Clone Sequence Records
BO04666.3prime Sequence
862 bp (861 high quality bases) assembled on 2005-12-01
> BO04666.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCTTCTTGTGCTTGAACTTGTTCTTGA
GTAGACCGGGCAGCAAGGATGCACAGGCGCAGGCCATCAGGATGCCCATT
GAGGTCCAGGAGAAGGCCTCGCTCGAACTAGTCATCTTCTGGAGCGTCTT
GCCCGCCTGGATGGCGATCACCGAGGGCGGTGCCACGCCGCAGAAGGTGC
CCAATGCGAAGATGTGCAGCGGCACACCGATGACTGGCGATGCCAGGTTG
ATGAACCAGTTAGGCAGGATCGGTGTCATGCGCAGGAATAGCATATAGTT
GAACAAACTGTCCCGGTACTCCTCGACATGCTTCGACCACTCGCTGGTCT
TCTTCGGCCAGAAGTGACGAATCAGACGACGTCCGACCAGATTGGAAAGT
GTATAGCATAGGGTAGCGCCCAGCGCCGAACAGAAACATATGAGGAACAG
GGCGATCGGGAACTTGTACAGGAATCCCAGCAGAATCGAGAGGAACAGCG
ATCCGGGAATGGCGAATGTTTGCAGGAATACGTAGGCGACCACGACGCCA
AACATCACTTCGAAGTAGTACATGTCCTTGTAGCGATCAAGGACCTTGGC
TAGCATCTTAGCATCTTGGATATCACGCGGAATTTTCAAGTGTTGTTTCT
CCGACGCGTTGAGCTCGGGGAATATGGCGTACACATAGCACATGGTGACC
AAGCTGGCCACAAAAATGCCCGCTACGATGACCAGGGACTTCTTGGTGGC
CTTCTTCTCGTCTGCGGACATGGCCTGCTTTTGCGGAGTGGCCTGTTGTT
GTTGCTGCTGCTGCTGTTGTTGCTGTGGATTAAGATCTTGTTGCTCCTGT
GGCGGCACCTGT
BO04666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8408-PA | 963 | CG8408-RA | 117..960 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 562..1405 | 862..19 | 4220 | 100 | Minus |
stas-RB | 2163 | CG8408-RB | 562..897 | 862..527 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623698..17624205 | 19..526 | 2540 | 100 | Plus |
X | 23542271 | X | 17626938..17627146 | 654..862 | 1045 | 100 | Plus |
X | 23542271 | X | 17625530..17625658 | 527..655 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:20:12 has no hits.
BO04666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:57 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 117..963 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:17 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 117..963 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:02:29 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 562..1411 | 12..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:00:22 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 562..1411 | 12..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:00:22 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17623692..17624205 | 12..526 | 99 | <- | Plus |
X | 17625530..17625658 | 527..655 | 100 | <- | Plus |
X | 17626940..17627146 | 656..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:02:29 Download gff for
BO04666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517725..17518238 | 12..526 | 99 | <- | Plus |
arm_X | 17519563..17519691 | 527..655 | 100 | <- | Plus |
arm_X | 17520973..17521179 | 656..862 | 100 | | Plus |
BO04666.5prime Sequence
947 bp (844 high quality bases) assembled on 2005-11-29
> BO04666.5prime
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCA
BO04666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8408-PA | 963 | CG8408-RA | 1..931 | 17..947 | 4655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 446..1376 | 17..947 | 4655 | 100 | Plus |
stas-RB | 2163 | CG8408-RB | 446..897 | 17..468 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623727..17624205 | 947..469 | 2395 | 100 | Minus |
X | 23542271 | X | 17626938..17627241 | 341..38 | 1520 | 100 | Minus |
X | 23542271 | X | 17625530..17625658 | 468..340 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:58:34 has no hits.
BO04666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:58 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:18 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 1..930 | 17..946 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:06 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 439..1375 | 10..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:08 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 439..1375 | 10..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:08 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17623728..17624205 | 469..946 | 100 | <- | Minus |
X | 17625530..17625658 | 340..468 | 100 | <- | Minus |
X | 17626940..17627240 | 39..339 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:06 Download gff for
BO04666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517761..17518238 | 469..946 | 100 | <- | Minus |
arm_X | 17519563..17519691 | 340..468 | 100 | <- | Minus |
arm_X | 17520973..17521273 | 39..339 | 100 | <- | Minus |
BO04666.complete Sequence
994 bp (994 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629834
> BO04666.complete
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCAAGA
ACAAGTTCAAGCACAAGAAGGAGGCGGCAAGCTTTCTAGACCAT
BO04666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 963 | CG8408-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
stas-RB | 525 | CG8408-PB | 1..452 | 17..468 | 2260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 446..1405 | 17..976 | 4800 | 100 | Plus |
stas-RB | 2163 | CG8408-RB | 446..897 | 17..468 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623698..17624205 | 976..469 | 2540 | 100 | Minus |
X | 23542271 | X | 17626938..17627241 | 341..38 | 1520 | 100 | Minus |
X | 23542271 | X | 17625530..17625658 | 468..340 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:22 has no hits.
BO04666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:00 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-RA | 1..963 | 17..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:43 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-RA | 440..1412 | 10..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:06 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 446..1405 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:00 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-RA | 440..1412 | 10..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:17 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 446..1405 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:17 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17623696..17624205 | 469..978 | 99 | <- | Minus |
X | 17625530..17625658 | 340..468 | 100 | <- | Minus |
X | 17626940..17627240 | 39..339 | 100 | <- | Minus |
X | 17627429..17627450 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:06 Download gff for
BO04666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517729..17518238 | 469..978 | 99 | <- | Minus |
arm_X | 17519563..17519691 | 340..468 | 100 | <- | Minus |
arm_X | 17520973..17521273 | 39..339 | 100 | <- | Minus |
arm_X | 17521462..17521483 | 17..38 | 100 | | Minus |
BO04666.pep Sequence
Translation from 16 to 994
> BO04666.pep
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEAASFLDH
BO04666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-PA | 320 | CG8408-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
stas-PB | 174 | CG8408-PB | 1..150 | 1..150 | 761 | 100 | Plus |