Clone Sequence Records
BO04709.3prime Sequence
827 bp (788 high quality bases) assembled on 2005-12-01
> BO04709.3prime
ATGGTCTAGAAAGCTTGCGGGGCAATTGGCATTGGGGCCATTCCGGCACT
TCAGCAGCAGGTTCAGCATACCCTCCAGCTTGTTCGTCCGGGACTCTGTC
TTGTAGAGATTCGTCTGCAGTCGACTGACATCCTGAGCCTGCTTTTCCAG
CGTGCTTAGCCGACTCTTGAGTGTGTCCACCACACTGTAGGTGGCCTGCA
GCGACTTTTGCAGCTCGTTCGTGTGCACTCGCTCATTGGCCAAGGACTTT
TCGATCTTCTGGAGTCGCGTGGCCACCTCCGCGTCCGTATCATCGATATC
GTTCTCCAGATCCCGAGCCTCGAACGCATCGTCCGCATTCGTGGACACCT
TCTTGCAGCTCTGCTGATCCGACTGGAGAACGAATCCCTGACGGCAGCGG
CAGAAGTAAGATCCATGCGTATTGATGCACTGTTGATCGCATGGCTTCTC
CGTCTGGCACTCGTCCACATCCTGCTCGCAGAAACGTCCTGTGAAACCAG
TTGGACAGCTGCAGGTGCTAGGAGCCGTACAATTGCCACCGTTTTGGCAG
CGCGCGGAGCAAATAGGTTTCATGCACGAATCCGACCTTGGGTTTTCCCG
GCTCCATCCCGTGCAGCAGTCGTAGGTCATCTGCTGGGCGGTCTTGTGAT
CGATGACGTCCCTGTAGGCCTGCTCGTGGACCACCTGCACCCTGGTGCAC
TTCTGGCCACTAAAGGTGGGCGGCTGGCAGGGCGTGGCCACGTGCTTCCA
GGTGGGACGACTGTAGACCTCCGTTCGCTTCACGGGCATCGTAACCGTTC
GCTGTTGCATGCAAATGTGCCGCCTTT
BO04709.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 728..1536 | 827..19 | 4045 | 100 | Minus |
CG7447-PB | 1539 | CG7447-RB | 728..1536 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 955..1763 | 827..19 | 4045 | 100 | Minus |
slow-RA | 2364 | CG7447-RA | 1215..2023 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4402225..4402644 | 566..147 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 4401898..4402156 | 825..567 | 1295 | 100 | Minus |
3L | 28110227 | 3L | 4402711..4402840 | 148..19 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:08:16 has no hits.
BO04709.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:40 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 728..1539 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:21 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 728..1539 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:09 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1215..2026 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:20 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 1215..2026 | 15..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:20 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4401896..4402156 | 567..827 | 99 | -> | Minus |
3L | 4402225..4402643 | 148..566 | 100 | -> | Minus |
3L | 4402712..4402843 | 15..147 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:09 Download gff for
BO04709.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4401896..4402156 | 567..827 | 99 | -> | Minus |
arm_3L | 4402225..4402643 | 148..566 | 100 | -> | Minus |
arm_3L | 4402712..4402843 | 15..147 | 98 | | Minus |
BO04709.5prime Sequence
893 bp (847 high quality bases) assembled on 2005-12-01
> BO04709.5prime
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAAAAGTGCACCAGGGTGCAAGGTGGTC
BO04709.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7447-PA | 1539 | CG7447-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
CG7447-PB | 1539 | CG7447-RB | 1..869 | 17..885 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 228..1103 | 17..893 | 4345 | 99.8 | Plus |
slow-RA | 2364 | CG7447-RA | 488..1363 | 17..893 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4390491..4391222 | 17..748 | 3660 | 100 | Plus |
3L | 28110227 | 3L | 4401898..4402037 | 746..885 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:11:23 has no hits.
BO04709.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:41 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:22 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-PB | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:37:12 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1363 | 9..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:46 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 481..1363 | 9..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:46 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4401900..4402044 | 748..893 | 98 | | Plus |
3L | 4390484..4391221 | 9..747 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:37:12 Download gff for
BO04709.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4390484..4391221 | 9..747 | 99 | -> | Plus |
arm_3L | 4401900..4402044 | 748..893 | 98 | | Plus |
BO04709.complete Sequence
1570 bp (1570 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629848
> BO04709.complete
GAAGTTATCAGTCGACATGCCAGAAATGATTTACTCGAGCTCTTTCCTGC
TGCTCTGTTGCACAATCCTGCTGCTGGGAACAGTACAGAATGCCGGTTCC
AATAGCACCAGCCCTCATCCTCACCAGAATCAAACTCATCGCGGACATGG
TCACAGTCATCGAACGCGTCATCAGGGCAACTATTTGGCCACCCATCAAA
GGCAGCAGCGCAGACTGCAGTCGCTGAATCAAGCCAAATCGGATGTGGAG
CTGCTGCCCGGGGTCACCATGCACGAGGTCACCAGATTACGACGGGTTCA
GCCACATAATCCCTACAATAAAGTGCAGACACGACGCCTACACCAATCGC
GAAACCCCACCGAATGGGATTACAATACTTACAACATCATGACCAACACG
TTCGGTCCACCGCCACCGCCGATGCCGTTGTCACCGCGATATGGAAAGGG
CGAGGATAATACCCAGGATGTTGAGTTTATCGGGGTGCGAGAACGTGGAA
GGGGTTACTCATTCGTGCCATCGGTAACGGTCACCACTGCTCCGCCACCG
AATCTGAATCGAAGATCCGCGAGTCCTGGTTCTCGCAGTAGCATCGGCAC
TATTCCACCACTGGTTCCGGCCAGAAGGGGCTATAGCTACACCACCACCA
CAAGTTCTCCTCCAGTGAACACCATCACCACTGACAATCCCTTCGAGACG
AACACCATTGGTCGAGGCTATCCCACAGATCCCAAGGAAATGGAAAGGCG
GCACATTTGCATGCAACAGCGAACGGTTACGATGCCCGTGAAGCGAACGG
AGGTCTACAGTCGTCCCACCTGGAAGCACGTGGCCACGCCCTGCCAGCCG
CCCACCTTTAGTGGCCAGAAGTGCACCAGGGTGCAGGTGGTCCACGAGCA
GGCCTACAGGGACGTCATCGATCACAAGACCGCCCAGCAGATGACCTACG
ACTGCTGCACGGGATGGAGCCGGGAAAACCCAAGGTCGGATTCGTGCATG
AAACCTATTTGCTCCGCGCGCTGCCAAAACGGTGGCAATTGTACGGCTCC
TAGCACCTGCAGCTGTCCAACTGGTTTCACAGGACGTTTCTGCGAGCAGG
ATGTGGACGAGTGCCAGACGGAGAAGCCATGCGATCAACAGTGCATCAAT
ACGCATGGATCTTACTTCTGCCGCTGCCGTCAGGGATTCGTTCTCCAGTC
GGATCAGCAGAGCTGCAAGAAGGTGTCCACGAATGCGGACGATGCGTTCG
AGGCTCGGGATCTGGAGAACGATATCGATGATACGGACGCGGAGGTGGCC
ACGCGACTCCAGAAGATCGAAAAGTCCTTGGCCAATGAGCGAGTGCACAC
GAACGAGCTGCAAAAGTCGCTGCAGGCCACCTACAGTGTGGTGGACACAC
TCAAGAGTCGGCTAAGCACGCTGGAAAAGCAGGCTCAGGATGTCAGTCGA
CTGCAGACGAATCTCTACAAGACAGAGTCCCGGACGAACAAGCTGGAGGG
TATGCTGAACCTGCTGCTGAAGTGCCGGAATGGCCCCAATGCCAATTGCC
CCGCAAGCTTTCTAGACCAT
BO04709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 1539 | CG7447-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
slow-RA | 1539 | CG7447-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-RB | 2104 | CG7447-RB | 228..1763 | 17..1552 | 7680 | 100 | Plus |
slow-RA | 2364 | CG7447-RA | 488..2023 | 17..1552 | 7680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4390491..4391222 | 17..748 | 3660 | 100 | Plus |
3L | 28110227 | 3L | 4402225..4402644 | 1005..1424 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 4401898..4402156 | 746..1004 | 1295 | 100 | Plus |
3L | 28110227 | 3L | 4402711..4402840 | 1423..1552 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:35:50 has no hits.
BO04709.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:49 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-RB | 1..1539 | 17..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:13 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-RB | 215..1750 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 488..2023 | 17..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:49 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7447-RB | 208..1753 | 9..1556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:15 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slow-RA | 488..2023 | 17..1554 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:15 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4390491..4391221 | 17..747 | 100 | -> | Plus |
3L | 4401900..4402156 | 748..1004 | 100 | -> | Plus |
3L | 4402225..4402643 | 1005..1423 | 100 | -> | Plus |
3L | 4402712..4402840 | 1424..1554 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
BO04709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4390491..4391221 | 17..747 | 100 | -> | Plus |
arm_3L | 4401900..4402156 | 748..1004 | 100 | -> | Plus |
arm_3L | 4402225..4402643 | 1005..1423 | 100 | -> | Plus |
arm_3L | 4402712..4402840 | 1424..1554 | 98 | | Plus |
BO04709.pep Sequence
Translation from 16 to 1570
> BO04709.pep
MPEMIYSSSFLLLCCTILLLGTVQNAGSNSTSPHPHQNQTHRGHGHSHRT
RHQGNYLATHQRQQRRLQSLNQAKSDVELLPGVTMHEVTRLRRVQPHNPY
NKVQTRRLHQSRNPTEWDYNTYNIMTNTFGPPPPPMPLSPRYGKGEDNTQ
DVEFIGVRERGRGYSFVPSVTVTTAPPPNLNRRSASPGSRSSIGTIPPLV
PARRGYSYTTTTSSPPVNTITTDNPFETNTIGRGYPTDPKEMERRHICMQ
QRTVTMPVKRTEVYSRPTWKHVATPCQPPTFSGQKCTRVQVVHEQAYRDV
IDHKTAQQMTYDCCTGWSRENPRSDSCMKPICSARCQNGGNCTAPSTCSC
PTGFTGRFCEQDVDECQTEKPCDQQCINTHGSYFCRCRQGFVLQSDQQSC
KKVSTNADDAFEARDLENDIDDTDAEVATRLQKIEKSLANERVHTNELQK
SLQATYSVVDTLKSRLSTLEKQAQDVSRLQTNLYKTESRTNKLEGMLNLL
LKCRNGPNANCPASFLDH
BO04709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slow-PB | 512 | CG7447-PB | 1..512 | 1..512 | 2784 | 100 | Plus |
slow-PA | 512 | CG7447-PA | 1..512 | 1..512 | 2784 | 100 | Plus |
N-PB | 2703 | CG3936-PB | 157..247 | 304..391 | 191 | 42.7 | Plus |
N-PA | 2703 | CG3936-PA | 157..247 | 304..391 | 191 | 42.7 | Plus |
N-PB | 2703 | CG3936-PB | 812..987 | 273..422 | 180 | 29 | Plus |
N-PA | 2703 | CG3936-PA | 812..987 | 273..422 | 180 | 29 | Plus |
N-PB | 2703 | CG3936-PB | 258..380 | 275..404 | 175 | 34.8 | Plus |
N-PA | 2703 | CG3936-PA | 258..380 | 275..404 | 175 | 34.8 | Plus |