Clone Sequence Records
BO04668.3prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-01
> BO04668.3prime
ATGGTCTAGAAAGCTTGCAACCTCGGCCTTCTCAGCAGCCTCCTCCTTGA
CATCCACATCGCCATCGCCGGCCTCCGTTTTCTTATCCTCCGCCTCCGTT
TCCGCCTCCTCCTTCTTGGCATCGCCGTTCTCCTGCTTCAGTTCGATTTG
GGCGGTACTAACTGCCGTGGTGTCGGCTGGAGCCAGCTTGAGGAACACCT
CCAGGGTATCGATCTCGTTGGCCATGTCAAAGGCGTCGTAATCACCGCAG
TACTCGTCGTCGTTGAACAGCTGCGGAGGAAGCGGATGACGGGGCTCTGG
ATCGCTGACCGTTCCACCGTTGCTTGTCGATTTGTTTTGCATCAGCTCCT
TCTCGGATTCCTTGCCGGGCTCCGTGATGTCCACCGTGTCGTACTTGATG
TTCTTGCTGTCCAGGATCATCAGAACGCGCTGCTGGCGCTTCTTCACCTC
CTTATTGCCGGACATGCCGCTGACGTAGACTTTCAAGACCATGTCGACTG
ATAACT
BO04668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8582-PA | 477 | Sh3beta-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
CG8582-PB | 477 | Sh3beta-RB | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..800 | 492..19 | 2370 | 100 | Minus |
Sh3beta-RA | 1419 | CG8582-RA | 231..704 | 492..19 | 2370 | 100 | Minus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 492..22 | 2355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367556..7367986 | 19..449 | 2155 | 100 | Plus |
3L | 28110227 | 3L | 7368886..7368934 | 444..492 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:38:30 has no hits.
BO04668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:59 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 16..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:19 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 16..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:52 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 11..502 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:00 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 11..502 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:00 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7367549..7367984 | 11..447 | 99 | <- | Plus |
3L | 7368890..7368944 | 448..502 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:52 Download gff for
BO04668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360649..7361084 | 11..447 | 99 | <- | Plus |
arm_3L | 7361990..7362044 | 448..502 | 92 | | Plus |
BO04668.5prime Sequence
506 bp (505 high quality bases) assembled on 2005-12-01
> BO04668.5prime
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTGCAAGCTTTC
TAGACC
BO04668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8582-PA | 477 | Sh3beta-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
CG8582-PB | 477 | Sh3beta-RB | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..800 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RA | 1419 | CG8582-RA | 231..704 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367556..7367986 | 490..60 | 2155 | 100 | Minus |
3L | 28110227 | 3L | 7368886..7368934 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:02:47 has no hits.
BO04668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:00 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:21 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8582-PB | 1..477 | 17..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:58 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 7..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:49 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 221..711 | 7..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:49 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7367549..7367984 | 62..498 | 99 | <- | Minus |
3L | 7368890..7368944 | 7..61 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:58 Download gff for
BO04668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360649..7361084 | 62..498 | 99 | <- | Minus |
arm_3L | 7361990..7362044 | 7..61 | 92 | | Minus |
BO04668.complete Sequence
508 bp (508 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629835
> BO04668.complete
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTGCAAGCTTTC
TAGACCAT
BO04668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 477 | CG8582-PB | 1..474 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RA | 477 | CG8582-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RE | 1458 | CG8582-PE | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-RB | 1515 | CG8582-RB | 327..800 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RA | 1419 | CG8582-RA | 231..704 | 17..490 | 2370 | 100 | Plus |
Sh3beta-RE | 2338 | CG8582-RE | 327..797 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7367556..7367986 | 490..60 | 2155 | 100 | Minus |
3L | 28110227 | 3L | 7368886..7368934 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:19:39 has no hits.
BO04668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:50 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 1..477 | 17..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:35 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 274..764 | 7..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:58 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 231..704 | 17..492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:50 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RB | 274..764 | 7..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:00 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sh3beta-RA | 231..704 | 17..492 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:00 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7368890..7368934 | 17..61 | 100 | | Minus |
3L | 7367553..7367984 | 62..492 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:58 Download gff for
BO04668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7360653..7361084 | 62..492 | 99 | <- | Minus |
arm_3L | 7361990..7362034 | 17..61 | 100 | | Minus |
BO04668.pep Sequence
Translation from 16 to 508
> BO04668.pep
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEVASFLDH
BO04668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sh3beta-PB | 158 | CG8582-PB | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PA | 158 | CG8582-PA | 1..158 | 1..158 | 806 | 100 | Plus |
Sh3beta-PD | 216 | CG8582-PD | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 1..157 | 1..157 | 802 | 100 | Plus |
Sh3beta-PC | 146 | CG8582-PC | 3..146 | 15..158 | 733 | 99.3 | Plus |