Clone BO04678 Report

Search the DGRC for BO04678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6073-RA
Protein status:BO04678.pep: validated full length
Sequenced Size:1141

Clone Sequence Records

BO04678.3prime Sequence

910 bp (857 high quality bases) assembled on 2005-12-01

> BO04678.3prime
ATGGTCTAGAAAGCTTGCATCAAGCAAACTCTTCACATAGGCGGCGTCCT
CCTGGACGAATTTTTCTGACTGCTCTGCAGGCACTTCCACTTCGGTTTTA
TAGTTGTCCAGGCCAATCTCTTCCTCTTTCTTGATCAGAATGTCCACCAC
GTTCTCGCAGGCCAGCAGACAGTCGCTGTCCTTGCCCACCTTGGCCTCCC
ACTTGTGGTACTCCCGCAGGATCTCATAGACGCCCCTGGAGCGCAGGATT
TCCCGGCTGCGACGTGTGGAGCACAGTTGCAGCAAACACTCCAGCAGCAT
TTTCCGCAAATCGGGATCCTCTTCGCGCGTTTTACTTTCAGGCAGGTACT
GCAGTTCGATGGGCAACAATTCATTGTCCTCGTCGCTGAACTCTTCTGGA
CCGCACAGTGGCTGCAGGATTGCCACCAGAATACTGCTCTGCTCGTTTAG
GATCACATCGTGGTAGACAGTGTCGAAGCAAACGTTCTTCAGAATGCCAA
TGGTGCCGCCACGCCGCACTACACTTCCCTCGAATGAGGCAAAGGGCAGT
AGTTTCTCCAGCAACTCGTATTTCCGATGGCAGCACAGTTCCCTGCCCCG
AGAAACCTGGGTCAGATTGCAGAAGATGGGCGCCAGATAATGCAGCTTGG
CCTTCTTTTTGTTGTAGTCCAATTGCGCGAAGGCCTTTGCCAAGCGGGGT
AGCGTGTGATCGTCTCTTTCTAGCGTGTCCAGGATCTCGTGGACCAGAGA
TTCCACTCGCGTTAGGTTGCTCAAGACCATGCTCCAGGGATCAGCCAGAT
CGGATTGCTCGTTGGTTATTTTCTTGGCAGCCACTTCTACGATGGCAAAT
GGCGGTTGCAATTGTTTCGCCAGTTGGAAAACTTTAATTGCTGCTTCCTC
TTCGGACGTT

BO04678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PA 1110 CG6073-RA 216..1107 910..19 4360 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 306..1197 910..19 4400 99.6 Minus
CG6073-RA 1564 CG6073-RA 306..1197 910..19 4400 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187771..26188275 349..853 2480 99.4 Plus
3R 32079331 3R 26187385..26187717 19..351 1650 99.7 Plus
3R 32079331 3R 26188332..26188389 853..910 290 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:38:55 has no hits.

BO04678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:09 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 216..1110 16..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:34 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 216..1110 16..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:33 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 306..1201 15..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:23 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 306..1201 15..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:23 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26187381..26187714 15..348 99 <- Plus
3R 26187771..26188274 349..852 99 <- Plus
3R 26188332..26188389 853..910 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:33 Download gff for BO04678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013103..22013436 15..348 99 <- Plus
arm_3R 22013493..22013996 349..852 99 <- Plus
arm_3R 22014054..22014111 853..910 100   Plus

BO04678.5prime Sequence

922 bp (759 high quality bases) assembled on 2005-11-29

> BO04678.5prime
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAACGCGCGAAGAAGATCCCGATTTGCGGAAATGCTGCTGGA
GTGTTTGCTGNCACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCGCT
CCAGGGGCGTCTATGAGATCCT

BO04678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PA 1110 CG6073-RA 1..795 17..811 3900 99.6 Plus
CG6073-PA 1110 CG6073-RA 824..908 838..922 381 97.6 Plus
CG6073-PA 1110 CG6073-RA 794..825 809..840 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 91..998 17..922 4404 99.1 Plus
CG6073-RA 1564 CG6073-RA 91..998 17..922 4404 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187771..26188275 793..289 2495 99.6 Minus
3R 32079331 3R 26188332..26188521 289..100 950 100 Minus
3R 32079331 3R 26187584..26187717 922..791 514 95.5 Minus
3R 32079331 3R 26188632..26188717 102..17 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:10:45 has no hits.

BO04678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:10 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 1..908 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:35 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 1..908 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:01 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..998 17..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:56 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..998 17..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:56 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26187584..26187714 794..922 95 <- Minus
3R 26187771..26188274 290..793 99 <- Minus
3R 26188332..26188519 102..289 100 <- Minus
3R 26188633..26188717 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:01 Download gff for BO04678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013306..22013436 794..922 95 <- Minus
arm_3R 22013493..22013996 290..793 99 <- Minus
arm_3R 22014054..22014241 102..289 100 <- Minus
arm_3R 22014355..22014439 17..101 100   Minus

BO04678.complete Sequence

1141 bp (1141 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629839

> BO04678.complete
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAAACGCGCGAAGAGGATCCCGATTTGCGGAAAATGCTGCTG
GAGTGTTTGCTGCAACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCG
CTCCAGGGGCGTCTATGAGATCCTGCGGGAGTACCACAAGTGGGAGGCCA
AGGTGGGCAAGGACAGCGACTGTCTGCTGGCCTGCGAGAACGTGGTGGAC
ATTCTGATCAAGAAAGAGGAAGAGATTGGCCTGGACAACTATAAAACCGA
AGTGGAAGTGCCTGCAGAGCAGTCAGAAAAATTCGTCCAGGAGGACGCCG
CCTATGTGAAGAGTTTGCTTGATGCAAGCTTTCTAGACCAT

BO04678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1110 CG6073-PB 1..1107 17..1123 5490 99.7 Plus
CG6073-RA 1110 CG6073-PA 1..1107 17..1123 5490 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 91..1197 17..1123 5490 99.7 Plus
CG6073-RA 1564 CG6073-RA 91..1197 17..1123 5490 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187771..26188275 793..289 2495 99.6 Minus
3R 32079331 3R 26187385..26187717 1123..791 1650 99.7 Minus
3R 32079331 3R 26188332..26188521 289..100 950 100 Minus
3R 32079331 3R 26188632..26188717 102..17 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:18:38 has no hits.

BO04678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:16 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 17..1126 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:05 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 88..1198 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:33 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..1197 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:16 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 88..1198 17..1127 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:19 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..1197 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:19 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26188332..26188519 102..289 100 <- Minus
3R 26188633..26188717 17..101 100   Minus
3R 26187382..26187714 794..1125 99 <- Minus
3R 26187771..26188274 290..793 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:33 Download gff for BO04678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013104..22013436 794..1125 99 <- Minus
arm_3R 22013493..22013996 290..793 99 <- Minus
arm_3R 22014054..22014241 102..289 100 <- Minus
arm_3R 22014355..22014439 17..101 100   Minus

BO04678.pep Sequence

Translation from 16 to 1141

> BO04678.pep
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLDASFLDH

BO04678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PB 369 CG6073-PB 1..369 1..369 1867 100 Plus
CG6073-PA 369 CG6073-PA 1..369 1..369 1867 100 Plus