Clone Sequence Records
BO04710.3prime Sequence
635 bp (634 high quality bases) assembled on 2006-01-06
> BO04710.3prime
ATGGTCTAGAAAGCTTGCGGCCCAGTCCTTTTTGATCTCAAAGGTCCAGT
CCCACTCCAGGTGTATGTGCTTGTCGTCATCCGTGAAGACCGAACTGACC
GAGTAGGTGCCGCGGGAGAATGTGCCTGAAGGTGCCTCCTCGGCGGGCGT
CAAATAGAACTGAATCTCCTTCTTCGGCGGATAGGAGCCAACCATATGCT
TCATCTTGTCAACATTAACACCCAAGCGAGAAGTCTTTTGAACATACTTA
AGGCCATGGACTATTTCACGCTGCACAATAAAATCAATGCGCACCTTGTA
CTGAACACCTTCTTTGATCACAAAAAGCTGCTTTTTCAGCTGACTAAGGT
CACCGGTAAGATCCAATTCCATGTCGTCGCGTCCTTCGACAACGAGGGCC
AGTTTCTTTACAATAACTTTTCGGGGATCATTGGGTTCAACAATAATTTT
CTCGGTCTGGGCGGCACCCAGGAGCGCCTCCTTGTAGCGCCGCAAGCTCT
CATCCTCCTGATCGGCGGCCATTATTTCCTCGATGGTCTTCTCCGGCGGC
GCCTGGTAGTTGGCATCGTGGACATCGTCGTCGTGGTGCTCGGGATGGTG
CTTCGTCTCTGTTTCGGCCATGTCGACTGATAACT
BO04710.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 1..603 | 621..19 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..687 | 622..19 | 3020 | 100 | Minus |
RhoGDI-RA | 1540 | CG7823-RA | 182..785 | 622..19 | 3020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932175 | 213..19 | 975 | 100 | Minus |
3L | 28110227 | 3L | 19930830..19931014 | 622..438 | 925 | 100 | Minus |
3L | 28110227 | 3L | 19931260..19931381 | 330..209 | 595 | 99.2 | Minus |
3L | 28110227 | 3L | 19931087..19931197 | 438..328 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:11:45 has no hits.
BO04710.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:42 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 15..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:23 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 15..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:35:08 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..790 | 11..628 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:34:13 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..790 | 11..628 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:34:13 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930824..19931014 | 438..628 | 98 | -> | Minus |
3L | 19931088..19931197 | 328..437 | 100 | -> | Minus |
3L | 19931263..19931377 | 213..327 | 100 | -> | Minus |
3L | 19931982..19932180 | 11..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:35:08 Download gff for
BO04710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923924..19924114 | 438..628 | 98 | -> | Minus |
arm_3L | 19924188..19924297 | 328..437 | 100 | -> | Minus |
arm_3L | 19924363..19924477 | 213..327 | 100 | -> | Minus |
arm_3L | 19925082..19925280 | 11..212 | 98 | | Minus |
BO04710.5prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-01
> BO04710.5prime
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCGCAAGCTTTCTAGACC
BO04710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7823-PA | 606 | RhoGDI-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..687 | 16..619 | 3020 | 100 | Plus |
RhoGDI-RA | 1540 | CG7823-RA | 182..785 | 16..619 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932175 | 425..619 | 975 | 100 | Plus |
3L | 28110227 | 3L | 19930830..19931014 | 16..200 | 925 | 100 | Plus |
3L | 28110227 | 3L | 19931260..19931381 | 308..429 | 595 | 99.2 | Plus |
3L | 28110227 | 3L | 19931087..19931197 | 200..310 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:47:52 has no hits.
BO04710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:43 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:25 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7823-PA | 1..606 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:42:52 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..790 | 10..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:04 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 176..790 | 10..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:04 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19930824..19931014 | 10..200 | 98 | -> | Plus |
3L | 19931088..19931197 | 201..310 | 100 | -> | Plus |
3L | 19931263..19931377 | 311..425 | 100 | -> | Plus |
3L | 19931982..19932180 | 426..627 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:42:52 Download gff for
BO04710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19923924..19924114 | 10..200 | 98 | -> | Plus |
arm_3L | 19924188..19924297 | 201..310 | 100 | -> | Plus |
arm_3L | 19924363..19924477 | 311..425 | 100 | -> | Plus |
arm_3L | 19925082..19925280 | 426..627 | 98 | | Plus |
BO04710.complete Sequence
637 bp (637 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629849
> BO04710.complete
GAAGTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGC
ACCACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAG
ACCATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCG
CTACAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTG
AACCCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTC
GAAGGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCT
GAAAAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCA
TTGATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAA
AAGACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGG
CTCCTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGG
AGGCACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTCGGTC
TTCACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTGA
GATCAAAAAGGACTGGGCCGCAAGCTTTCTAGACCAT
BO04710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 606 | CG7823-PB | 1..603 | 17..619 | 3015 | 100 | Plus |
RhoGDI-RA | 606 | CG7823-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-RB | 1442 | CG7823-RB | 84..687 | 16..619 | 3020 | 100 | Plus |
RhoGDI-RA | 1540 | CG7823-RA | 182..785 | 16..619 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19931981..19932175 | 425..619 | 975 | 100 | Plus |
3L | 28110227 | 3L | 19930830..19931014 | 16..200 | 925 | 100 | Plus |
3L | 28110227 | 3L | 19931260..19931381 | 308..429 | 595 | 99.2 | Plus |
3L | 28110227 | 3L | 19931087..19931197 | 200..310 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:41 has no hits.
BO04710.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:52 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 1..606 | 17..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:48 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 112..726 | 10..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:33 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 183..785 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:52 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 112..726 | 10..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:18 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGDI-RA | 183..785 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:18 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19931263..19931377 | 311..425 | 100 | -> | Plus |
3L | 19931088..19931197 | 201..310 | 100 | -> | Plus |
3L | 19931982..19932175 | 426..621 | 98 | | Plus |
3L | 19930831..19931014 | 17..200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:33 Download gff for
BO04710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19924188..19924297 | 201..310 | 100 | -> | Plus |
arm_3L | 19924363..19924477 | 311..425 | 100 | -> | Plus |
arm_3L | 19925082..19925275 | 426..621 | 98 | | Plus |
arm_3L | 19923931..19924114 | 17..200 | 100 | -> | Plus |
BO04710.pep Sequence
Translation from 16 to 637
> BO04710.pep
MAETETKHHPEHHDDDVHDANYQAPPEKTIEEIMAADQEDESLRRYKEAL
LGAAQTEKIIVEPNDPRKVIVKKLALVVEGRDDMELDLTGDLSQLKKQLF
VIKEGVQYKVRIDFIVQREIVHGLKYVQKTSRLGVNVDKMKHMVGSYPPK
KEIQFYLTPAEEAPSGTFSRGTYSVSSVFTDDDKHIHLEWDWTFEIKKDW
AASFLDH
BO04710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGDI-PB | 201 | CG7823-PB | 1..201 | 1..201 | 1054 | 100 | Plus |
RhoGDI-PA | 201 | CG7823-PA | 1..201 | 1..201 | 1054 | 100 | Plus |