Clone BO04683 Report

Search the DGRC for BO04683

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptFdh-RA
Protein status:BO04683.pep: Imported from assembly
Sequenced Size:1171

Clone Sequence Records

BO04683.3prime Sequence

938 bp (814 high quality bases) assembled on 2005-12-01

> BO04683.3prime
ATGGTCTAGAAAGCTTGCGTACTTAATAATGGATCGGATACTCTCGCCCT
TGTGCATCAGATCGAATGCCTCGTTGATCTGCGACAGCGGCAGCTCGTGG
GTGATGAACTCGTCCACCAGCAGATCCTTCTTCAGGTAGTCCTCCACCAA
TTTGGGAACATCGGAAACGGAGCGCCAGCCTCCGAAGGCGGAACCCTTCC
ACACGCGACCCACGACCAGCTGGAAGGGTCGCGTGGAAATCTCCTGTCCA
GCACCGGCCACTCCGATCACCACCGAAGTGCCCCAACCCTTGTGTGTGGC
CTCCAAAGCGGAGCGCATGGTGTTCACATTGCCAATGCATTCGAAGGTGT
AATCGAATCCACCATCGGTCAGATCGATCAGGTAGTTCTGGATCGAACCC
TTGTCGGCCACATCCTTGGGGTTGACAAAGTCGGTGAATCCAAACTTCTT
GGCCAGCTCAAACTTGTCGGGATTGATGTCAATGCCGTAGATCTTGCCGG
CACCAGCCTTCTTGCAGCCCAAACCCACGGCCAAGCCCACAGCTCCCAAG
CCCCAAACAGCGCAGGTGCTACCGGCTTCCACCTTGGCAGTGTTGAGGGC
GGCTCCGTAGCCTGTGGAAATGCCGCACCCCAGCAGGCAGACTTTCTCCA
GCGGCGCCTTTTCGTTGATCTTTGTCAGCGAAATGTCGGCCACTACGGTG
TACTCTGCGAAGGTGGAGGTGCCCATGAAGTGGAACAACTGCTGTCCCTT
GCAGCTGAGACGGGAGGTGCCCTCGGGCATGACTCCAGCGCCCTGNGTAA
GTCGGATCTTTTGGCAGAGATTCGTCTTGCCGCTCTTGCAGAACTTGCAC
TCGTTGCACTGGGGGATGTAGAGAGCGATGACATGGTCGCCAGCCTTTGA
AGTTGGTCACGCCCTCGCCGACGCTCTCCACGATGCCG

BO04683.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6598-PA 1140 Fdh-RA 259..1137 897..19 4326 99.6 Minus
CG6598-PA 1140 Fdh-RA 219..260 938..897 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 325..1243 938..19 4534 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10871000..10871918 19..938 4509 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 15:37:14 has no hits.

BO04683.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:18 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-PA 219..1140 15..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:47 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6598-PA 219..1140 15..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:04 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 325..1248 13..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:14 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 325..1248 13..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:14 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10870995..10871918 13..938 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:04 Download gff for BO04683.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696717..6697640 13..938 99   Plus

BO04683.5prime Sequence

914 bp (866 high quality bases) assembled on 2005-12-01

> BO04683.5prime
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTAGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTGGGGGCACTTCGGT
GGTGATCGGAGTGG

BO04683.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6598-PA 1140 Fdh-RA 1..898 17..914 4390 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 107..1004 17..914 4430 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10871239..10872027 914..126 3900 99.6 Minus
3R 32079331 3R 10872094..10872187 129..36 455 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 00:05:02 has no hits.

BO04683.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:19 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:49 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6598-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:02 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1004 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:22 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1004 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:22 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10871239..10872025 128..914 99 <- Minus
3R 10872096..10872185 38..127 98 <- Minus
3R 10872255..10872275 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:02 Download gff for BO04683.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696961..6697747 128..914 99 <- Minus
arm_3R 6697818..6697907 38..127 98 <- Minus
arm_3R 6697977..6697997 17..37 100   Minus

BO04683.complete Sequence

1171 bp (1171 high quality bases) assembled on 2008-08-14

GenBank Submission: FJ629842

> BO04683.complete
GAAGTTATCAGTCGACATGTCTGCTACCGAGGGCAAGGTTATCACATGCA
AGGCCGCCGTCGCTTGGGAGGCAAAGAAGCCGCTGGTCATCGAGGATATC
GAGGTGGCGCCGCCCAAGGCTCATGAGGTGCGCATCAAGATCACGGCCAC
GGGCGTCTGCCACACGGATGCCTTCACCCTGAGCGGTGCCGATCCGGAGG
GCCTGTTCCCAGTGGTGTTGGGACATGAGGGCGCCGGCATCGTGGAGAGC
GTCGGCGAGGGCGTGACCAACTTCAAGGCTGGCGACCATGTCATCGCTCT
CTACATCCCCCAGTGCAACGAGTGCAAGTTCTGCAAGAGCGGCAAGACGA
ATCTCTGCCAAAAGATCCGACTTACCCAGGGCGCTGGAGTCATGCCCGAG
GGCACCTCCCGTCTCAGCTGCAAGGGACAGCAGTTGTTCCACTTCATGGG
CACCTCCACCTTCGCAGAGTACACCGTAGTGGCCGACATTTCGCTGACAA
AGATCAACGAAAAGGCGCCGCTGGAGAAAGTCTGCCTGCTGGGGTGCGGC
ATTTCCACAGGCTACGGAGCCGCCCTCAACACTGCCAAGGTGGAAGCCGG
TAGCACCTGCGCTGTTTGGGGCTTGGGAGCTGTGGGCTTGGCCGTGGGTT
TGGGCTGCAAGAAGGCTGGTGCCGGCAAGATCTACGGCATTGACATCAAT
CCCGACAAGTTTGAGCTGGCCAAGAAGTTTGGATTCACCGACTTTGTCAA
CCCCAAGGATGTGGCCGACAAGGGTTCGATCCAGAACTACCTGATCGATC
TGACCGATGGTGGATTCGATTACACCTTCGAATGCATTGGCAATGTGAAC
ACCATGCGCTCCGCTTTGGAGGCCACACACAAGGGTTGGGGCACTTCGGT
GGTGATCGGAGTGGCCGGTGCTGGACAGGAGATTTCCACGCGACCCTTCC
AGCTGGTCGTGGGTCGCGTGTGGAAGGGTTCCGCCTTCGGAGGCTGGCGC
TCCGTTTCCGATGTTCCCAAATTGGTGGAGGACTACCTGAAGAAGGATCT
GCTGGTGGACGAGTTCATCACCCACGAGCTGCCGCTGTCGCAGATCAACG
AGGCATTCGATCTGATGCACAAGGGCGAGAGTATCCGATCCATTATTAAG
TACGCAAGCTTTCTAGACCAT

BO04683.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1140 CG6598-PA 1..1137 17..1153 5640 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1337 CG6598-RA 107..1243 17..1153 5640 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10871000..10872027 1153..126 5110 99.8 Minus
3R 32079331 3R 10872094..10872187 129..36 455 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 23:37:27 has no hits.

BO04683.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:58 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 17..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:20 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 106..1247 17..1159 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:43 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1243 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:58 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 106..1247 17..1159 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:46 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 107..1243 17..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:46 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10870998..10872025 128..1155 99 <- Minus
3R 10872096..10872185 38..127 98 <- Minus
3R 10872255..10872275 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:43 Download gff for BO04683.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6697977..6697997 17..37 100   Minus
arm_3R 6696720..6697747 128..1155 99 <- Minus
arm_3R 6697818..6697907 38..127 98 <- Minus

BO04683.pep Sequence

Translation from 16 to 1171

> BO04683.pep
MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHT
DAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQC
NECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFA
EYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAV
WGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVA
DKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA
GAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEF
ITHELPLSQINEAFDLMHKGESIRSIIKYASFLDH

BO04683.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-PA 379 CG6598-PA 1..379 1..379 1988 100 Plus