Clone BO04687 Report

Search the DGRC for BO04687

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:46
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG7889-RA
Protein status:BO04687.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO04687.3prime Sequence

926 bp (793 high quality bases) assembled on 2005-12-01

> BO04687.3prime
ATGGTCTAGAAAGCTTGCGCGTCTTATGGAGATAATCTGGACGGCGGCGG
TGTGATCGCGACAAAAGTGGCTGGCACAGGCCGATACGTTCGCACATGGA
GTCACCTTGTAGCCACTGTCACCCAGCTGGGTCATGAACTTGTGCAGCGT
GTCCACATTCCGCACCGTGCTGGCCAGCAGGGTTTCCAGTCCACCTCCGC
GTCGGGAGTACAAATAGTCCATGGCACCCAGCAGTGCATCGAACTGGGAA
TCATCGTAGATCACATCGGCGGCTATCAAAAGATCCGTTTTAGCATGCGA
ATCCCAGGGGAACTCACTGACCGCAGCCCAGTTTAGCTGCTCCGCCTGGG
GCATCTGCTCCTTGGGCGTGTCTGGAAAATTCAGGCTGATATTCTCGCGC
ATTAGCTGGACGCAGGGTTCACTGCCATCGGTCAGCAGGACCTGGCCCAC
TTGCAGCTGCAGGGCCGGTAGTTTCAGCATGATTCCCAGCAGCCCGGCAC
CGGCTCCCAACTCCACTATGTTCTTGCCACGCACCAGGTCGCGGTGCTGC
AGGAGGTAATCGCCGAGGGCCAGAGCCGCTTCCCAGGTGCACAATCCCGT
TGTGCCCTCGGCCACGAAGCTGGTGGACTCACGGAGCGTGATGTGGGCGC
CCGGTTCGAGGAGATAATGTTTGTAGGCGTACGTGGATGACCCTGTGCTC
GCTTCGTTCTCCGCCACCGGACCGCACAAGCTGCTGTATATATCGTCGTG
CAGATCTTCCTGATCTCCGAGCAGGAGTAGCAGGTGCTTGAGGAAGGCCT
CCAGGTAGCTGCGACGCACAGGATAGCACTGGTTCATCGGGTGGCCACAG
GTGGCCGCTAACAGCTCCTGCTGATCCTCCAGCTGAGGGGCAGCGTGACC
GACGACCANGCCATCTTGTTCACCGG

BO04687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 960 CG7889-RA 96..957 880..19 4310 100 Minus
CG7889-PA 960 CG7889-RA 49..96 926..879 221 97.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 158..1066 926..19 4509 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244661 903..119 3880 99.9 Minus
X 23542271 X 19244718..19244822 123..19 525 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:37:28 has no hits.

BO04687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:22 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 49..960 18..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:55 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 49..960 18..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:06 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 158..1072 10..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:21 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 158..1072 10..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:21 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19243788..19243811 903..926 95 -> Minus
X 19243877..19244657 123..902 99 -> Minus
X 19244719..19244828 10..122 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:06 Download gff for BO04687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137821..19137844 903..926 95 -> Minus
arm_X 19137910..19138690 123..902 99 -> Minus
arm_X 19138752..19138861 10..122 96   Minus

BO04687.5prime Sequence

914 bp (791 high quality bases) assembled on 2005-12-01

> BO04687.5prime
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACNAGGTGACTCCATGTGC
GAACGTATCGGCCT

BO04687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 960 CG7889-RA 1..898 17..914 4471 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 110..1007 17..914 4479 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244661 88..873 3930 100 Plus
X 23542271 X 19243740..19243811 17..88 360 100 Plus
X 23542271 X 19244718..19244763 869..914 219 97.8 Plus
Blast to na_te.dros performed on 2015-02-13 02:10:56 has no hits.

BO04687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:23 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:23:56 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:03 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1007 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:34 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1007 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:34 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19243740..19243811 17..88 100 -> Plus
X 19243877..19244657 89..869 100 -> Plus
X 19244719..19244763 870..914 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:03 Download gff for BO04687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137773..19137844 17..88 100 -> Plus
arm_X 19137910..19138690 89..869 100 -> Plus
arm_X 19138752..19138796 870..914 97   Plus

BO04687.complete Sequence

991 bp (991 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629844

> BO04687.complete
GAAGTTATCAGTCGACATGTCCAGAAAGTACGGCAAGCTGCAGCAGCAGT
TCCTCTGTTGCTATCCGGTGAACAAGATGGCCTGGTCGTCGGTCACGCTG
CCCCTCAGCTGGGAGGATCAGCAGGAGCTGTTAGCGGCCACCTGTGGCCA
CCCGATGAACCAGTGCTATCCTGTGCGTCGCAGCTACCTGGAGGCCTTCC
TCAAGCACCTGCTACTCCTGCTCGGAGATCAGGAAGATCTGCACGACGAT
ATATACAGCAGCTTGTGCGGTCCGGTGGCGGAGAACGAAGCGAGCACAGG
GTCATCCACGTACGCCTACAAACATTATCTCCTCGAACCGGGCGCCCACA
TCACGCTCCGTGAGTCCACCAGCTTCGTGGCCGAGGGCACAACGGGATTG
TGCACCTGGGAAGCGGCTCTGGCCCTCGGCGATTACCTCCTGCAGCACCG
CGACCTGGTGCGTGGCAAGAACATAGTGGAGTTGGGAGCCGGTGCCGGGC
TGCTGGGAATCATGCTGAAACTACCGGCCCTGCAGCTGCAAGTGGGCCAG
GTCCTGCTGACCGATGGCAGTGAACCCTGCGTCCAGCTAATGCGCGAGAA
TATCAGCCTGAATTTTCCAGACACGCCCAAGGAGCAGATGCCCCAGGCGG
AGCAGCTAAACTGGGCTGCGGTCAGTGAGTTCCCCTGGGATTCGCATGCT
AAAACGGATCTTTTGATAGCCGCCGATGTGATCTACGATGATTCCCAGTT
CGATGCACTGCTGGGTGCCATGGACTATTTGTACTCCCGACGCGGAGGTG
GACTGGAAACCCTGCTGGCCAGCACGGTGCGGAATGTGGACACGCTGCAC
AAGTTCATGACCCAGCTGGGTGACAGTGGCTACAAGGTGACTCCATGTGC
GAACGTATCGGCCTGTGCCAGCCACTTTTGTCGCGATCACACCGCCGCCG
TCCAGATTATCTCCATAAGACGCGCAAGCTTTCTAGACCAT

BO04687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 960 CG7889-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-RA 1468 CG7889-RA 110..1066 17..973 4785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19243876..19244661 88..873 3930 100 Plus
X 23542271 X 19244718..19244822 869..973 525 100 Plus
X 23542271 X 19243740..19243811 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:49 has no hits.

BO04687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:44 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 1..960 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:39 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 108..1070 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:00 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1066 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:44 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 108..1070 17..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:27 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
CG7889-RA 110..1066 17..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:27 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
X 19243740..19243811 17..88 100 -> Plus
X 19243877..19244657 89..869 100 -> Plus
X 19244719..19244822 870..975 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:00 Download gff for BO04687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19137773..19137844 17..88 100 -> Plus
arm_X 19137910..19138690 89..869 100 -> Plus
arm_X 19138752..19138855 870..975 98   Plus

BO04687.pep Sequence

Translation from 16 to 991

> BO04687.pep
MSRKYGKLQQQFLCCYPVNKMAWSSVTLPLSWEDQQELLAATCGHPMNQC
YPVRRSYLEAFLKHLLLLLGDQEDLHDDIYSSLCGPVAENEASTGSSTYA
YKHYLLEPGAHITLRESTSFVAEGTTGLCTWEAALALGDYLLQHRDLVRG
KNIVELGAGAGLLGIMLKLPALQLQVGQVLLTDGSEPCVQLMRENISLNF
PDTPKEQMPQAEQLNWAAVSEFPWDSHAKTDLLIAADVIYDDSQFDALLG
AMDYLYSRRGGGLETLLASTVRNVDTLHKFMTQLGDSGYKVTPCANVSAC
ASHFCRDHTAAVQIISIRRASFLDH

BO04687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7889-PA 319 CG7889-PA 1..319 1..319 1680 100 Plus