Clone BO04681 Report

Search the DGRC for BO04681

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG7768-RA
Protein status:BO04681.pep: validated full length
Sequenced Size:526

Clone Sequence Records

BO04681.5prime Sequence

524 bp (523 high quality bases) assembled on 2005-11-29

> BO04681.5prime
GAAGTTATCAGTCGACATGTCGTTGCCACGCGTTTACTTCGATATAGCCG
CAGGAGGTGAGAAGTTAGGTAGAATTGTGATGGAACTACGTTCGGATGTG
GTGCCCAAGACGGCGGAGAATTTCCGGGCCCTCTGCACCGGAGAGAAGGG
GTACGGCTACAAGGGATCACCATTCCACCGCGTCATCCCGAATTTCATGT
GTCAGGGCGGTGATTTCACTAATCAAAACGGAACTGGAGGACGCTCCATT
TATGGAAACAAGTTTCCCGATGAGAATTTCGAGCTAAAGCATACCGGAGC
TGGTGTACTTTCGATGGCCAATGCTGGGGCCAATACCAATGGATCTCAGT
TTTTCATTTGCACCGGGAAAACCACATGGCTGGATAATAAGCATGTCGTG
TTCGGCAAGGTCGTTGAGGGAATGGATATCGTCCAGAAGGTAGAATCTTA
CGGTTCACAAGATGGGAAGACCAGCAAGAAAGTAATTATCGAAGACTGCG
GAGCCCTCGCAAGCTTTCTAGACC

BO04681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 495 CG7768-RB 1..492 17..508 2460 100 Plus
CG7768-PA 495 CG7768-RA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..579 17..508 2460 100 Plus
CG7768-RA 717 CG7768-RA 126..617 17..508 2460 100 Plus
Cyp1-RA 1227 CG9916-RA 287..687 80..480 745 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218874 17..508 2460 100 Plus
X 23542271 X 16318213..16318598 480..95 730 79.3 Minus
Blast to na_te.dros performed on 2015-02-13 01:00:55 has no hits.

BO04681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:15 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PB 1..495 17..511 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:43 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PA 1..495 17..511 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:13 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 115..621 7..513 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:54 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 116..622 7..513 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:54 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14218373..14218879 7..513 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:13 Download gff for BO04681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211473..14211979 7..513 98   Plus

BO04681.3prime Sequence

524 bp (523 high quality bases) assembled on 2005-12-01

> BO04681.3prime
ATGGTCTAGAAAGCTTGCGAGGGCTCCGCAGTCTTCGATAATTACTTTCT
TGCTGGTCTTCCCATCTTGTGAACCGTAAGATTCTACCTTCTGGACGATA
TCCATTCCCTCAACGACCTTGCCGAACACGACATGCTTATTATCCAGCCA
TGTGGTTTTCCCGGTGCAAATGAAAAACTGAGATCCATTGGTATTGGCCC
CAGCATTGGCCATCGAAAGTACACCAGCTCCGGTATGCTTTAGCTCGAAA
TTCTCATCGGGAAACTTGTTTCCATAAATGGAGCGTCCTCCAGTTCCGTT
TTGATTAGTGAAATCACCGCCCTGACACATGAAATTCGGGATGACGCGGT
GGAATGGTGATCCCTTGTAGCCGTACCCCTTCTCTCCGGTGCAGAGGGCC
CGGAAATTCTCCGCCGTCTTGGGCACCACATCCGAACGTAGTTCCATCAC
AATTCTACCTAACTTCTCACCTCCTGCGGCTATATCGAAGTAAACGCGTG
GCAACGACATGTCGACTGATAACT

BO04681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 495 CG7768-RB 1..492 510..19 2460 100 Minus
CG7768-PA 495 CG7768-RA 1..492 510..19 2460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..579 510..19 2460 100 Minus
CG7768-RA 717 CG7768-RA 126..617 510..19 2460 100 Minus
Cyp1-RA 1227 CG9916-RA 287..687 447..47 745 79.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218874 510..19 2460 100 Minus
X 23542271 X 16318213..16318598 47..432 730 79.3 Plus
Blast to na_te.dros performed on 2015-02-12 01:10:54 has no hits.

BO04681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:14 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PB 1..495 16..510 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:42 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-PA 1..495 16..510 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:03 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 115..621 14..520 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:18 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 116..622 14..520 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:18 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14218373..14218879 14..520 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:03 Download gff for BO04681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211473..14211979 14..520 98   Minus

BO04681.complete Sequence

526 bp (526 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ638625

> BO04681.complete
GAAGTTATCAGTCGACATGTCGTTGCCACGCGTTTACTTCGATATAGCCG
CAGGAGGTGAGAAGTTAGGTAGAATTGTGATGGAACTACGTTCGGATGTG
GTGCCCAAGACGGCGGAGAATTTCCGGGCCCTCTGCACCGGAGAGAAGGG
GTACGGCTACAAGGGATCACCATTCCACCGCGTCATCCCGAATTTCATGT
GTCAGGGCGGTGATTTCACTAATCAAAACGGAACTGGAGGACGCTCCATT
TATGGAAACAAGTTTCCCGATGAGAATTTCGAGCTAAAGCATACCGGAGC
TGGTGTACTTTCGATGGCCAATGCTGGGGCCAATACCAATGGATCTCAGT
TTTTCATTTGCACCGGGAAAACCACATGGCTGGATAATAAGCATGTCGTG
TTCGGCAAGGTCGTTGAGGGAATGGATATCGTCCAGAAGGTAGAATCTTA
CGGTTCACAAGATGGGAAGACCAGCAAGAAAGTAATTATCGAAGACTGCG
GAGCCCTCGCAAGCTTTCTAGACCAT

BO04681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 495 CG7768-PB 1..492 17..508 2460 100 Plus
CG7768-RA 495 CG7768-PA 1..492 17..508 2460 100 Plus
Cyp1-RA 684 CG9916-PA 253..653 80..480 745 79.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-RB 679 CG7768-RB 88..579 17..508 2460 100 Plus
CG7768-RA 717 CG7768-RA 126..617 17..508 2460 100 Plus
Cyp1-RA 1227 CG9916-RA 287..687 80..480 745 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14218383..14218874 17..508 2460 100 Plus
X 23542271 X 16318213..16318598 480..95 730 79.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:09:02 has no hits.

BO04681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:31:19 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 1..495 17..511 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:29 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RB 465..971 7..513 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:47 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 125..616 17..510 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:31:19 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RB 465..971 7..513 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:05 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
CG7768-RA 126..617 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:05 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14218383..14218874 17..510 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:47 Download gff for BO04681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14211483..14211974 17..510 99   Plus

BO04681.pep Sequence

Translation from 16 to 526

> BO04681.pep
MSLPRVYFDIAAGGEKLGRIVMELRSDVVPKTAENFRALCTGEKGYGYKG
SPFHRVIPNFMCQGGDFTNQNGTGGRSIYGNKFPDENFELKHTGAGVLSM
ANAGANTNGSQFFICTGKTTWLDNKHVVFGKVVEGMDIVQKVESYGSQDG
KTSKKVIIEDCGALASFLDH

BO04681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7768-PB 164 CG7768-PB 1..164 1..164 875 100 Plus
CG7768-PA 164 CG7768-PA 1..164 1..164 875 100 Plus
Cyp1-PA 227 CG9916-PA 65..227 2..164 752 83.4 Plus
cyp33-PA 300 CG4886-PA 139..299 4..164 625 70.8 Plus
CG2852-PD 205 CG2852-PD 30..190 5..164 480 57.1 Plus