Clone BO04709 Report

Search the DGRC for BO04709

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptslow-RA
Protein status:BO04709.pep: validated full length
Sequenced Size:1570

Clone Sequence Records

BO04709.3prime Sequence

827 bp (788 high quality bases) assembled on 2005-12-01

> BO04709.3prime
ATGGTCTAGAAAGCTTGCGGGGCAATTGGCATTGGGGCCATTCCGGCACT
TCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGTC
TTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCAG
CGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGCA
GCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTTT
TCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATATC
GTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACCT
TCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCGG
CAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCTC
CGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCAG
TTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCAG
CGCGCGGAGCAAATAGGTTTCATGCACGAATCCGACCTTGGGTTTTCCCG
GCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGAT
CGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCAC
TTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGCCACGTGCTTCCA
GGTGGGACGACTGTAGACCTCCGTTCGCTTCACGGGCATCGTAACCGTTC
GCTGTTGCATGCAAATGTGCCGCCTTT

BO04709.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 728..1536 827..19 4045 100 Minus
CG7447-PB 1539 CG7447-RB 728..1536 827..19 4045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 955..1763 827..19 4045 100 Minus
slow-RA 2364 CG7447-RA 1215..2023 827..19 4045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4402225..4402644 566..147 2100 100 Minus
3L 28110227 3L 4401898..4402156 825..567 1295 100 Minus
3L 28110227 3L 4402711..4402840 148..19 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:08:16 has no hits.

BO04709.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:40 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 728..1539 15..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:21 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 728..1539 15..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:09 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1215..2026 15..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:20 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 1215..2026 15..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:20 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4401896..4402156 567..827 99 -> Minus
3L 4402225..4402643 148..566 100 -> Minus
3L 4402712..4402843 15..147 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:09 Download gff for BO04709.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4401896..4402156 567..827 99 -> Minus
arm_3L 4402225..4402643 148..566 100 -> Minus
arm_3L 4402712..4402843 15..147 98   Minus

BO04709.5prime Sequence

893 bp (847 high quality bases) assembled on 2005-12-01

> BO04709.5prime
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAAAAGTGCACCAGGGTGCAAGGTGGTC

BO04709.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7447-PA 1539 CG7447-RA 1..869 17..885 4320 99.8 Plus
CG7447-PB 1539 CG7447-RB 1..869 17..885 4320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 228..1103 17..893 4345 99.8 Plus
slow-RA 2364 CG7447-RA 488..1363 17..893 4345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390491..4391222 17..748 3660 100 Plus
3L 28110227 3L 4401898..4402037 746..885 685 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 00:11:23 has no hits.

BO04709.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:41 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 1..876 17..893 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:22 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7447-PB 1..876 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:12 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1363 9..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:46 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
slow-RA 481..1363 9..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:46 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4401900..4402044 748..893 98   Plus
3L 4390484..4391221 9..747 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:12 Download gff for BO04709.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4390484..4391221 9..747 99 -> Plus
arm_3L 4401900..4402044 748..893 98   Plus

BO04709.complete Sequence

1570 bp (1570 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629848

> BO04709.complete
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAGAAGTGCACCAGGGTGCAGGTGGTCCACGAGCA
GGCCTACAGGGACGTCATCGATCACAAGACCGCCCAGCAGATGACCTACG
ACTGCTGCACGGGATGGAGCCGGGAAAACCCAAGGTCGGATTCGTGCATG
AAACCTATTTGCTCCGCGCGCTGCCAAAACGGTGGCAATTGTACGGCTCC
TAGCACCTGCAGCTGTCCAACTGGTTTCACAGGACGTTTCTGCGAGCAGG
ATGTGGACGAGTGCCAGACGGAGAAGCCATGCGATCAACAGTGCATCAAT
ACGCATGGATCTTACTTCTGCCGCTGCCGTCAGGGATTCGTTCTCCAGTC
GGATCAGCAGAGCTGCAAGAAGGTGTCCACGAATGCGGACGATGCGTTCG
AGGCTCGGGATCTGGAGAACGATATCGATGATACGGACGCGGAGGTGGCC
ACGCGACTCCAGAAGATCGAAAAGTCCTTGGCCAATGAGCGAGTGCACAC
GAACGAGCTGCAAAAGTCGCTGCAGGCCACCTACAGTGTGGTGGACACAC
TCAAGAGTCGGCTAAGCACGCTGGAAAAGCAGGCTCAGGATGTCAGTCGA
CTGCAGACGAATCTCTACAAGACAGAGTCCCGGACGAACAAGCTGGAGGG
TATGCTGAACCTGCTGCTGAAGTGCCGGAATGGCCCCAATGCCAATTGCC
CCGCAAGCTTTCTAGACCAT

BO04709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 1539 CG7447-PB 1..1536 17..1552 7680 100 Plus
slow-RA 1539 CG7447-PA 1..1536 17..1552 7680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
slow-RB 2104 CG7447-RB 228..1763 17..1552 7680 100 Plus
slow-RA 2364 CG7447-RA 488..2023 17..1552 7680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4390491..4391222 17..748 3660 100 Plus
3L 28110227 3L 4402225..4402644 1005..1424 2100 100 Plus
3L 28110227 3L 4401898..4402156 746..1004 1295 100 Plus
3L 28110227 3L 4402711..4402840 1423..1552 650 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:35:50 has no hits.

BO04709.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:49 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 1..1539 17..1556 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:13 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 215..1750 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 488..2023 17..1554 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:49 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
CG7447-RB 208..1753 9..1556 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:15 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
slow-RA 488..2023 17..1554 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:15 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4390491..4391221 17..747 100 -> Plus
3L 4401900..4402156 748..1004 100 -> Plus
3L 4402225..4402643 1005..1423 100 -> Plus
3L 4402712..4402840 1424..1554 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for BO04709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4390491..4391221 17..747 100 -> Plus
arm_3L 4401900..4402156 748..1004 100 -> Plus
arm_3L 4402225..4402643 1005..1423 100 -> Plus
arm_3L 4402712..4402840 1424..1554 98   Plus

BO04709.pep Sequence

Translation from 16 to 1570

> BO04709.pep
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCPASFLDH

BO04709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
slow-PB 512 CG7447-PB 1..512 1..512 2784 100 Plus
slow-PA 512 CG7447-PA 1..512 1..512 2784 100 Plus
N-PB 2703 CG3936-PB 157..247 304..391 191 42.7 Plus
N-PA 2703 CG3936-PA 157..247 304..391 191 42.7 Plus
N-PB 2703 CG3936-PB 812..987 273..422 180 29 Plus
N-PA 2703 CG3936-PA 812..987 273..422 180 29 Plus
N-PB 2703 CG3936-PB 258..380 275..404 175 34.8 Plus
N-PA 2703 CG3936-PA 258..380 275..404 175 34.8 Plus