Clone Sequence Records
BO04683.3prime Sequence
938 bp (814 high quality bases) assembled on 2005-12-01
> BO04683.3prime
ATGGTCTAGAAAGCTTGCGTACTTAATAATGGATCGGATACTCTCGCCCT
TGTGCATCAGATCGAATGCCTCGTTGATCTGCGACAGCGGCAGCTCGTGG
GTGATGAACTCGTCCACCAGCAGATCCTTCTTCAGGTAGTCCTCCACCAA
TTTGGGAACATCGGAAACGGAGCGCCAGCCTCCGAAGGCGGAACCCTTCC
ACACGCGACCCACGACCAGCTGGAAGGGTCGCGTGGAAATCTCCTGTCCA
GCACCGGCCACTCCGATCACCACCGAAGTGCCCCAACCCTTGTGTGTGGC
CTCCAAAGCGGAGCGCATGGTGTTCACATTGCCAATGCATTCGAAGGTGT
AATCGAATCCACCATCGGTCAGATCGATCAGGTAGTTCTGGATCGAACCC
TTGTCGGCCACATCCTTGGGGTTGACAAAGTCGGTGAATCCAAACTTCTT
GGCCAGCTCAAACTTGTCGGGATTGATGTCAATGCCGTAGATCTTGCCGG
CACCAGCCTTCTTGCAGCCCAAACCCACGGCCAAGCCCACAGCTCCCAAG
CCCCAAACAGCGCAGGTGCTACCGGCTTCCACCTTGGCAGTGTTGAGGGC
GGCTCCGTAGCCTGTGGAAATGCCGCACCCCAGCAGGCAGACTTTCTCCA
GCGGCGCCTTTTCGTTGATCTTTGTCAGCGAAATGTCGGCCACTACGGTG
TACTCTGCGAAGGTGGAGGTGCCCATGAAGTGGAACAACTGCTGTCCCTT
GCAGCTGAGACGGGAGGTGCCCTCGGGCATGACTCCAGCGCCCTGNGTAA
GTCGGATCTTTTGGCAGAGATTCGTCTTGCCGCTCTTGCAGAACTTGCAC
TCGTTGCACTGGGGGATGTAGAGAGCGATGACATGGTCGCCAGCCTTTGA
AGTTGGTCACGCCCTCGCCGACGCTCTCCACGATGCCG
BO04683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6598-PA | 1140 | Fdh-RA | 259..1137 | 897..19 | 4326 | 99.6 | Minus |
CG6598-PA | 1140 | Fdh-RA | 219..260 | 938..897 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 325..1243 | 938..19 | 4534 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10871000..10871918 | 19..938 | 4509 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:37:14 has no hits.
BO04683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:18 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-PA | 219..1140 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:47 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6598-PA | 219..1140 | 15..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:04 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 325..1248 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:14 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 325..1248 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:14 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10870995..10871918 | 13..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:04 Download gff for
BO04683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6696717..6697640 | 13..938 | 99 | | Plus |
BO04683.5prime Sequence
914 bp (866 high quality bases) assembled on 2005-12-01
> BO04683.5prime
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTAGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTGGGGGCACTTCGGT
GGTGATCGGAGTGG
BO04683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6598-PA | 1140 | Fdh-RA | 1..898 | 17..914 | 4390 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 107..1004 | 17..914 | 4430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10871239..10872027 | 914..126 | 3900 | 99.6 | Minus |
3R | 32079331 | 3R | 10872094..10872187 | 129..36 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:05:02 has no hits.
BO04683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:19 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:49 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6598-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:02 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1004 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:22 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1004 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:22 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10871239..10872025 | 128..914 | 99 | <- | Minus |
3R | 10872096..10872185 | 38..127 | 98 | <- | Minus |
3R | 10872255..10872275 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:02 Download gff for
BO04683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6696961..6697747 | 128..914 | 99 | <- | Minus |
arm_3R | 6697818..6697907 | 38..127 | 98 | <- | Minus |
arm_3R | 6697977..6697997 | 17..37 | 100 | | Minus |
BO04683.complete Sequence
1171 bp (1171 high quality bases) assembled on 2008-08-14
GenBank Submission: FJ629842
> BO04683.complete
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTAGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTTGGGGCACTTCGGT
GGTGATCGGAGTGGCCGGTGCTGGACAGGAGATTTCCACGCGACCCTTCC
AGCTGGTCGTGGGTCGCGTGTGGAAGGGTTCCGCCTTCGGAGGCTGGCGC
TCCGTTTCCGATGTTCCCAAATTGGTGGAGGACTACCTGAAGAAGGATCT
GCTGGTGGACGAGTTCATCACCCACGAGCTGCCGCTGTCGCAGATCAACG
AGGCATTCGATCTGATGCACAAGGGCGAGAGTATCCGATCCATTATTAAG
TACGCAAGCTTTCTAGACCAT
BO04683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1140 | CG6598-PA | 1..1137 | 17..1153 | 5640 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-RA | 1337 | CG6598-RA | 107..1243 | 17..1153 | 5640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10871000..10872027 | 1153..126 | 5110 | 99.8 | Minus |
3R | 32079331 | 3R | 10872094..10872187 | 129..36 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:37:27 has no hits.
BO04683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:58 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 1..1140 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:20 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 106..1247 | 17..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:43 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1243 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:58 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 106..1247 | 17..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:46 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fdh-RA | 107..1243 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:46 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10870998..10872025 | 128..1155 | 99 | <- | Minus |
3R | 10872096..10872185 | 38..127 | 98 | <- | Minus |
3R | 10872255..10872275 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:43 Download gff for
BO04683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6697977..6697997 | 17..37 | 100 | | Minus |
arm_3R | 6696720..6697747 | 128..1155 | 99 | <- | Minus |
arm_3R | 6697818..6697907 | 38..127 | 98 | <- | Minus |
BO04683.pep Sequence
Translation from 16 to 1171
> BO04683.pep
MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHT
DAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQC
NECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFA
EYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAV
WGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVA
DKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA
GAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEF
ITHELPLSQINEAFDLMHKGESIRSIIKYASFLDH
BO04683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fdh-PA | 379 | CG6598-PA | 1..379 | 1..379 | 1988 | 100 | Plus |