Clone Sequence Records
BO04682.3prime Sequence
674 bp (673 high quality bases) assembled on 2005-12-01
> BO04682.3prime
ATGGTCTAGAAAGCTTGCCTGACAGCACTGTTTGCGCACATCGGCGGTGA
CAGTCGGCTTTACGTCGATGGGCTCCACGTTCGACGGGCGGATGACGTCG
CCTTCCGGCGGATCTCTGATTTGTTTCTGCGACACAATGCGATAGATCTC
TGTGAGTATGTTCTGGAATGCCGTTTCAACGTTCGTCGAGTCTAGGGCCG
AGGTTTCTATGAAACTCAAGCCGTTGCGCTCGGCAAACAGCTTCGCCTCG
TCCGTGGGCACGGAGCGCAAGTGCCGCAAGTCGGACTTGTTGCCCACCAG
CATGATGACGATGTTCTGGTCGGCATGGTCGCGCAATTCCCGCAGCCACC
GCTCCACGTTCTCGTAGGTCAGATGCTTGGCAATGTCATAGACGAGCAGG
GCCCCCACGGCACCGCGGTAGTAGGCAGAGGTGATGGCGCGATAACGCTC
CTGGCCGGCCGTATCCCAGATTTGCGCTTTAATTGTTTTGCCATCGACCT
CTATGCTGCGCGTTGCAAACTCAACGCCAATCGTCGACTTGGACTCCAAA
TTGAATTCATTGCGCGTGAAACGTGAGAGCAAATTACTTTTGCCAACACC
GGAGTCACCGATAAGGACAACTTTGAACAGATAATCGTACTCGTCTTCTC
TTGCACCCATGTCGACTGATAACT
BO04682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5771-PB | 645 | Rab11-RB | 1..642 | 660..19 | 3110 | 99.3 | Minus |
CG5771-PA | 645 | Rab11-RA | 1..642 | 660..19 | 3110 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1050 | 660..19 | 3150 | 99.4 | Minus |
Rab11-RB | 1627 | CG5771-RB | 221..862 | 660..19 | 3150 | 99.4 | Minus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 475..383 | 180 | 79.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:29:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 500..150 | 1725 | 99.4 | Minus |
3R | 32079331 | 3R | 21115248..21115381 | 152..19 | 655 | 99.3 | Minus |
3R | 32079331 | 3R | 21113944..21114069 | 622..497 | 615 | 99.2 | Minus |
3R | 32079331 | 3R | 21111816..21111855 | 660..621 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:29:58 has no hits.
BO04682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:16 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-PB | 1..645 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:44 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5771-PA | 1..645 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:42 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..862 | 19..667 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:19 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..862 | 19..667 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:19 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21113946..21114067 | 499..620 | 99 | -> | Minus |
3R | 21111810..21111855 | 621..667 | 93 | -> | Minus |
3R | 21114753..21115101 | 150..498 | 99 | -> | Minus |
3R | 21115251..21115381 | 19..149 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:42 Download gff for
BO04682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16937532..16937577 | 621..667 | 93 | -> | Minus |
arm_3R | 16939668..16939789 | 499..620 | 99 | -> | Minus |
arm_3R | 16940475..16940823 | 150..498 | 99 | -> | Minus |
arm_3R | 16940973..16941103 | 19..149 | 99 | | Minus |
BO04682.5prime Sequence
674 bp (673 high quality bases) assembled on 2005-12-01
> BO04682.5prime
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGGCAAGCTTTCTAGACC
BO04682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5771-PB | 645 | Rab11-RB | 1..642 | 17..658 | 3110 | 99.3 | Plus |
CG5771-PA | 645 | Rab11-RA | 1..642 | 17..658 | 3110 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1050 | 17..658 | 3150 | 99.4 | Plus |
Rab11-RB | 1627 | CG5771-RB | 221..862 | 17..658 | 3150 | 99.4 | Plus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 202..294 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 177..527 | 1725 | 99.4 | Plus |
3R | 32079331 | 3R | 21115248..21115381 | 525..658 | 655 | 99.3 | Plus |
3R | 32079331 | 3R | 21113944..21114069 | 55..180 | 615 | 99.2 | Plus |
3R | 32079331 | 3R | 21111816..21111855 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:27:42 has no hits.
BO04682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:17 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-PB | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:46 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5771-PA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:17:25 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..862 | 10..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:33:49 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 215..862 | 10..658 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:33:49 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21111810..21111855 | 10..56 | 93 | -> | Plus |
3R | 21113946..21114067 | 57..178 | 99 | -> | Plus |
3R | 21114753..21115101 | 179..527 | 99 | -> | Plus |
3R | 21115251..21115381 | 528..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:17:25 Download gff for
BO04682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16937532..16937577 | 10..56 | 93 | -> | Plus |
arm_3R | 16939668..16939789 | 57..178 | 99 | -> | Plus |
arm_3R | 16940475..16940823 | 179..527 | 99 | -> | Plus |
arm_3R | 16940973..16941103 | 528..658 | 99 | | Plus |
BO04682.complete Sequence
676 bp (676 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629841
> BO04682.complete
GAAGTTATCAGTCGACATGGGTGCAAGAGAAGACGAGTACGATTATCTGT
TCAAAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTC
TCACGTTTCACGCGCAATGAATTCAATTTGGAGTCCAAGTCGACGATTGG
CGTTGAGTTTGCAACGCGCAGCATAGAGGTCGATGGCAAAACAATTAAAG
CGCAAATCTGGGATACGGCCGGCCAGGAGCGTTATCGCGCCATCACCTCT
GCCTACTACCGCGGTGCCGTGGGGGCCCTGCTCGTCTATGACATTGCCAA
GCATCTGACCTACGAGAACGTGGAGCGGTGGCTGCGGGAATTGCGCGACC
ATGCCGACCAGAACATCGTCATCATGCTGGTGGGCAACAAGTCCGACTTG
CGGCACTTGCGCTCCGTGCCCACGGACGAGGCGAAGCTGTTTGCCGAGCG
CAACGGCTTGAGTTTCATAGAAACCTCGGCCCTAGACTCGACGAACGTTG
AAACGGCATTCCAGAACATACTCACAGAGATCTATCGCATTGTGTCGCAG
AAACAAATCAGAGATCCGCCGGAAGGCGACGTCATCCGCCCGTCGAACGT
GGAGCCCATCGACGTAAAGCCGACTGTCACCGCCGATGTGCGCAAACAGT
GCTGTCAGGCAAGCTTTCTAGACCAT
BO04682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 645 | CG5771-PA | 1..642 | 17..658 | 3150 | 99.4 | Plus |
Rab11-RB | 645 | CG5771-PB | 1..642 | 17..658 | 3150 | 99.4 | Plus |
Rab8-RC | 624 | CG8287-PC | 177..269 | 202..294 | 180 | 79.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-RA | 1815 | CG5771-RA | 409..1050 | 17..658 | 3150 | 99.4 | Plus |
Rab11-RB | 1627 | CG5771-RB | 221..862 | 17..658 | 3150 | 99.4 | Plus |
Rab8-RC | 2043 | CG8287-RC | 751..843 | 202..294 | 180 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21114751..21115101 | 177..527 | 1725 | 99.4 | Plus |
3R | 32079331 | 3R | 21115248..21115381 | 525..658 | 655 | 99.3 | Plus |
3R | 32079331 | 3R | 21113944..21114069 | 55..180 | 615 | 99.2 | Plus |
3R | 32079331 | 3R | 21111816..21111855 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:34:16 has no hits.
BO04682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:42 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 1..645 | 17..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:55 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 404..1051 | 10..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:28 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 221..862 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:42 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RA | 404..1051 | 10..658 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:42 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab11-RB | 221..862 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:42 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21111816..21111855 | 17..56 | 100 | -> | Plus |
3R | 21113946..21114067 | 57..178 | 99 | -> | Plus |
3R | 21114753..21115101 | 179..527 | 99 | -> | Plus |
3R | 21115251..21115381 | 528..660 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:28 Download gff for
BO04682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16939668..16939789 | 57..178 | 99 | -> | Plus |
arm_3R | 16937538..16937577 | 17..56 | 100 | -> | Plus |
arm_3R | 16940475..16940823 | 179..527 | 99 | -> | Plus |
arm_3R | 16940973..16941103 | 528..660 | 97 | | Plus |
BO04682.pep Sequence
Translation from 16 to 676
> BO04682.pep
MGAREDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
RSIEVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYE
NVERWLRELRDHADQNIVIMLVGNKSDLRHLRSVPTDEAKLFAERNGLSF
IETSALDSTNVETAFQNILTEIYRIVSQKQIRDPPEGDVIRPSNVEPIDV
KPTVTADVRKQCCQASFLDH
BO04682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab11-PA | 214 | CG5771-PA | 1..214 | 1..214 | 1091 | 100 | Plus |
Rab11-PB | 214 | CG5771-PB | 1..214 | 1..214 | 1091 | 100 | Plus |
Rab14-PD | 215 | CG4212-PD | 1..181 | 1..181 | 478 | 51.9 | Plus |
Rab14-PA | 215 | CG4212-PA | 1..181 | 1..181 | 478 | 51.9 | Plus |
Rab14-PB | 239 | CG4212-PB | 25..205 | 1..181 | 478 | 51.9 | Plus |