Clone BO04710 Report

Search the DGRC for BO04710

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGDI-RA
Protein status:BO04710.pep: validated full length
Sequenced Size:637

Clone Sequence Records

BO04710.3prime Sequence

635 bp (634 high quality bases) assembled on 2006-01-06

> BO04710.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGTCCTTTTTGATCTCAAAGGTCCAGT
CCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGACC
GAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCGT
CAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGCT
TCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTTA
AGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGTA
CTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGGT
CACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGCC
AGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTTT
CTCGGTCTGGGCGGCACCCAGGAGCGCCTCCTTGTAGCGCCGCAAGCTCT
CATCCTCCTGATCGGCGGCCATTATTTCCTCGATGGTCTTCTCCGGCGGC
GCCTGGTAGTTGGCATCGTGGACATCGTCGTCGTGGTGCTCGGGATGGTG
CTTCGTCTCTGTTTCGGCCATGTCGACTGATAACT

BO04710.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 1..603 621..19 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..687 622..19 3020 100 Minus
RhoGDI-RA 1540 CG7823-RA 182..785 622..19 3020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932175 213..19 975 100 Minus
3L 28110227 3L 19930830..19931014 622..438 925 100 Minus
3L 28110227 3L 19931260..19931381 330..209 595 99.2 Minus
3L 28110227 3L 19931087..19931197 438..328 555 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:11:45 has no hits.

BO04710.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:42 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 15..621 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:23 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 15..621 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:08 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..790 11..628 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:13 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..790 11..628 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:13 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19930824..19931014 438..628 98 -> Minus
3L 19931088..19931197 328..437 100 -> Minus
3L 19931263..19931377 213..327 100 -> Minus
3L 19931982..19932180 11..212 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:08 Download gff for BO04710.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923924..19924114 438..628 98 -> Minus
arm_3L 19924188..19924297 328..437 100 -> Minus
arm_3L 19924363..19924477 213..327 100 -> Minus
arm_3L 19925082..19925280 11..212 98   Minus

BO04710.5prime Sequence

635 bp (634 high quality bases) assembled on 2005-12-01

> BO04710.5prime
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCGCAAGCTTTCTAGACC

BO04710.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7823-PA 606 RhoGDI-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..687 16..619 3020 100 Plus
RhoGDI-RA 1540 CG7823-RA 182..785 16..619 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932175 425..619 975 100 Plus
3L 28110227 3L 19930830..19931014 16..200 925 100 Plus
3L 28110227 3L 19931260..19931381 308..429 595 99.2 Plus
3L 28110227 3L 19931087..19931197 200..310 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:47:52 has no hits.

BO04710.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:43 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..623 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:25 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7823-PA 1..606 17..623 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:52 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..790 10..627 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:04 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 176..790 10..627 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:04 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19930824..19931014 10..200 98 -> Plus
3L 19931088..19931197 201..310 100 -> Plus
3L 19931263..19931377 311..425 100 -> Plus
3L 19931982..19932180 426..627 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:52 Download gff for BO04710.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19923924..19924114 10..200 98 -> Plus
arm_3L 19924188..19924297 201..310 100 -> Plus
arm_3L 19924363..19924477 311..425 100 -> Plus
arm_3L 19925082..19925280 426..627 98   Plus

BO04710.complete Sequence

637 bp (637 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629849

> BO04710.complete
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCGCAAGCTTTCTAGACCAT

BO04710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 606 CG7823-PB 1..603 17..619 3015 100 Plus
RhoGDI-RA 606 CG7823-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-RB 1442 CG7823-RB 84..687 16..619 3020 100 Plus
RhoGDI-RA 1540 CG7823-RA 182..785 16..619 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19931981..19932175 425..619 975 100 Plus
3L 28110227 3L 19930830..19931014 16..200 925 100 Plus
3L 28110227 3L 19931260..19931381 308..429 595 99.2 Plus
3L 28110227 3L 19931087..19931197 200..310 555 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:11:41 has no hits.

BO04710.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:52 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 1..606 17..623 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:48 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 112..726 10..627 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:33 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 183..785 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:52 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 112..726 10..627 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:18 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGDI-RA 183..785 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:18 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19931263..19931377 311..425 100 -> Plus
3L 19931088..19931197 201..310 100 -> Plus
3L 19931982..19932175 426..621 98   Plus
3L 19930831..19931014 17..200 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:33 Download gff for BO04710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19924188..19924297 201..310 100 -> Plus
arm_3L 19924363..19924477 311..425 100 -> Plus
arm_3L 19925082..19925275 426..621 98   Plus
arm_3L 19923931..19924114 17..200 100 -> Plus

BO04710.pep Sequence

Translation from 16 to 637

> BO04710.pep
MAETETKHHPEHHDDDVHDANYQAPPEKTIEEIMAADQEDESLRRYKEAL
LGAAQTEKIIVEPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLF
VIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKHMVGSYPPK
KEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW
AASFLDH

BO04710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGDI-PB 201 CG7823-PB 1..201 1..201 1054 100 Plus
RhoGDI-PA 201 CG7823-PA 1..201 1..201 1054 100 Plus