Clone Sequence Records
BO04678.3prime Sequence
910 bp (857 high quality bases) assembled on 2005-12-01
> BO04678.3prime
ATGGTCTAGAAAGCTTGCATCAAGCAAACTCTTCACATAGGCGGCGTCCT
CCTGGACGAATTTTTCTGACTGCTCTGCAGGCACTTCCACTTCGGTTTTA
TAGTTGTCCAGGCCAATCTCTTCCTCTTTCTTGATCAGAATGTCCACCAC
GTTCTCGCAGGCCAGCAGACAGTCGCTGTCCTTGCCCACCTTGGCCTCCC
ACTTGTGGTACTCCCGCAGGATCTCATAGACGCCCCTGGAGCGCAGGATT
TCCCGGCTGCGACGTGTGGAGCACAGTTGCAGCAAACACTCCAGCAGCAT
TTTCCGCAAATCGGGATCCTCTTCGCGCGTTTTACTTTCAGGCAGGTACT
GCAGTTCGATGGGCAACAATTCATTGTCCTCGTCGCTGAACTCTTCTGGA
CCGCACAGTGGCTGCAGGATTGCCACCAGAATACTGCTCTGCTCGTTTAG
GATCACATCGTGGTAGACAGTGTCGAAGCAAACGTTCTTCAGAATGCCAA
TGGTGCCGCCACGCCGCACTACACTTCCCTCGAATGAGGCAAAGGGCAGT
AGTTTCTCCAGCAACTCGTATTTCCGATGGCAGCACAGTTCCCTGCCCCG
AGAAACCTGGGTCAGATTGCAGAAGATGGGCGCCAGATAATGCAGCTTGG
CCTTCTTTTTGTTGTAGTCCAATTGCGCGAAGGCCTTTGCCAAGCGGGGT
AGCGTGTGATCGTCTCTTTCTAGCGTGTCCAGGATCTCGTGGACCAGAGA
TTCCACTCGCGTTAGGTTGCTCAAGACCATGCTCCAGGGATCAGCCAGAT
CGGATTGCTCGTTGGTTATTTTCTTGGCAGCCACTTCTACGATGGCAAAT
GGCGGTTGCAATTGTTTCGCCAGTTGGAAAACTTTAATTGCTGCTTCCTC
TTCGGACGTT
BO04678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PA | 1110 | CG6073-RA | 216..1107 | 910..19 | 4360 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 306..1197 | 910..19 | 4400 | 99.6 | Minus |
CG6073-RA | 1564 | CG6073-RA | 306..1197 | 910..19 | 4400 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187771..26188275 | 349..853 | 2480 | 99.4 | Plus |
3R | 32079331 | 3R | 26187385..26187717 | 19..351 | 1650 | 99.7 | Plus |
3R | 32079331 | 3R | 26188332..26188389 | 853..910 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:38:55 has no hits.
BO04678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:09 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 216..1110 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:34 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 216..1110 | 16..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:33 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 306..1201 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:23 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 306..1201 | 15..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:23 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26187381..26187714 | 15..348 | 99 | <- | Plus |
3R | 26187771..26188274 | 349..852 | 99 | <- | Plus |
3R | 26188332..26188389 | 853..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:33 Download gff for
BO04678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013103..22013436 | 15..348 | 99 | <- | Plus |
arm_3R | 22013493..22013996 | 349..852 | 99 | <- | Plus |
arm_3R | 22014054..22014111 | 853..910 | 100 | | Plus |
BO04678.5prime Sequence
922 bp (759 high quality bases) assembled on 2005-11-29
> BO04678.5prime
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAACGCGCGAAGAAGATCCCGATTTGCGGAAATGCTGCTGGA
GTGTTTGCTGNCACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCGCT
CCAGGGGCGTCTATGAGATCCT
BO04678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PA | 1110 | CG6073-RA | 1..795 | 17..811 | 3900 | 99.6 | Plus |
CG6073-PA | 1110 | CG6073-RA | 824..908 | 838..922 | 381 | 97.6 | Plus |
CG6073-PA | 1110 | CG6073-RA | 794..825 | 809..840 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 91..998 | 17..922 | 4404 | 99.1 | Plus |
CG6073-RA | 1564 | CG6073-RA | 91..998 | 17..922 | 4404 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187771..26188275 | 793..289 | 2495 | 99.6 | Minus |
3R | 32079331 | 3R | 26188332..26188521 | 289..100 | 950 | 100 | Minus |
3R | 32079331 | 3R | 26187584..26187717 | 922..791 | 514 | 95.5 | Minus |
3R | 32079331 | 3R | 26188632..26188717 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:10:45 has no hits.
BO04678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:10 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:35 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 1..908 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:01 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..998 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:10:56 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..998 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:10:56 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26187584..26187714 | 794..922 | 95 | <- | Minus |
3R | 26187771..26188274 | 290..793 | 99 | <- | Minus |
3R | 26188332..26188519 | 102..289 | 100 | <- | Minus |
3R | 26188633..26188717 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:01 Download gff for
BO04678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013306..22013436 | 794..922 | 95 | <- | Minus |
arm_3R | 22013493..22013996 | 290..793 | 99 | <- | Minus |
arm_3R | 22014054..22014241 | 102..289 | 100 | <- | Minus |
arm_3R | 22014355..22014439 | 17..101 | 100 | | Minus |
BO04678.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629839
> BO04678.complete
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAAACGCGCGAAGAGGATCCCGATTTGCGGAAAATGCTGCTG
GAGTGTTTGCTGCAACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCG
CTCCAGGGGCGTCTATGAGATCCTGCGGGAGTACCACAAGTGGGAGGCCA
AGGTGGGCAAGGACAGCGACTGTCTGCTGGCCTGCGAGAACGTGGTGGAC
ATTCTGATCAAGAAAGAGGAAGAGATTGGCCTGGACAACTATAAAACCGA
AGTGGAAGTGCCTGCAGAGCAGTCAGAAAAATTCGTCCAGGAGGACGCCG
CCTATGTGAAGAGTTTGCTTGATGCAAGCTTTCTAGACCAT
BO04678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1110 | CG6073-PB | 1..1107 | 17..1123 | 5490 | 99.7 | Plus |
CG6073-RA | 1110 | CG6073-PA | 1..1107 | 17..1123 | 5490 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 91..1197 | 17..1123 | 5490 | 99.7 | Plus |
CG6073-RA | 1564 | CG6073-RA | 91..1197 | 17..1123 | 5490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187771..26188275 | 793..289 | 2495 | 99.6 | Minus |
3R | 32079331 | 3R | 26187385..26187717 | 1123..791 | 1650 | 99.7 | Minus |
3R | 32079331 | 3R | 26188332..26188521 | 289..100 | 950 | 100 | Minus |
3R | 32079331 | 3R | 26188632..26188717 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:18:38 has no hits.
BO04678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:16 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 1..1110 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:05 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 88..1198 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:33 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..1197 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:16 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 88..1198 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:19 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..1197 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:19 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26188332..26188519 | 102..289 | 100 | <- | Minus |
3R | 26188633..26188717 | 17..101 | 100 | | Minus |
3R | 26187382..26187714 | 794..1125 | 99 | <- | Minus |
3R | 26187771..26188274 | 290..793 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:33 Download gff for
BO04678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013104..22013436 | 794..1125 | 99 | <- | Minus |
arm_3R | 22013493..22013996 | 290..793 | 99 | <- | Minus |
arm_3R | 22014054..22014241 | 102..289 | 100 | <- | Minus |
arm_3R | 22014355..22014439 | 17..101 | 100 | | Minus |
BO04678.pep Sequence
Translation from 16 to 1141
> BO04678.pep
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLDASFLDH
BO04678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PB | 369 | CG6073-PB | 1..369 | 1..369 | 1867 | 100 | Plus |
CG6073-PA | 369 | CG6073-PA | 1..369 | 1..369 | 1867 | 100 | Plus |