Clone BO04668 Report

Search the DGRC for BO04668

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptSh3beta-RA
Protein status:BO04668.pep: validated full length
Sequenced Size:508

Clone Sequence Records

BO04668.3prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-01

> BO04668.3prime
ATGGTCTAGAAAGCTTGCAACCTCGGCCTTCTCAGCAGCCTCCTCCTTGA
CATCCACATCGCCATCGCCGGCCTCCGTTTTCTTATCCTCCGCCTCCGTT
TCCGCCTCCTCCTTCTTGGCATCGCCGTTCTCCTGCTTCAGTTCGATTTG
GGCGGTACTAACTGCCGTGGTGTCGGCTGGAGCCAGCTTGAGGAACACCT
CCAGGGTATCGATCTCGTTGGCCATGTCAAAGGCGTCGTAATCACCGCAG
TACTCGTCGTCGTTGAACAGCTGCGGAGGAAGCGGATGACGGGGCTCTGG
ATCGCTGACCGTTCCACCGTTGCTTGTCGATTTGTTTTGCATCAGCTCCT
TCTCGGATTCCTTGCCGGGCTCCGTGATGTCCACCGTGTCGTACTTGATG
TTCTTGCTGTCCAGGATCATCAGAACGCGCTGCTGGCGCTTCTTCACCTC
CTTATTGCCGGACATGCCGCTGACGTAGACTTTCAAGACCATGTCGACTG
ATAACT

BO04668.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8582-PA 477 Sh3beta-RA 1..474 492..19 2370 100 Minus
CG8582-PB 477 Sh3beta-RB 1..474 492..19 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..800 492..19 2370 100 Minus
Sh3beta-RA 1419 CG8582-RA 231..704 492..19 2370 100 Minus
Sh3beta-RE 2338 CG8582-RE 327..797 492..22 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367556..7367986 19..449 2155 100 Plus
3L 28110227 3L 7368886..7368934 444..492 245 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:38:30 has no hits.

BO04668.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:07:59 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 16..492 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:19 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 16..492 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:52 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 11..502 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:00 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 11..502 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:00 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7367549..7367984 11..447 99 <- Plus
3L 7368890..7368944 448..502 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:52 Download gff for BO04668.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360649..7361084 11..447 99 <- Plus
arm_3L 7361990..7362044 448..502 92   Plus

BO04668.5prime Sequence

506 bp (505 high quality bases) assembled on 2005-12-01

> BO04668.5prime
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTGCAAGCTTTC
TAGACC

BO04668.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8582-PA 477 Sh3beta-RA 1..474 17..490 2370 100 Plus
CG8582-PB 477 Sh3beta-RB 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..800 17..490 2370 100 Plus
Sh3beta-RA 1419 CG8582-RA 231..704 17..490 2370 100 Plus
Sh3beta-RE 2338 CG8582-RE 327..797 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367556..7367986 490..60 2155 100 Minus
3L 28110227 3L 7368886..7368934 65..17 245 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:02:47 has no hits.

BO04668.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:00 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:21 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8582-PB 1..477 17..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:58 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 7..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:49 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 221..711 7..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:49 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7367549..7367984 62..498 99 <- Minus
3L 7368890..7368944 7..61 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:58 Download gff for BO04668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360649..7361084 62..498 99 <- Minus
arm_3L 7361990..7362044 7..61 92   Minus

BO04668.complete Sequence

508 bp (508 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629835

> BO04668.complete
GAAGTTATCAGTCGACATGGTCTTGAAAGTCTACGTCAGCGGCATGTCCG
GCAATAAGGAGGTGAAGAAGCGCCAGCAGCGCGTTCTGATGATCCTGGAC
AGCAAGAACATCAAGTACGACACGGTGGACATCACGGAGCCCGGCAAGGA
ATCCGAGAAGGAGCTGATGCAAAACAAATCGACAAGCAACGGTGGAACGG
TCAGCGATCCAGAGCCCCGTCATCCGCTTCCTCCGCAGCTGTTCAACGAC
GACGAGTACTGCGGTGATTACGACGCCTTTGACATGGCCAACGAGATCGA
TACCCTGGAGGTGTTCCTCAAGCTGGCTCCAGCCGACACCACGGCAGTTA
GTACCGCCCAAATCGAACTGAAGCAGGAGAACGGCGATGCCAAGAAGGAG
GAGGCGGAAACGGAGGCGGAGGATAAGAAAACGGAGGCCGGCGATGGCGA
TGTGGATGTCAAGGAGGAGGCTGCTGAGAAGGCCGAGGTTGCAAGCTTTC
TAGACCAT

BO04668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 477 CG8582-PB 1..474 17..490 2370 100 Plus
Sh3beta-RA 477 CG8582-PA 1..474 17..490 2370 100 Plus
Sh3beta-RE 1458 CG8582-PE 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-RB 1515 CG8582-RB 327..800 17..490 2370 100 Plus
Sh3beta-RA 1419 CG8582-RA 231..704 17..490 2370 100 Plus
Sh3beta-RE 2338 CG8582-RE 327..797 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7367556..7367986 490..60 2155 100 Minus
3L 28110227 3L 7368886..7368934 65..17 245 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:19:39 has no hits.

BO04668.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:50 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 1..477 17..493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:35 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 274..764 7..498 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:58 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 231..704 17..492 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:50 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RB 274..764 7..498 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:00 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
Sh3beta-RA 231..704 17..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:00 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7368890..7368934 17..61 100   Minus
3L 7367553..7367984 62..492 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:58 Download gff for BO04668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7360653..7361084 62..492 99 <- Minus
arm_3L 7361990..7362034 17..61 100   Minus

BO04668.pep Sequence

Translation from 16 to 508

> BO04668.pep
MVLKVYVSGMSGNKEVKKRQQRVLMILDSKNIKYDTVDITEPGKESEKEL
MQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVF
LKLAPADTTAVSTAQIELKQENGDAKKEEAETEAEDKKTEAGDGDVDVKE
EAAEKAEVASFLDH

BO04668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sh3beta-PB 158 CG8582-PB 1..158 1..158 806 100 Plus
Sh3beta-PA 158 CG8582-PA 1..158 1..158 806 100 Plus
Sh3beta-PD 216 CG8582-PD 1..157 1..157 802 100 Plus
Sh3beta-PE 485 CG8582-PE 1..157 1..157 802 100 Plus
Sh3beta-PC 146 CG8582-PC 3..146 15..158 733 99.3 Plus