Clone Sequence Records
BO04693.3prime Sequence
503 bp (502 high quality bases) assembled on 2005-12-01
> BO04693.3prime
ATGGTCTAGAAAGCTTGCCGTATACTCACCGAGTCCGCGGGCAGCCACAT
CGGTGGCCACCAGTATCGAGTGCCGGCCATTGCGGAAGCTCGAGAGCACA
AAGTCGCGCTCCTGCTGCGACTTATCGCCGTGGATGGCGCATGCGCGCCA
GCCCTGGCGGGAGATATTGCGCGTGATCTCGTCCACACGCTTCTTGGTTT
CCACGAAAATGATGGTCTTGGTCTCGTTCTCCGCCGAGATGTCTGTTAGC
AGCTTGATCAGCTTCATCAATTTCTCATTCTCATCGCACACGTCCACGAT
CTGGAGGATGTTGTGATTGGCGCTCAGCGAAAGCGAACCAATGTTCACCT
GTATGTAGTTATTAAGGAATTCCTCGGCCAGCTGGCGCACCTCTTTGGGC
CAGGTAGCTGACCACATGAGTACCTGACGGTCCGGTCGGATCTGCTGCAT
GATCTTTCTGATCTGGGGCTCGAAGCCCATGTCGAGCATGTCGACTGATA
ACT
BO04693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PB | 474 | CG10077-RB | 1..471 | 489..19 | 2355 | 100 | Minus |
| CG10077-PA | 2457 | CG10077-RA | 946..1405 | 489..30 | 2300 | 100 | Minus |
| CG10279-PD | 1728 | Rm62-RD | 892..924 | 483..451 | 165 | 100 | Minus |
| CG10279-PC | 1737 | Rm62-RC | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PB | 1737 | Rm62-RB | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PE | 1737 | Rm62-RE | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PF | 1737 | Rm62-RF | 901..933 | 483..451 | 165 | 100 | Minus |
| CG10279-PA | 2160 | Rm62-RA | 1324..1356 | 483..451 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1676 | 489..19 | 2355 | 100 | Minus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 489..30 | 2300 | 100 | Minus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 489..30 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953762..6954232 | 19..489 | 2355 | 100 | Plus |
| 3R | 32079331 | 3R | 6004034..6004244 | 280..490 | 395 | 79.1 | Plus |
| X | 23542271 | X | 7929009..7929112 | 387..490 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:31:16 has no hits.
BO04693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:27 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 18..489 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:02 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 18..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:23 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1683 | 10..494 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:09 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1683 | 10..494 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:09 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953754..6954236 | 10..494 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:23 Download gff for
BO04693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946854..6947336 | 10..494 | 98 | | Plus |
BO04693.5prime Sequence
503 bp (502 high quality bases) assembled on 2005-11-29
> BO04693.5prime
GAAGTTATCAGTCGACATGCTCGACATGGGCTTCGAGCCCCAGATCAGAA
AGATCATGCAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCT
ACCTGGCCCAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTA
CATACAGGTGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCC
TCCAGATCGTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATC
AAGCTGCTAACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTT
CGTGGAAACCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCC
AGGGCTGGCGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGC
GACTTTGTGCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGC
CACCGATGTGGCTGCCCGCGGACTCGGTGAGTATACGGCAAGCTTTCTAG
ACC
BO04693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PB | 474 | CG10077-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG10077-PA | 2457 | CG10077-RA | 946..1405 | 17..476 | 2300 | 100 | Plus |
| CG10279-PD | 1728 | Rm62-RD | 892..924 | 23..55 | 165 | 100 | Plus |
| CG10279-PC | 1737 | Rm62-RC | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PB | 1737 | Rm62-RB | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PE | 1737 | Rm62-RE | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PF | 1737 | Rm62-RF | 901..933 | 23..55 | 165 | 100 | Plus |
| CG10279-PA | 2160 | Rm62-RA | 1324..1356 | 23..55 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1676 | 17..487 | 2355 | 100 | Plus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953762..6954232 | 487..17 | 2355 | 100 | Minus |
| 3R | 32079331 | 3R | 6004034..6004244 | 226..16 | 395 | 79.1 | Minus |
| X | 23542271 | X | 7929009..7929112 | 119..16 | 265 | 83.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:02:15 has no hits.
BO04693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:28 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:03 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-PB | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:07:17 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1683 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:12 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1202..1683 | 12..496 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:12 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953754..6954236 | 12..496 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:07:17 Download gff for
BO04693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946854..6947336 | 12..496 | 98 | | Minus |
BO04693.complete Sequence
505 bp (505 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629846
> BO04693.complete
GAAGTTATCAGTCGACATGCTCGACATGGGCTTCGAGCCCCAGATCAGAA
AGATCATGCAGCAGATCCGACCGGACCGTCAGGTACTCATGTGGTCAGCT
ACCTGGCCCAAAGAGGTGCGCCAGCTGGCCGAGGAATTCCTTAATAACTA
CATACAGGTGAACATTGGTTCGCTTTCGCTGAGCGCCAATCACAACATCC
TCCAGATCGTGGACGTGTGCGATGAGAATGAGAAATTGATGAAGCTGATC
AAGCTGCTAACAGACATCTCGGCGGAGAACGAGACCAAGACCATCATTTT
CGTGGAAACCAAGAAGCGTGTGGACGAGATCACGCGCAATATCTCCCGCC
AGGGCTGGCGCGCATGCGCCATCCACGGCGATAAGTCGCAGCAGGAGCGC
GACTTTGTGCTCTCGAGCTTCCGCAATGGCCGGCACTCGATACTGGTGGC
CACCGATGTGGCTGCCCGCGGACTCGGTGAGTATACGGCAAGCTTTCTAG
ACCAT
BO04693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 1419 | CG10077-PC | 946..1416 | 17..487 | 2355 | 100 | Plus |
| CG10077-RD | 2457 | CG10077-PD | 946..1405 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 2457 | CG10077-PA | 946..1405 | 17..476 | 2300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-RC | 3634 | CG10077-RC | 1206..1676 | 17..487 | 2355 | 100 | Plus |
| CG10077-RD | 3420 | CG10077-RD | 1070..1529 | 17..476 | 2300 | 100 | Plus |
| CG10077-RA | 3543 | CG10077-RA | 1193..1652 | 17..476 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6953762..6954232 | 487..17 | 2355 | 100 | Minus |
| 3R | 32079331 | 3R | 6004034..6004244 | 226..16 | 395 | 79.1 | Minus |
| X | 23542271 | X | 7929009..7929112 | 119..16 | 265 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:52:18 has no hits.
BO04693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:01 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 1..474 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:34:24 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 15..496 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:29 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1206..1676 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:01 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RB | 15..496 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:57 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10077-RC | 1206..1676 | 17..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:57 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6953758..6954232 | 17..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:29 Download gff for
BO04693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6946858..6947332 | 17..489 | 99 | | Minus |
BO04693.pep Sequence
Translation from 16 to 505
> BO04693.pep
MLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNI
GSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKK
RVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAA
RGLGEYTASFLDH
BO04693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10077-PC | 472 | CG10077-PC | 316..472 | 1..157 | 802 | 100 | Plus |
| CG10077-PD | 818 | CG10077-PD | 316..468 | 1..153 | 779 | 100 | Plus |
| CG10077-PA | 818 | CG10077-PA | 316..468 | 1..153 | 779 | 100 | Plus |
| Rm62-PJ | 458 | CG10279-PJ | 296..453 | 1..156 | 557 | 71.5 | Plus |
| Rm62-PK | 485 | CG10279-PK | 296..460 | 1..163 | 552 | 69.1 | Plus |
