Clone Sequence Records
BO04685.3prime Sequence
903 bp (846 high quality bases) assembled on 2005-12-01
> BO04685.3prime
ATGGTCTAGAAAGCTTGCGTCATCGTCCTCATCGTCCAGATCTAGGTCAT
CCAGTTCGCCGGCCAGATCAACAAAGAGATCCTTGTTGATGGGGGCAGCA
TCGTTGGCGGGTGCAGACGACGATGGGCCATCCTCGTCGGCCGCTGCGTC
CTCGGCTGCGGCGGTTTTGGCTGCTTCGGTTGCCTGGTCCAGTAGTCGAT
TGGTGGAGGCAATGGTGCCCGAGCCGTCCACCTCCTTGGCGGCCAGCGAC
AGGGCAGCCAGATCCAGTTCCTTGAACTCGACGGCATTATCGTCGTCGTC
CTCCCTGTTGTAGACGTCGAAAGCAGCGTCGCCCTCCTCCATGGGTCCGT
CGTCGACCAGATCCGGATTGAAGCTGAACATTTCGCGACCAGAGATGCCG
AACTGTTTGCCCTTGCTGAAGTCACTCTTCTTGCGCTCTTCCTCGGCAGC
CAGCTTGGCCTTCTTCTCGGCAATCTTGCGCTTCTTCCAGGCGAGGAAGG
ACTCGAGGGTGACGCGTGTCTGGTTGGGACCGAGGGCAGCGCGCTCCTTC
TCAATTAAATCGACCAGCGAGATTTCCGTGGGCTTTTCCTCCTTCTTCTT
ATCGCGCTTCAGCACATATCCAGCTGGCAAGGCGTGACGGTAGATGCACT
TTCCGCCGTTGGGGCACTCCCAGAACCAGCCGTACTTTGATTTTTCCACA
GCTTCCAGGAAGAATTTGCAAATAATATCCGTGGTGGGACGTTGCTTTTC
GCCGGAGCTCTTCTTCTCGACCACCTCCTTCAGCTTGGCATCGTCCCAGT
TGGTCATCGGATCGTCCTCGTCGCGCATGTCCACATAAATGGACCGCTTT
TCGACCTTGTTCTCCTGGGAAAGATCGTGGGAGAACTTGCACTTGTCGCC
CTT
BO04685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PA | 1215 | CG8635-RA | 328..1212 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 461..1345 | 903..19 | 4425 | 100 | Minus |
CG8635-RA | 1572 | CG8635-RA | 586..1470 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8630309..8631013 | 19..723 | 3525 | 100 | Plus |
2R | 25286936 | 2R | 8631072..8631251 | 724..903 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:11:01 has no hits.
BO04685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:20 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 328..1215 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:50 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 328..1215 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:39:04 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 586..1470 | 19..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:11:41 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 586..1470 | 19..903 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:41 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8630309..8631013 | 19..723 | 100 | <- | Plus |
2R | 8631072..8631251 | 724..903 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:39:04 Download gff for
BO04685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4517814..4518518 | 19..723 | 100 | <- | Plus |
arm_2R | 4518577..4518756 | 724..903 | 100 | | Plus |
BO04685.5prime Sequence
912 bp (783 high quality bases) assembled on 2005-12-01
> BO04685.5prime
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAANGCCAAGCTGGCTG
CCGAGGAAGAGCGCAAGAAGAGTGACTTCAGCAAGGGCAAACAGTTCGGC
ATCTCTGGTCGCGAAATGTTCAGCTTCAATCGGGATCTGGTCGACGACGG
ACCCATGGAGGA
BO04685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PA | 1215 | CG8635-RA | 1..896 | 17..912 | 4436 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 134..1029 | 17..912 | 4454 | 99.8 | Plus |
CG8635-RA | 1572 | CG8635-RA | 259..1154 | 17..912 | 4454 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8631072..8631508 | 523..87 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 8630625..8631013 | 912..524 | 1919 | 99.5 | Minus |
2R | 25286936 | 2R | 8631632..8631704 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:38:38 has no hits.
BO04685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:21 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:52 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:54 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1153 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:17 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1153 | 17..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:17 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8630626..8631013 | 524..911 | 99 | <- | Minus |
2R | 8631072..8631506 | 89..523 | 100 | <- | Minus |
2R | 8631633..8631704 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:54 Download gff for
BO04685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4518131..4518518 | 524..911 | 99 | <- | Minus |
arm_2R | 4518577..4519011 | 89..523 | 100 | <- | Minus |
arm_2R | 4519138..4519209 | 17..88 | 100 | | Minus |
BO04685.complete Sequence
1246 bp (1246 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629843
> BO04685.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTG
CCGAGGAAGAGCGCAAGAAGAGTGACTTCAGCAAGGGCAAACAGTTCGGC
ATCTCTGGTCGCGAAATGTTCAGCTTCAATCCGGATCTGGTCGACGACGG
ACCCATGGAGGAGGGCGACGCTGCTTTCGACGTCTACAACAGGGAGGACG
ACGACGATAATGCCGTCGAGTTCAAGGAACTGGATCTGGCTGCCCTGTCG
CTGGCCGCCAAGGAGGTGGACGGCTCGGGCACCATTGCCTCCACCAATCG
ACTACTGGACCAGGCAACCGAAGCAGCCAAAACCGCCGCAGCCGAGGACG
CAGCGGCCGACGAGGATGGCCCATCGTCGTCTGCACCCGCCAACGATGCT
GCCCCCATCAACAAGGATCTCTTTGTTGATCTGGCCGGCGAACTGGATGA
CCTAGATCTGGACGATGAGGACGATGACGCAAGCTTTCTAGACCAT
BO04685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1215 | CG8635-PB | 1..1212 | 17..1228 | 6060 | 100 | Plus |
CG8635-RA | 1215 | CG8635-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 134..1345 | 17..1228 | 6060 | 100 | Plus |
CG8635-RA | 1572 | CG8635-RA | 259..1470 | 17..1228 | 6060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8630309..8631013 | 1228..524 | 3525 | 100 | Minus |
2R | 25286936 | 2R | 8631072..8631508 | 523..87 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 8631632..8631704 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:35:35 has no hits.
BO04685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:43 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 1..1215 | 17..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:37 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1470 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:19 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1470 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:43 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1470 | 17..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:09 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1470 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:09 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8630307..8631013 | 524..1230 | 99 | <- | Minus |
2R | 8631072..8631506 | 89..523 | 100 | <- | Minus |
2R | 8631633..8631704 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:19 Download gff for
BO04685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4517812..4518518 | 524..1230 | 99 | <- | Minus |
arm_2R | 4518577..4519011 | 89..523 | 100 | <- | Minus |
arm_2R | 4519138..4519209 | 17..88 | 100 | | Minus |
BO04685.pep Sequence
Translation from 16 to 1246
> BO04685.pep
MPPKKAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQQKFIQQVQKQVQ
SGGQHPRQDGDKRKEEKEKKLAEQREMALIFKPVQTQKVEKGTDPKSVVC
AFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKL
KEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGKCIYRHA
LPAGYVLKRDKKKEEKPTEISLVDLIEKERAALGPNQTRVTLESFLAWKK
RKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSFNPDLVDDGPMEEG
DAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLLDQA
TEAAKTAAAEDAAADEDGPSSSAPANDAAPINKDLFVDLAGELDDLDLDD
EDDDASFLDH
BO04685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PB | 404 | CG8635-PB | 1..404 | 1..404 | 2103 | 100 | Plus |
CG8635-PA | 404 | CG8635-PA | 1..404 | 1..404 | 2103 | 100 | Plus |