Clone Sequence Records
BO04704.3prime Sequence
930 bp (821 high quality bases) assembled on 2006-01-06
> BO04704.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGTGTTTCGAGTTATCTACTTCATGTG
GCCAATCTAAATCGATTCCCACCACATCTAGAGCTTGAATATCCATGGGT
TTGCCTATAATAGAGGACAATGATGGCGTGGTCCTACCAAATTCGCCATG
AACTAACTCTTTTATGTAAGTCCCCGCTTGAGTGACAATATCGATGATCA
AGGCTTTTGGATTTCCACGATGCACCTTGGCGGTGACACTGTAAATTGTT
CTGGGACGCGTGTGCAATGGACGACGATGAAGAACTCGTATGGGGGTCTT
TTGTTGTATGTTAAAGCTTGCTGATATTTGCAGTTGTTCCAGAATCTTTA
CTGATACTGGTTCTTGCAGGGCACAAAGAGCGCGATAGAATTTCTTTTTC
TGCTCTTCTCCCGTCTTTATGTGGGTTAATTCTTCTCTGGGCACGACTTG
GAGGTGATGTATAGACACCATACCAGACGCATCCACAGCCCGTTCCATCG
CAAAGGCTTCATCTTTAGTTAGGCAACTCCTTTTGGCATTTGGAATTTCT
AGAACAAAAGGCCTTCCTTTCCCCAGGCATCGGACGTCCACATCTTCTCT
GCCACTCGACATGAAGGTGATTTTGCCCAGCTTCTCTGTAAAGTGGGGAC
CGACATGCCTAATTATAATTTCCTCGATACTGTCCTCCATGAGCCTTTGG
CCATTCAAAATCCAGGGAGTATGTGAAAGTTCCCTGCTCAGCTTTCGATA
TCTGCCAGCTACACAAATCAATGGTCCCTGCAGGTCTATGGAAGTAAGTT
TTATAGATTCCTCTACGTTAGAGCAGGGTATCTGAAAATATTTCTCATAG
GTTTCCGCCTTAACTTTGGAGGGTTGATACTGTTTCTCTAGTAAACCTCG
CGAAATTTCAATGCGCTTTTGATGCGAGGC
BO04704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-PA | 1503 | CG3709-RA | 589..1500 | 930..19 | 4560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-RA | 1699 | CG3709-RA | 647..1558 | 930..19 | 4560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 153680..154591 | 19..930 | 4560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:31:26 has no hits.
BO04704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:32 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-PA | 589..1503 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:09 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-PA | 589..1503 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:48:25 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 647..1562 | 13..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:15:44 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 647..1562 | 13..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:15:44 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 153676..154591 | 13..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:48:25 Download gff for
BO04704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 153676..154591 | 13..930 | 99 | | Plus |
BO04704.5prime Sequence
887 bp (731 high quality bases) assembled on 2005-11-29
> BO04704.5prime
GAAGTTATCAGTCGACATGAAAAACCAGGATTTGGTGGAATATTTAAGGT
CGTGCGGGGTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGGCCAGAGGC
GCGGAGTATAGAAACATCAATGAGACTTTGCAAAAGTTGGATGTAAAACT
AAATGAAAATGTGGAAAACGAAGAGCTTGTTATATCCGAAGGGAGTCAAC
CATCTAAAAGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGGGTTTATTC
TCCAAAGACTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCATCGGATTT
CGCGAAATACGATTGCCAGAAAATCGTTCTGGCGATTTGTCTACCGATGT
CGCTTCAGTTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAAGAAGATTT
GGACCATCTATAGACGAAAACAATCCCCCAGACGTGCCTATAAAAGAGGC
TGTCAAGCTGATCCTACACCCTATAATCTGTGAAAAGCTGGCCAAGGTTT
ACGATGCCAACGGTCTGATGATCAATATAGACCTCACGCACAGTCTGGAA
GGCGAAGAGGTGGAAAAACTGGTCAAATTAAACAAAGAAGCCTTTCCCGC
CAAGGCCTCGCATCAAAAGCGCATTGAAATTTCGCGAGGTTTACTAGAGA
AACAGTATCAACCCTCCAAAGTTAAGGCGGAAACCTATGAGAAATATTTT
CAGATACCCTGCTCTAACGTAGAGGAATCTATAAAACTTACTTCCATAGA
CCTGCAGGGACCATTGATTTGTGTAGCTGGCAGATATCGAAAGCTGAGCA
GGGAACTTTCACATACTCCCTGGATTTTGAATGGCCAAAGGCTCATGGAG
GACAGTATCGAGGAAATTATATTAGGCATGTCGGTCC
BO04704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-PA | 1503 | CG3709-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-RA | 1699 | CG3709-RA | 59..930 | 17..887 | 4335 | 99.9 | Plus |
| CG11455-RJ | 869 | CG11455-RJ | 40..159 | 136..17 | 600 | 100 | Minus |
| CG11455-RK | 798 | CG11455-RK | 40..90 | 136..86 | 255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 154308..155061 | 887..135 | 3720 | 99.9 | Minus |
| 2L | 23513712 | 2L | 155128..155247 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:11:12 has no hits.
BO04704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:33 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-PA | 1..872 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:11 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-PA | 1..872 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:05 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 52..930 | 10..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:22 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 52..930 | 10..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:22 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 154308..155059 | 137..887 | 99 | <- | Minus |
| 2L | 155128..155251 | 10..136 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:05 Download gff for
BO04704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 154308..155059 | 137..887 | 99 | <- | Minus |
| arm_2L | 155128..155251 | 10..136 | 96 | | Minus |
BO04704.complete Sequence
1534 bp (1534 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629847
> BO04704.complete
GAAGTTATCAGTCGACATGAAAAACCAGGATTTGGTGGAATATTTAAGGT
CGTGCGGGGTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGGCCAGAGGC
GCGGAGTATAGAAACATCAATGAGACTTTGCAAAAGTTGGATGTAAAACT
AAATGAAAATGTGGAAAACGAAGAGCTTGTTATATCCGAAGGGAGTCAAC
CATCTAAAAGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGGGTTTATTC
TCCAAAGACTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCATCGGATTT
CGCGAAATACGATTGCCAGAAAATCGTTCTGGCGATTTGTCTACCGATGT
CGCTTCAGTTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAAGAAGATTT
GGACCATCTATAGACGAAAACAATCCCCCAGACGTGCCTATAAAAGAGGC
TGTCAAGCTGATCCTACACCCTATAATCTGTGAAAAGCTGGCCAAGGTTT
ACGATGCCAACGGTCTGATGATCAATATAGACCTCACGCACAGTCTGGAA
GGCGAAGAGGTGGAAAAACTGGTCAAATTAAACAAAGAAGCCTTTCCCGC
CAAGGCCTCGCATCAAAAGCGCATTGAAATTTCGCGAGGTTTACTAGAGA
AACAGTATCAACCCTCCAAAGTTAAGGCGGAAACCTATGAGAAATATTTT
CAGATACCCTGCTCTAACGTAGAGGAATCTATAAAACTTACTTCCATAGA
CCTGCAGGGACCATTGATTTGTGTAGCTGGCAGATATCGAAAGCTGAGCA
GGGAACTTTCACATACTCCCTGGATTTTGAATGGCCAAAGGCTCATGGAG
GACAGTATCGAGGAAATTATAATTAGGCATGTCGGTCCCCACTTTACAGA
GAAGCTGGGCAAAATCACCTTCATGTCGAGTGGCAGAGAAGATGTGGACG
TCCGATGCCTGGGGAAAGGAAGGCCTTTTGTTCTAGAAATTCCAAATGCC
AAAAGGAGTTGCCTAACTAAAGATGAAGCCTTTGCGATGGAACGGGCTGT
GGATGCGTCTGGTATGGTGTCTATACATCACCTCCAAGTCGTGCCCAGAG
AAGAATTAACCCACATAAAGACGGGAGAAGAGCAGAAAAAGAAATTCTAT
CGCGCTCTTTGTGCCCTGCAAGAACCAGTATCAGTAAAGATTCTGGAACA
ACTGCAAATATCAGCAAGCTTTAACATACAACAAAAGACCCCCATACGAG
TTCTTCATCGTCGTCCATTGCACACGCGTCCCAGAACAATTTACAGTGTC
ACCGCCAAGGTGCATCGTGGAAATCCAAAAGCCTTGATCATCGATATTGT
CACTCAAGCGGGGACTTACATAAAAGAGTTAGTTCATGGCGAATTTGGTA
GGACCACGCCATCATTGTCCTCTATTATAGGCAAACCCATGGATATTCAA
GCTCTAGATGTGGTGGGAATCGATTTAGATTGGCCACATGAAGTAGATAA
CTCGAAACACAAGGAAGCAAGCTTTCTAGACCAT
BO04704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-RA | 1503 | CG3709-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-RA | 1699 | CG3709-RA | 59..1558 | 17..1516 | 7500 | 100 | Plus |
| CG11455-RJ | 869 | CG11455-RJ | 40..159 | 136..17 | 600 | 100 | Minus |
| CG11455-RK | 798 | CG11455-RK | 40..90 | 136..86 | 255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 153680..155061 | 1516..135 | 6910 | 100 | Minus |
| 2L | 23513712 | 2L | 155128..155247 | 136..17 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:34:52 has no hits.
BO04704.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:45 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 1..1503 | 17..1517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:41 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 68..1578 | 10..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:23 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 59..1558 | 17..1518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:46 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 68..1578 | 10..1522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:15 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 59..1558 | 17..1518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:15 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 153676..155059 | 137..1518 | 99 | <- | Minus |
| 2L | 155128..155247 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:23 Download gff for
BO04704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 153676..155059 | 137..1518 | 99 | <- | Minus |
| arm_2L | 155128..155247 | 17..136 | 100 | | Minus |
BO04704.pep Sequence
Translation from 16 to 1534
> BO04704.pep
MKNQDLVEYLRSCGVCEICQLRYLKARGAEYRNINETLQKLDVKLNENVE
NEELVISEGSQPSKRARLGVCSTCLGLFSKDFQNELLSSILASDFAKYDC
QKIVLAICLPMSLQLRQLAMWFALRRRFGPSIDENNPPDVPIKEAVKLIL
HPIICEKLAKVYDANGLMINIDLTHSLEGEEVEKLVKLNKEAFPAKASHQ
KRIEISRGLLEKQYQPSKVKAETYEKYFQIPCSNVEESIKLTSIDLQGPL
ICVAGRYRKLSRELSHTPWILNGQRLMEDSIEEIIIRHVGPHFTEKLGKI
TFMSSGREDVDVRCLGKGRPFVLEIPNAKRSCLTKDEAFAMERAVDASGM
VSIHHLQVVPREELTHIKTGEEQKKKFYRALCALQEPVSVKILEQLQISA
SFNIQQKTPIRVLHRRPLHTRPRTIYSVTAKVHRGNPKALIIDIVTQAGT
YIKELVHGEFGRTTPSLSSIIGKPMDIQALDVVGIDLDWPHEVDNSKHKE
ASFLDH
BO04704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-PA | 500 | CG3709-PA | 1..500 | 1..500 | 2575 | 100 | Plus |
