Clone BO04671 Report

Search the DGRC for BO04671

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG4511-RA
Protein status:BO04671.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO04671.3prime Sequence

680 bp (679 high quality bases) assembled on 2005-12-01

> BO04671.3prime
ATGGTCTAGAAAGCTTGCGTCATCCAGATCTATATCGGAGTCATCCGAGT
CGTAGCCTCCACGTATTGTCTTCTGTGGGCGGTTGATGAATGGTTTGCGT
TTCACATCTGGTGGCTGCATCAGATCGCCCTTGTAGTCAATGGCCCCCGA
GTGGGCGATGCGCCACTCCAGCATTTCGGTGGCGAAGTCGTCGCAGTTGC
CCAGATCGGTGAATCCGACAATGAAGTCCTTGGTCTTGCTGTCCTTCACC
AGGGCGATGGTGGGTATCACCTTGATGCGCAGTCGCTGGGTGAGGAATGG
AGTCTTTTCGGCATTCACCTTGCAAAACTTGGCCTCCACGTGCTTGGCCG
CGAGGATCTTCAGGTGCATGTCCACGATCTTGCAGCGCTCGGTGCTGTCG
CGGTAAAAGTGGCAAACAATGTTGGGCGACTTTTTCGACATCTCGAAGAA
CTCTTTTTCGTCGGCCAGCTCGGTGTAGGTGCCATGACCGTTTCTGAGCC
ACTCCTGCTTCTTGTTGTTCAGGTCCTTCATTTCGCGGAGCCGCTGCTCC
CGCAGGACCTTTAGGTCATCCGAATCGAGGTTGTCCAGGCGGTCGAGCTG
CTGGTCCAGCTGCTGCTCGATGGTCTTGGCGGCCGTGAACAGTTGGTTCT
CCAGGATGTTGGCCATGTCGACTGATAACT

BO04671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PA 651 CG4511-RA 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..759 668..19 3250 100 Minus
CG4511-RA 1452 CG4511-RA 155..804 668..19 3250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855764 489..19 2355 100 Minus
3R 32079331 3R 10854854..10855033 668..489 900 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:38:38 has no hits.

BO04671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:02 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:23 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:27 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 12..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:20 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 12..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:20 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10854854..10855032 490..668 100 -> Minus
3R 10855294..10855769 12..489 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:27 Download gff for BO04671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680576..6680754 490..668 100 -> Minus
arm_3R 6681016..6681491 12..489 99   Minus

BO04671.5prime Sequence

680 bp (679 high quality bases) assembled on 2005-11-29

> BO04671.5prime
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACGCAAGCTTTCTAGACC

BO04671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PA 651 CG4511-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..759 15..664 3250 100 Plus
CG4511-RA 1452 CG4511-RA 155..804 15..664 3250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855764 194..664 2355 100 Plus
3R 32079331 3R 10854854..10855033 15..194 900 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:59:56 has no hits.

BO04671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:03 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:24 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:09 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 15..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:37 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 155..809 15..671 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:37 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10854854..10855032 15..193 100 -> Plus
3R 10855294..10855769 194..671 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:09 Download gff for BO04671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680576..6680754 15..193 100 -> Plus
arm_3R 6681016..6681491 194..671 99   Plus

BO04671.complete Sequence

682 bp (682 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629836

> BO04671.complete
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACGCAAGCTTTCTAGACCAT

BO04671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 651 CG4511-PB 1..648 17..664 3240 100 Plus
CG4511-RA 651 CG4511-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RB 1407 CG4511-RB 110..759 15..664 3250 100 Plus
CG4511-RA 1452 CG4511-RA 155..804 15..664 3250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10855764 194..664 2355 100 Plus
3R 32079331 3R 10854854..10855033 15..194 900 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:10:31 has no hits.

BO04671.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:11 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:51 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 153..807 15..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:18 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 157..804 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:11 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 153..807 15..671 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:25 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 157..804 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:25 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10854856..10855032 17..193 100 -> Plus
3R 10855294..10855764 194..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:18 Download gff for BO04671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680578..6680754 17..193 100 -> Plus
arm_3R 6681016..6681486 194..666 99   Plus

BO04671.pep Sequence

Translation from 16 to 682

> BO04671.pep
MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLN
NKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDM
HLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIV
GFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKT
IRGGYDSDDSDIDLDDASFLDH

BO04671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PB 216 CG4511-PB 1..216 1..216 1134 100 Plus
CG4511-PA 216 CG4511-PA 1..216 1..216 1134 100 Plus