Clone Sequence Records
BO04687.3prime Sequence
926 bp (793 high quality bases) assembled on 2005-12-01
> BO04687.3prime
ATGGTCTAGAAAGCTTGCGCGTCTTATGGAGATAATCTGGACGGCGGCGG
TGTGATCGCGACAAAAGTGGCTGGCACAGGCCGATACGTTCGCACATGGA
GTCACCTTGTAGCCACTGTCACCCAGCTGGGTCATGAACTTGTGCAGCGT
GTCCACATTCCGCACCGTGCTGGCCAGCAGGGTTTCCAGTCCACCTCCGC
GTCGGGAGTACAAATAGTCCATGGCACCCAGCAGTGCATCGAACTGGGAA
TCATCGTAGATCACATCGGCGGCTATCAAAAGATCCGTTTTAGCATGCGA
ATCCCAGGGGAACTCACTGACCGCAGCCCAGTTTAGCTGCTCCGCCTGGG
GCATCTGCTCCTTGGGCGTGTCTGGAAAATTCAGGCTGATATTCTCGCGC
ATTAGCTGGACGCAGGGTTCACTGCCATCGGTCAGCAGGACCTGGCCCAC
TTGCAGCTGCAGGGCCGGTAGTTTCAGCATGATTCCCAGCAGCCCGGCAC
CGGCTCCCAACTCCACTATGTTCTTGCCACGCACCAGGTCGCGGTGCTGC
AGGAGGTAATCGCCGAGGGCCAGAGCCGCTTCCCAGGTGCACAATCCCGT
TGTGCCCTCGGCCACGAAGCTGGTGGACTCACGGAGCGTGATGTGGGCGC
CCGGTTCGAGGAGATAATGTTTGTAGGCGTACGTGGATGACCCTGTGCTC
GCTTCGTTCTCCGCCACCGGACCGCACAAGCTGCTGTATATATCGTCGTG
CAGATCTTCCTGATCTCCGAGCAGGAGTAGCAGGTGCTTGAGGAAGGCCT
CCAGGTAGCTGCGACGCACAGGATAGCACTGGTTCATCGGGTGGCCACAG
GTGGCCGCTAACAGCTCCTGCTGATCCTCCAGCTGAGGGGCAGCGTGACC
GACGACCANGCCATCTTGTTCACCGG
BO04687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 960 | CG7889-RA | 96..957 | 880..19 | 4310 | 100 | Minus |
CG7889-PA | 960 | CG7889-RA | 49..96 | 926..879 | 221 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 158..1066 | 926..19 | 4509 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244661 | 903..119 | 3880 | 99.9 | Minus |
X | 23542271 | X | 19244718..19244822 | 123..19 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:37:28 has no hits.
BO04687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:22 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 49..960 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:55 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 49..960 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:06 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 158..1072 | 10..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:21 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 158..1072 | 10..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:21 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243788..19243811 | 903..926 | 95 | -> | Minus |
X | 19243877..19244657 | 123..902 | 99 | -> | Minus |
X | 19244719..19244828 | 10..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:06 Download gff for
BO04687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137821..19137844 | 903..926 | 95 | -> | Minus |
arm_X | 19137910..19138690 | 123..902 | 99 | -> | Minus |
arm_X | 19138752..19138861 | 10..122 | 96 | | Minus |
BO04687.5prime Sequence
914 bp (791 high quality bases) assembled on 2005-12-01
> BO04687.5prime
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACNAGGTGACTCCATGTGC
GAACGTATCGGCCT
BO04687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 960 | CG7889-RA | 1..898 | 17..914 | 4471 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 110..1007 | 17..914 | 4479 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244661 | 88..873 | 3930 | 100 | Plus |
X | 23542271 | X | 19243740..19243811 | 17..88 | 360 | 100 | Plus |
X | 23542271 | X | 19244718..19244763 | 869..914 | 219 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:10:56 has no hits.
BO04687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:23 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:56 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:03 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1007 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:34 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1007 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:34 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243740..19243811 | 17..88 | 100 | -> | Plus |
X | 19243877..19244657 | 89..869 | 100 | -> | Plus |
X | 19244719..19244763 | 870..914 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:03 Download gff for
BO04687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137773..19137844 | 17..88 | 100 | -> | Plus |
arm_X | 19137910..19138690 | 89..869 | 100 | -> | Plus |
arm_X | 19138752..19138796 | 870..914 | 97 | | Plus |
BO04687.complete Sequence
991 bp (991 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629844
> BO04687.complete
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACAAGGTGACTCCATGTGC
GAACGTATCGGCCTGTGCCAGCCACTTTTGTCGCGATCACACCGCCGCCG
TCCAGATTATCTCCATAAGACGCGCAAGCTTTCTAGACCAT
BO04687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 960 | CG7889-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-RA | 1468 | CG7889-RA | 110..1066 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19243876..19244661 | 88..873 | 3930 | 100 | Plus |
X | 23542271 | X | 19244718..19244822 | 869..973 | 525 | 100 | Plus |
X | 23542271 | X | 19243740..19243811 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:49 has no hits.
BO04687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:44 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 1..960 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:39 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 108..1070 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:00 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1066 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:44 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 108..1070 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:27 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7889-RA | 110..1066 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:27 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19243740..19243811 | 17..88 | 100 | -> | Plus |
X | 19243877..19244657 | 89..869 | 100 | -> | Plus |
X | 19244719..19244822 | 870..975 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:00 Download gff for
BO04687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19137773..19137844 | 17..88 | 100 | -> | Plus |
arm_X | 19137910..19138690 | 89..869 | 100 | -> | Plus |
arm_X | 19138752..19138855 | 870..975 | 98 | | Plus |
BO04687.pep Sequence
Translation from 16 to 991
> BO04687.pep
MSRKYGKLQQQFLCCYPVNKMAWSSVTLPLSWEDQQELLAATCGHPMNQC
YPVRRSYLEAFLKHLLLLLGDQEDLHDDIYSSLCGPVAENEASTGSSTYA
YKHYLLEPGAHITLRESTSFVAEGTTGLCTWEAALALGDYLLQHRDLVRG
KNIVELGAGAGLLGIMLKLPALQLQVGQVLLTDGSEPCVQLMRENISLNF
PDTPKEQMPQAEQLNWAAVSEFPWDSHAKTDLLIAADVIYDDSQFDALLG
AMDYLYSRRGGGLETLLASTVRNVDTLHKFMTQLGDSGYKVTPCANVSAC
ASHFCRDHTAAVQIISIRRASFLDH
BO04687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7889-PA | 319 | CG7889-PA | 1..319 | 1..319 | 1680 | 100 | Plus |