Clone Sequence Records
BO04677.3prime Sequence
894 bp (827 high quality bases) assembled on 2005-12-01
> BO04677.3prime
ATGGTCTAGAAAGCTTGCCAACTTGGATTTTTGCTTCTTAAGCATTTCCC
GCAGAATGCGACGCAGAATCTTGCCACTGGGGTTCTTTGGAATTTCGTCA
ACAAAGATCACGCCACCCCTTAGACGCTTGGCGGGCGAGGCGTTGTCGTT
GACAAACTGAATGACTTCGTTCTCGGTCAGTTGAACATTAGCCTGTTTGA
CCACAAATGCCAGCGGCAGCTCGCCAGCCTCCTCGTCTGGCTTTCCAATG
ACCGCCGCATCCTTAATCTTGTCGTTGGTGAGCAGCAGAGCCTCAATCTC
TGCCGGCGGCACCTGGTATCCCTTGTATTTGATCAGCTCCTTGATGCGGT
CCACGATGAAGAACTCAAAATCATCATCATAGTAGCCAATATCGCCAGTA
TGCAACCAACCGTCCTTGATGGCGGTCTGCGTGGACTTCGTATCTCCGAT
GTAGCCCTTCATGATGCCGTCGCCTTTAAAACAAAGCTCGCCGCGCTCGT
TGGCCCCCAATAGCTTGCCGGTGTCGGGATCGATCACCTTGGCATAGATT
CCCACCTTAAGAACGCCCACACTGCCTGGCTTGCAGAACTCATCGTTCTG
CACCAGAACACTCAGCGTTGATTCGCTGAGGCCGTATCCCTGTCGGATGA
ATGGCACTCCAATACGCTCCTTGATCTGATCCTCAGTTTCGCGACTGAGT
GGAGCTGCTCCACACAGCAGGACCATCAAAGAGGACAAATCGTACTTATC
CACGATGGGGTGTTTAGCCAAAAAGACCATCAGTGGTGGCACCATGAAGG
CCATCATCACGCGATACTTTTCAATGGCAGAAAGGAAGAGCTTTTCCTCG
AACTTGGGCAGGTATACCAATCGTGCGCCNACGCAGGCGGTGGT
BO04677.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-PA | 1635 | CG6178-RA | 757..1632 | 894..19 | 4361 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-RA | 2008 | CG6178-RA | 1021..1896 | 894..19 | 4369 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24153909..24154784 | 894..19 | 4369 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:30:46 has no hits.
BO04677.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:07 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-PA | 757..1635 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:31 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-PA | 757..1635 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:16 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 1021..1900 | 14..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:09:16 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 1021..1900 | 14..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:09:16 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24153909..24154788 | 14..894 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:16 Download gff for
BO04677.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19979631..19980510 | 14..894 | 99 | -> | Minus |
BO04677.5prime Sequence
911 bp (818 high quality bases) assembled on 2005-12-01
> BO04677.5prime
GAAGTTATCAGTCGACATGACCTCAAAGCTACTGCCCGGAAACATTGTGT
ACGGAGGTCCTGTGACTGAACGACAGGCCCAGGATAGCAGATCCTTGGGT
CAGTACATCCTCGACAAGTACAAGAGCTTTGGCGACCGGACGGTGCTGGT
GGATGCCGTCAATGGAGTGGAGTACTCTGCCAGTTTCATGCACAAGTCCA
TTGTACGGCTGGCATACATCCTTCAAAAACTGGGAGTCAAACAGAATGAC
GTCGTTGGTTTGTCTAGCGAAAACAGCGTCAACTTCGCCCTGGCCATGTT
CGCTGGTCTAGCAGTTGGGGCTACGGTTGCTCCCCTTAACGTAACATATT
CCGATCGTGAGGTGGACCACGCCATTAACTTGTCCAAGCCAAAGATCATA
TTCGCCTCTAAGATTACCATTGATCGTGTTGCCAAAGTGGCCAGCAAGAA
TAAGTTCGTCAAGGGCATCATTGCGCTCAGTGGAACTTCCAAGAAATTTA
AGAACATCTATGATCTTAAGGAGCTGATGGAGGACGAGAAGTTCAAGACA
CAGCCTGACTTCACGAGCCCTGCGGCCAATAAGGACGAGGACGTGTCTCT
TATTGTGTGCTCTTCTGGAACCACCGGACTTCCTAAAGGAGTGCAGCTGA
CCCAAATGAACCTGCTGGCCACTCTCGACTCACAAATCCAACCCACTGTC
ATTCCAATGGAGGAGGTCACTCTACTCACTGTCATTCCCTGGTTCCACGC
CTTCGGCTGTCTGACGCTTATCACCACCGCCTGCGTTGGCGCACGATTGG
TATACCTGCCCAAGTTCGAGGAAAAGCTCTTCCTTTCTGCCATTGAAAAG
TATCGCGTGATGATGGCCTTCATGGTGCCACCACTGATGGGTCTTTTTGG
CTAAACACCCC
BO04677.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-PA | 1635 | CG6178-RA | 1..874 | 17..890 | 4345 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-RA | 2008 | CG6178-RA | 265..1158 | 17..911 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24153097..24153767 | 17..687 | 3340 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24153824..24154046 | 688..911 | 1070 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:38:47 has no hits.
BO04677.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:08 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-PA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:32 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-PA | 1..894 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:30 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 257..1158 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:22 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 257..1158 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:22 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24153824..24154046 | 688..911 | 99 | | Plus |
| 3R | 24153091..24153767 | 9..687 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:30 Download gff for
BO04677.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19978813..19979489 | 9..687 | 99 | -> | Plus |
| arm_3R | 19979546..19979768 | 688..911 | 99 | | Plus |
BO04677.complete Sequence
1666 bp (1666 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629838
> BO04677.complete
GAAGTTATCAGTCGACATGACCTCAAAGCTACTGCCCGGAAACATTGTGT
ACGGAGGTCCTGTGACTGAACGACAGGCCCAGGATAGCAGATCCTTGGGT
CAGTACATCCTCGACAAGTACAAGAGCTTTGGCGACCGGACGGTGCTGGT
GGATGCCGTCAATGGAGTGGAGTACTCTGCCAGTTTCATGCACAAGTCCA
TTGTACGGCTGGCATACATCCTTCAAAAACTGGGAGTCAAACAGAATGAC
GTCGTTGGTTTGTCTAGCGAAAACAGCGTCAACTTCGCCCTGGCCATGTT
CGCTGGTCTAGCAGTTGGGGCTACGGTTGCTCCCCTTAACGTAACATATT
CCGATCGTGAGGTGGACCACGCCATTAACTTGTCCAAGCCAAAGATCATA
TTCGCCTCTAAGATTACCATTGATCGTGTTGCCAAAGTGGCCAGCAAGAA
TAAGTTCGTCAAGGGCATCATTGCGCTCAGTGGAACTTCCAAGAAATTTA
AGAACATCTATGATCTTAAGGAGCTGATGGAGGACGAGAAGTTCAAGACA
CAGCCTGACTTCACGAGCCCTGCGGCCAATAAGGACGAGGACGTGTCTCT
TATTGTGTGCTCTTCTGGAACCACCGGACTTCCTAAAGGAGTGCAGCTGA
CCCAAATGAACCTGCTGGCCACTCTCGACTCACAAATCCAACCCACTGTC
ATTCCAATGGAGGAGGTCACTCTACTCACTGTCATTCCCTGGTTCCACGC
CTTCGGCTGTCTGACGCTTATCACCACCGCCTGCGTTGGCGCACGATTGG
TATACCTGCCCAAGTTCGAGGAAAAGCTCTTCCTTTCTGCCATTGAAAAG
TATCGCGTGATGATGGCCTTCATGGTGCCACCACTGATGGTCTTTTTGGC
TAAACACCCCATCGTGGATAAGTACGATTTGTCCTCTTTGATGGTCCTGC
TGTGTGGAGCAGCTCCACTCAGTCGCGAAACTGAGGATCAGATCAAGGAG
CGTATTGGAGTGCCATTCATCCGACAGGGATACGGCCTCAGCGAATCAAC
GCTGAGTGTTCTGGTGCAGAACGATGAGTTCTGCAAGCCAGGCAGTGTGG
GCGTTCTTAAGGTGGGAATCTATGCCAAGGTGATCGATCCCGACACCGGC
AAGCTATTGGGGGCCAACGAGCGCGGCGAGCTTTGTTTTAAAGGCGACGG
CATCATGAAGGGCTACATCGGAGATACGAAGTCCACGCAGACCGCCATCA
AGGACGGTTGGTTGCATACTGGCGATATTGGCTACTATGATGATGATTTT
GAGTTCTTCATCGTGGACCGCATCAAGGAGCTGATCAAATACAAGGGATA
CCAGGTGCCGCCGGCAGAGATTGAGGCTCTGCTGCTCACCAACGACAAGA
TTAAGGATGCGGCGGTCATTGGAAAGCCAGACGAGGAGGCTGGCGAGCTG
CCGCTGGCATTTGTGGTCAAACAGGCTAATGTTCAACTGACCGAGAACGA
AGTCATTCAGTTTGTCAACGACAACGCCTCGCCCGCCAAGCGTCTAAGGG
GTGGCGTGATCTTTGTTGACGAAATTCCAAAGAACCCCAGTGGCAAGATT
CTGCGTCGCATTCTGCGGGAAATGCTTAAGAAGCAAAAATCCAAGTTGGC
AAGCTTTCTAGACCAT
BO04677.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-RA | 1635 | CG6178-PA | 1..1632 | 17..1648 | 8145 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-RA | 2008 | CG6178-RA | 265..1896 | 17..1648 | 8145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24153824..24154784 | 688..1648 | 4805 | 100 | Plus |
| 3R | 32079331 | 3R | 24153097..24153767 | 17..687 | 3340 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:27:35 has no hits.
BO04677.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:57 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 1..1635 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:56 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 290..1933 | 9..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:21 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 265..1896 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:57 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 290..1933 | 9..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:50 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6178-RA | 265..1896 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:50 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24153097..24153767 | 17..687 | 99 | -> | Plus |
| 3R | 24153824..24154784 | 688..1650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:21 Download gff for
BO04677.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19978819..19979489 | 17..687 | 99 | -> | Plus |
| arm_3R | 19979546..19980506 | 688..1650 | 99 | | Plus |
BO04677.pep Sequence
Translation from 16 to 1666
> BO04677.pep
MTSKLLPGNIVYGGPVTERQAQDSRSLGQYILDKYKSFGDRTVLVDAVNG
VEYSASFMHKSIVRLAYILQKLGVKQNDVVGLSSENSVNFALAMFAGLAV
GATVAPLNVTYSDREVDHAINLSKPKIIFASKITIDRVAKVASKNKFVKG
IIALSGTSKKFKNIYDLKELMEDEKFKTQPDFTSPAANKDEDVSLIVCSS
GTTGLPKGVQLTQMNLLATLDSQIQPTVIPMEEVTLLTVIPWFHAFGCLT
LITTACVGARLVYLPKFEEKLFLSAIEKYRVMMAFMVPPLMVFLAKHPIV
DKYDLSSLMVLLCGAAPLSRETEDQIKERIGVPFIRQGYGLSESTLSVLV
QNDEFCKPGSVGVLKVGIYAKVIDPDTGKLLGANERGELCFKGDGIMKGY
IGDTKSTQTAIKDGWLHTGDIGYYDDDFEFFIVDRIKELIKYKGYQVPPA
EIEALLLTNDKIKDAAVIGKPDEEAGELPLAFVVKQANVQLTENEVIQFV
NDNASPAKRLRGGVIFVDEIPKNPSGKILRRILREMLKKQKSKLASFLDH
BO04677.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6178-PA | 544 | CG6178-PA | 1..544 | 1..544 | 2756 | 100 | Plus |
| pdgy-PC | 597 | CG9009-PC | 77..593 | 27..535 | 705 | 32.3 | Plus |
| pdgy-PB | 597 | CG9009-PB | 77..593 | 27..535 | 705 | 32.3 | Plus |
| pdgy-PD | 597 | CG9009-PD | 77..593 | 27..535 | 705 | 32.3 | Plus |
| pdgy-PA | 597 | CG9009-PA | 77..593 | 27..535 | 705 | 32.3 | Plus |
