04666.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8408-PA 963 CG8408-RA 117..960 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 562..1405 862..19 4220 100 Minus
stas-RB 2163 CG8408-RB 562..897 862..527 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623698..17624205 19..526 2540 100 Plus
X 23542271 X 17626938..17627146 654..862 1045 100 Plus
X 23542271 X 17625530..17625658 527..655 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:20:12 has no hits.

BO04666.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:57 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 117..963 15..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:17 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 117..963 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:29 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 562..1411 12..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:00:22 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 562..1411 12..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:00:22 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17623692..17624205 12..526 99 <- Plus
X 17625530..17625658 527..655 100 <- Plus
X 17626940..17627146 656..862 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:29 Download gff for BO04666.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517725..17518238 12..526 99 <- Plus
arm_X 17519563..17519691 527..655 100 <- Plus
arm_X 17520973..17521179 656..862 100   Plus

BO04666.5prime Sequence

947 bp (844 high quality bases) assembled on 2005-11-29

> BO04666.5prime
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCA

BO04666.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8408-PA 963 CG8408-RA 1..931 17..947 4655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 446..1376 17..947 4655 100 Plus
stas-RB 2163 CG8408-RB 446..897 17..468 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623727..17624205 947..469 2395 100 Minus
X 23542271 X 17626938..17627241 341..38 1520 100 Minus
X 23542271 X 17625530..17625658 468..340 645 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:58:34 has no hits.

BO04666.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:58 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 1..930 17..946 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:18 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 1..930 17..946 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:06 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 439..1375 10..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:08 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 439..1375 10..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:08 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17623728..17624205 469..946 100 <- Minus
X 17625530..17625658 340..468 100 <- Minus
X 17626940..17627240 39..339 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:06 Download gff for BO04666.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517761..17518238 469..946 100 <- Minus
arm_X 17519563..17519691 340..468 100 <- Minus
arm_X 17520973..17521273 39..339 100 <- Minus

BO04666.complete Sequence

994 bp (994 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629834

> BO04666.complete
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCAAGA
ACAAGTTCAAGCACAAGAAGGAGGCGGCAAGCTTTCTAGACCAT

BO04666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 963 CG8408-PA 1..960 17..976 4800 100 Plus
stas-RB 525 CG8408-PB 1..452 17..468 2260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 446..1405 17..976 4800 100 Plus
stas-RB 2163 CG8408-RB 446..897 17..468 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623698..17624205 976..469 2540 100 Minus
X 23542271 X 17626938..17627241 341..38 1520 100 Minus
X 23542271 X 17625530..17625658 468..340 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:22 has no hits.

BO04666.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:00 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..963 17..980 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:43 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 440..1412 10..983 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:06 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 446..1405 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:00 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 440..1412 10..983 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:17 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 446..1405 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:17 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
X 17623696..17624205 469..978 99 <- Minus
X 17625530..17625658 340..468 100 <- Minus
X 17626940..17627240 39..339 100 <- Minus
X 17627429..17627450 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:06 Download gff for BO04666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517729..17518238 469..978 99 <- Minus
arm_X 17519563..17519691 340..468 100 <- Minus
arm_X 17520973..17521273 39..339 100 <- Minus
arm_X 17521462..17521483 17..38 100   Minus

BO04666.pep Sequence

Translation from 16 to 994

> BO04666.pep
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEAASFLDH

BO04666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
stas-PA 320 CG8408-PA 1..320 1..320 1657 100 Plus
stas-PB 174 CG8408-PB 1..150 1..150 761 100 Plus