Clone Sequence Records
BO04671.3prime Sequence
680 bp (679 high quality bases) assembled on 2005-12-01
> BO04671.3prime
ATGGTCTAGAAAGCTTGCGTCATCCAGATCTATATCGGAGTCATCCGAGT
CGTAGCCTCCACGTATTGTCTTCTGTGGGCGGTTGATGAATGGTTTGCGT
TTCACATCTGGTGGCTGCATCAGATCGCCCTTGTAGTCAATGGCCCCCGA
GTGGGCGATGCGCCACTCCAGCATTTCGGTGGCGAAGTCGTCGCAGTTGC
CCAGATCGGTGAATCCGACAATGAAGTCCTTGGTCTTGCTGTCCTTCACC
AGGGCGATGGTGGGTATCACCTTGATGCGCAGTCGCTGGGTGAGGAATGG
AGTCTTTTCGGCATTCACCTTGCAAAACTTGGCCTCCACGTGCTTGGCCG
CGAGGATCTTCAGGTGCATGTCCACGATCTTGCAGCGCTCGGTGCTGTCG
CGGTAAAAGTGGCAAACAATGTTGGGCGACTTTTTCGACATCTCGAAGAA
CTCTTTTTCGTCGGCCAGCTCGGTGTAGGTGCCATGACCGTTTCTGAGCC
ACTCCTGCTTCTTGTTGTTCAGGTCCTTCATTTCGCGGAGCCGCTGCTCC
CGCAGGACCTTTAGGTCATCCGAATCGAGGTTGTCCAGGCGGTCGAGCTG
CTGGTCCAGCTGCTGCTCGATGGTCTTGGCGGCCGTGAACAGTTGGTTCT
CCAGGATGTTGGCCATGTCGACTGATAACT
BO04671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-PA | 651 | CG4511-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-RB | 1407 | CG4511-RB | 110..759 | 668..19 | 3250 | 100 | Minus |
CG4511-RA | 1452 | CG4511-RA | 155..804 | 668..19 | 3250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10855294..10855764 | 489..19 | 2355 | 100 | Minus |
3R | 32079331 | 3R | 10854854..10855033 | 668..489 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:38:38 has no hits.
BO04671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:02 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:23 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:27 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 155..809 | 12..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:20 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 155..809 | 12..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:20 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10854854..10855032 | 490..668 | 100 | -> | Minus |
3R | 10855294..10855769 | 12..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:27 Download gff for
BO04671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6680576..6680754 | 490..668 | 100 | -> | Minus |
arm_3R | 6681016..6681491 | 12..489 | 99 | | Minus |
BO04671.5prime Sequence
680 bp (679 high quality bases) assembled on 2005-11-29
> BO04671.5prime
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACGCAAGCTTTCTAGACC
BO04671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-PA | 651 | CG4511-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-RB | 1407 | CG4511-RB | 110..759 | 15..664 | 3250 | 100 | Plus |
CG4511-RA | 1452 | CG4511-RA | 155..804 | 15..664 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10855294..10855764 | 194..664 | 2355 | 100 | Plus |
3R | 32079331 | 3R | 10854854..10855033 | 15..194 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:59:56 has no hits.
BO04671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:03 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:24 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:09 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 155..809 | 15..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:37 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 155..809 | 15..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:37 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10854854..10855032 | 15..193 | 100 | -> | Plus |
3R | 10855294..10855769 | 194..671 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:09 Download gff for
BO04671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6680576..6680754 | 15..193 | 100 | -> | Plus |
arm_3R | 6681016..6681491 | 194..671 | 99 | | Plus |
BO04671.complete Sequence
682 bp (682 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629836
> BO04671.complete
GAAGTTATCAGTCGACATGGCCAACATCCTGGAGAACCAACTGTTCACGG
CCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCGCCTGGAC
AACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGCTCCGCGA
AATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAACGGTCATG
GCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGATGTCGAAA
AAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCGAGCGCTG
CAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCACGTGGAGG
CCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCACCCAGCGA
CTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACAGCAAGAC
CAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGACGACTTCG
CCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCATTGACTAC
AAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCATTCATCAA
CCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGACTCCGATA
TAGATCTGGATGACGCAAGCTTTCTAGACCAT
BO04671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-RB | 651 | CG4511-PB | 1..648 | 17..664 | 3240 | 100 | Plus |
CG4511-RA | 651 | CG4511-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-RB | 1407 | CG4511-RB | 110..759 | 15..664 | 3250 | 100 | Plus |
CG4511-RA | 1452 | CG4511-RA | 155..804 | 15..664 | 3250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10855294..10855764 | 194..664 | 2355 | 100 | Plus |
3R | 32079331 | 3R | 10854854..10855033 | 15..194 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:31 has no hits.
BO04671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:54:11 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:51 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 153..807 | 15..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:18 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 157..804 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:54:11 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 153..807 | 15..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:25 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4511-RA | 157..804 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:25 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10854856..10855032 | 17..193 | 100 | -> | Plus |
3R | 10855294..10855764 | 194..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:18 Download gff for
BO04671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6680578..6680754 | 17..193 | 100 | -> | Plus |
arm_3R | 6681016..6681486 | 194..666 | 99 | | Plus |
BO04671.pep Sequence
Translation from 16 to 682
> BO04671.pep
MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLN
NKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDM
HLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIV
GFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKT
IRGGYDSDDSDIDLDDASFLDH
BO04671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4511-PB | 216 | CG4511-PB | 1..216 | 1..216 | 1134 | 100 | Plus |
CG4511-PA | 216 | CG4511-PA | 1..216 | 1..216 | 1134 | 100 | Plus |