Clone Sequence Records
BO04680.3prime Sequence
918 bp (792 high quality bases) assembled on 2005-12-01
> BO04680.3prime
ATGGTCTAGAAAGCTTGCGGTACCGGGCACCTTGCACAGGGTGGCATCAA
TCTTCTGCAGCTGCGGCAGTATGTCGCGCAGTTTGGAGCGGTAGCGAACA
TCCTTGGCCAGCGGATTGTACTCCAGGTAGATGGTCTGCAGCGCCTTGTT
CACCTTCAACAGCTCAATGTCCTTCCAGTCATCGACTCCGTTGTGGTTCA
GCCACAGCTCCTCGAGCAGTTCCAGCTTTTCCAGATTGGCAATGCCCTTC
AACCGGTTCTTGGCCAAGTCGAGGGTCTCCAATTTGGTGTTCTCCGAGAG
GTTTTCAATGGTTTCCACTCCGTTTTCCGAAACGTAGAGTTCGCGGAGGT
TGGCAAGCTTTTCAAGGTTCTCGATTTTTACAATGCGATTGGCCTGTAGA
CTGAGTATCTCCAAATTGACCAATGTGTCCAAGTTCTCGATCTTTGCTAT
CTTATTTTTGCCCAGGAAGAGCTGTCGTAGATTCACGAGCATTTCGATGT
TTTCGATCTTCTTCAGTTTGTTATCCCCCAGCTCTAGCATGGTCAGATTG
GTGAGCATGTCCAGGTTCTCGATTTGGGTTATCCGGTTCGACACAAAGTA
GACCTTCTCCAGCTTGACCAGCTTGTCAAGGTTCTCTATCTTCGTCAGAC
GATTGAAGCTAATGTCCAGCACCTCCAGGTGGGGCAAGTCGTCCAAATTC
TCAATCTTGGTGATCTGGTTGTCATACAGCTCCAGCTCAATCAGTGTTTT
CAGGCTGGACAAGTTCTCGATTTTCTTGATCAGATTCCAGCGCAGAAACA
GGCGCTCGATTCGAGTCAGCGGCTCGAAGTTCTCCAGCTTCTCGATCCGG
CGATGATTCAGATCAAGCTCGTAGCAGTCCGGATCGATTGTGATTATATC
CTCAATGGAAAGCACATC
BO04680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 87..978 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 341..1240 | 918..19 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17392007..17392906 | 918..19 | 4470 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:03:42 has no hits.
BO04680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:12 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-PA | 79..981 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:39 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 79..981 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:36:59 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 341..1240 | 19..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:45 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 341..1240 | 19..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:45 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17392007..17392906 | 19..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:36:59 Download gff for
BO04680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217729..13218628 | 19..918 | 99 | | Minus |
BO04680.5prime Sequence
951 bp (684 high quality bases) assembled on 2005-11-29
> BO04680.5prime
GAAGTTATCAGTCGACATGGGCGATGCTGATCGTGCGATGAACGAACCAG
AAGCCGCGAAAACTGTGTCCGGAATCCAGGTGATTCCCGCCGAGGATGTG
GCTTCCATTGAGGATATAATCACAATCGATCCGGACTGCTACGAGCTTGA
TCTGAATCATCGCCGGATCGAGAAGCTGGAGAACTTCGAGCCGCTGACTC
GAATCGAGCGCCTGTTTCTGCGCTGGAATCTGATCAAGAAAATCGAGAAC
TTGTCCAGCCTGAAAACACTGATTGAGCTGGAGCTGTATGACAACCAGAT
CACCAAGATTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGCTGGACA
TTAGCTTCAATCGTCTGACGAAGATAGAGAACCTTGACAAGCTGGTCAAG
CTGGAGAAGGTCTACTTTGTGTCGAACCGGATAACCCAAATCGAGAACCT
GGACATGCTCACCAATCTGACCATGCTAGAGCTGGGGGATAACAAACTGA
AGAAGATCGAAAACATCGAAATGCTCGTGAATCTACGACAGCTCTTCCTG
GGCAAAAATAAGATAGCAAAGATCGAGAACTTGGACACATTGGTCAATTT
GGAGATACTCAGTCTACAGGCCAATCGCATTGTAAAAATCGAGAACCTTG
AAAAGCTTGCCAACCTCCGCGAACTCTACGTTTCGGAAAACGGAGTGGAA
ACCATTGAAAACCTCTCGGAGAACACCAAATTGGAGACCCTCGACTTGGC
CAAGAACCGGTTGAAGGGCATTGCCAATCTGGAAAAGCTGGAACTGCTCG
AGGAGCTGTGGCTGAACCACAACGGAGTCGATGACTGGAAGGACATTGAG
CTGTTGAAGGTGAACAAGGCGCTGCAGACCATCTACCTGGAGTACAATCC
GCTGGGCCAGGATGTTCGCTACCGCTCCCAACTGCGCGACATACTGCCGC
A
BO04680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5851-PA | 981 | sds22-RA | 1..935 | 17..951 | 4600 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 262..1197 | 16..951 | 4635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391928..17392863 | 16..951 | 4635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:04:08 has no hits.
BO04680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:13 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:40 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5851-PA | 1..934 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:01 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 250..1196 | 2..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:11 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 250..1196 | 2..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:11 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391916..17392862 | 2..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:01 Download gff for
BO04680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217638..13218584 | 2..950 | 99 | | Plus |
BO04680.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629840
> BO04680.complete
GAAGTTATCAGTCGACATGGGCGATGCTGATCGTGCGATGAACGAACCAG
AAGCCGCGAAAACTGTGTCCGGAATCCAGGTGATTCCCGCCGAGGATGTG
GCTTCCATTGAGGATATAATCACAATCGATCCGGACTGCTACGAGCTTGA
TCTGAATCATCGCCGGATCGAGAAGCTGGAGAACTTCGAGCCGCTGACTC
GAATCGAGCGCCTGTTTCTGCGCTGGAATCTGATCAAGAAAATCGAGAAC
TTGTCCAGCCTGAAAACACTGATTGAGCTGGAGCTGTATGACAACCAGAT
CACCAAGATTGAGAATTTGGACGACTTGCCCCACCTGGAGGTGCTGGACA
TTAGCTTCAATCGTCTGACGAAGATAGAGAACCTTGACAAGCTGGTCAAG
CTGGAGAAGGTCTACTTTGTGTCGAACCGGATAACCCAAATCGAGAACCT
GGACATGCTCACCAATCTGACCATGCTAGAGCTGGGGGATAACAAACTGA
AGAAGATCGAAAACATCGAAATGCTCGTGAATCTACGACAGCTCTTCCTG
GGCAAAAATAAGATAGCAAAGATCGAGAACTTGGACACATTGGTCAATTT
GGAGATACTCAGTCTACAGGCCAATCGCATTGTAAAAATCGAGAACCTTG
AAAAGCTTGCCAACCTCCGCGAACTCTACGTTTCGGAAAACGGAGTGGAA
ACCATTGAAAACCTCTCGGAGAACACCAAATTGGAGACCCTCGACTTGGC
CAAGAACCGGTTGAAGGGCATTGCCAATCTGGAAAAGCTGGAACTGCTCG
AGGAGCTGTGGCTGAACCACAACGGAGTCGATGACTGGAAGGACATTGAG
CTGTTGAAGGTGAACAAGGCGCTGCAGACCATCTACCTGGAGTACAATCC
GCTGGCCAAGGATGTTCGCTACCGCTCCAAACTGCGCGACATACTGCCGC
AGCTGCAGAAGATTGATGCCACCCTGTGCAAGGTGCCCGGTACCGCAAGC
TTTCTAGACCAT
BO04680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 981 | CG5851-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-RA | 1354 | CG5851-RA | 262..1240 | 16..994 | 4895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17391928..17392906 | 16..994 | 4895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:30:32 has no hits.
BO04680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:18 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 1..981 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:58:06 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 178..1168 | 2..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:11 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 263..1240 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:18 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 178..1168 | 2..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:39 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sds22-RA | 263..1240 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:39 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17391929..17392906 | 17..996 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:11 Download gff for
BO04680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13217651..13218628 | 17..996 | 99 | | Plus |
BO04680.pep Sequence
Translation from 16 to 1012
> BO04680.pep
MGDADRAMNEPEAAKTVSGIQVIPAEDVASIEDIITIDPDCYELDLNHRR
IEKLENFEPLTRIERLFLRWNLIKKIENLSSLKTLIELELYDNQITKIEN
LDDLPHLEVLDISFNRLTKIENLDKLVKLEKVYFVSNRITQIENLDMLTN
LTMLELGDNKLKKIENIEMLVNLRQLFLGKNKIAKIENLDTLVNLEILSL
QANRIVKIENLEKLANLRELYVSENGVETIENLSENTKLETLDLAKNRLK
GIANLEKLELLEELWLNHNGVDDWKDIELLKVNKALQTIYLEYNPLAKDV
RYRSKLRDILPQLQKIDATLCKVPGTASFLDH
BO04680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sds22-PA | 326 | CG5851-PA | 1..326 | 1..326 | 1631 | 100 | Plus |
| TbCMF46-PA | 566 | CG13125-PA | 57..307 | 53..300 | 238 | 33.2 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 49..272 | 53..265 | 235 | 33.5 | Plus |
| Cep97-PB | 806 | CG3980-PB | 13..191 | 88..264 | 223 | 33.5 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 58..212 | 167..322 | 215 | 36.1 | Plus |
| Cep97-PB | 806 | CG3980-PB | 13..206 | 44..232 | 211 | 29.9 | Plus |
| Cep97-PB | 806 | CG3980-PB | 12..200 | 109..295 | 199 | 30.2 | Plus |
| Cep97-PB | 806 | CG3980-PB | 12..152 | 153..296 | 194 | 35.4 | Plus |
| CG18095-PC | 548 | CG18095-PC | 68..339 | 44..296 | 192 | 28.9 | Plus |
| Cep97-PB | 806 | CG3980-PB | 19..176 | 138..296 | 191 | 29.6 | Plus |
| Ppr-Y-PB | 569 | CG40440-PB | 75..199 | 33..154 | 161 | 32.8 | Plus |
| TbCMF46-PA | 566 | CG13125-PA | 83..176 | 33..126 | 158 | 38.3 | Plus |
