Clone Sequence Records
BO04715.3prime Sequence
948 bp (755 high quality bases) assembled on 2005-12-01
> BO04715.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCTTCTCCTTCTCTATTGCGGCGGCGA
TTCCGTCGCCACCAGCTGCTTTCTCTGCCGCGCGCTTCTTTCTACGTTCG
GCCGCTTTTCTCTGGCTGGTGAGGTAAAAGCCTAACGCAGTCATGGCCGC
CCAACTGATGTAGCCAATATGATAGACAGAGCTATAGAACCGCCAGATGT
TGCCAAAGGAGGAGAGCAGGAAGGCCTCGCCCAAGTAGCTGAAGGCGAAC
CACTTAAAGATCCAGAAGATGACATCGATTACCCTGCGGCTGGTGCCGGT
GGCACTCTTGCGCACCAGCTTATCCCACATGTCCTCCAGGGAGACGTAGA
AGGGAGCGCCCATGATGCAGAAGTAGTGTCCCGGCCGGAATCCGTGCCAG
TAGGCAGAGCACAGCAAAGTGGCGCCAGTCCTGTACTTTTTGCTGGGGAA
GAGTTTGTACACATTGACAGCCAACCAATACTGGACGCACACATTCCAGT
GCTTCATGCCCTCGCGGAAGGTCCAGCATCTTTCCACCTCCAGAACCCTG
GTGTTCACGATCGTTGTAAAGTTGTAGGTGTGCTTATCGGCGTCGCGCTT
TAGGTGCTGATAGCGTTTCCGAGGGCCCTCGCCATTGTTGGGATCGGATT
CATCCGGATAGGCTCCGAAGCCGGCCATTGTGCAGACACATTCGCTGAGG
GTGAGTCCGGTGTAGATGCGAGCGCGGAATGTGAAGAACGTGGGCCACAC
GTACAGCAAACGGTACACAAAGGAGCGATCGTTGAAGAACTCATCACTCA
ACGCATAATCCAGTGGCCACATGTAGTTGGTTGCCAGGTATAATGCGCAG
TAGAAGACGGCGTACTTCAGCTTCTCCAGGGTGGCTTCAACAGTTGGAGC
GTAGGTCTTGAAAGGCATCTCAAAGTAGTCCCTGTATGTGCGATACCG
BO04715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9526-PB | 1470 | CG9526-RB | 538..1467 | 948..19 | 4650 | 100 | Minus |
CG9526-PA | 1470 | CG9526-RA | 538..1467 | 948..19 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 742..1671 | 948..19 | 4650 | 100 | Minus |
frj-RB | 2156 | CG9526-RB | 801..1730 | 948..19 | 4650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6458169..6458582 | 432..19 | 2070 | 100 | Minus |
2L | 23513712 | 2L | 6457540..6457917 | 807..430 | 1890 | 100 | Minus |
2L | 23513712 | 2L | 6457349..6457489 | 948..808 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:39:20 has no hits.
BO04715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:46 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PB | 538..1470 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:28 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PA | 538..1470 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:37 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 801..1730 | 19..948 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:28 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 801..1730 | 19..948 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:28 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6457349..6457489 | 808..948 | 100 | -> | Minus |
2L | 6457540..6457916 | 431..807 | 100 | -> | Minus |
2L | 6458171..6458582 | 19..430 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:37 Download gff for
BO04715.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6457349..6457489 | 808..948 | 100 | -> | Minus |
arm_2L | 6457540..6457916 | 431..807 | 100 | -> | Minus |
arm_2L | 6458171..6458582 | 19..430 | 100 | | Minus |
BO04715.5prime Sequence
880 bp (831 high quality bases) assembled on 2005-11-29
> BO04715.5prime
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCGGGAT
GAATCCGATCCCACAATGGCGAGGGCCCTC
BO04715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9526-PB | 1470 | CG9526-RB | 1..847 | 17..863 | 4210 | 99.8 | Plus |
CG9526-PA | 1470 | CG9526-RA | 1..847 | 17..863 | 4210 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 205..1069 | 17..880 | 4285 | 99.8 | Plus |
frj-RB | 2156 | CG9526-RB | 264..1128 | 17..880 | 4285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6456471..6456682 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 6456919..6457115 | 348..544 | 985 | 100 | Plus |
2L | 23513712 | 2L | 6457540..6457726 | 695..880 | 870 | 98.9 | Plus |
2L | 23513712 | 2L | 6457335..6457489 | 540..694 | 775 | 100 | Plus |
2L | 23513712 | 2L | 6456742..6456866 | 227..351 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:38:43 has no hits.
BO04715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:47 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PB | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:29 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:56 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 260..1128 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:25 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 260..1128 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:25 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6456467..6456682 | 9..228 | 98 | -> | Plus |
2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
2L | 6457540..6457726 | 695..880 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:56 Download gff for
BO04715.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
arm_2L | 6457540..6457726 | 695..880 | 98 | | Plus |
arm_2L | 6456467..6456682 | 9..228 | 98 | -> | Plus |
arm_2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
arm_2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
BO04715.complete Sequence
1501 bp (1501 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629850
> BO04715.complete
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCCGGAT
GAATCCGATCCCAACAATGGCGAGGGCCCTCGGAAACGCTATCAGCACCT
AAAGCGCGACGCCGATAAGCACACCTACAACTTTACAACGATCGTGAACA
CCAGGGTTCTGGAGGTGGAAAGATGCTGGACCTTCCGCGAGGGCATGAAG
CACTGGAATGTGTGCGTCCAGTATTGGTTGGCTGTCAATGTGTACAAACT
CTTCCCCAGCAAAAAGTACAGGACTGGCGCCACTTTGCTGTGCTCTGCCT
ACTGGCACGGATTCCGGCCGGGACACTACTTCTGCATCATGGGCGCTCCC
TTCTACGTCTCCCTGGAGGACATGTGGGATAAGCTGGTGCGCAAGAGTGC
CACCGGCACCAGCCGCAGGGTAATCGATGTCATCTTCTGGATCTTTAAGT
GGTTCGCCTTCAGCTACTTGGGCGAGGCCTTCCTGCTCTCCTCCTTTGGC
AACATCTGGCGGTTCTATAGCTCTGTCTATCATATTGGCTACATCAGTTG
GGCGGCCATGACTGCGTTAGGCTTTTACCTCACCAGCCAGAGAAAAGCGG
CCGAACGTAGAAAGAAGCGCGCGGCAGAGAAAGCAGCTGGTGGCGACGGA
ATCGCCGCCGCAATAGAGAAGGAGAAGGCGCAGGCAAGCTTTCTAGACCA
T
BO04715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 1470 | CG9526-PA | 1..1467 | 17..1483 | 7335 | 100 | Plus |
frj-RB | 1470 | CG9526-PB | 1..1467 | 17..1483 | 7335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 205..1671 | 17..1483 | 7335 | 100 | Plus |
frj-RB | 2156 | CG9526-RB | 264..1730 | 17..1483 | 7335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6458169..6458582 | 1070..1483 | 2070 | 100 | Plus |
2L | 23513712 | 2L | 6457540..6457917 | 695..1072 | 1890 | 100 | Plus |
2L | 23513712 | 2L | 6456471..6456682 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 6456919..6457115 | 348..544 | 985 | 100 | Plus |
2L | 23513712 | 2L | 6457335..6457489 | 540..694 | 775 | 100 | Plus |
2L | 23513712 | 2L | 6456742..6456866 | 227..351 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:15:11 has no hits.
BO04715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:34 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 1..1470 | 17..1484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:25 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 174..1644 | 9..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:13 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 264..1730 | 17..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:35 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 174..1644 | 9..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:21 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 264..1730 | 17..1485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:21 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
2L | 6456471..6456682 | 17..228 | 100 | -> | Plus |
2L | 6457540..6457916 | 695..1071 | 100 | -> | Plus |
2L | 6458171..6458582 | 1072..1485 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:13 Download gff for
BO04715.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
arm_2L | 6456471..6456682 | 17..228 | 100 | -> | Plus |
arm_2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
arm_2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
arm_2L | 6457540..6457916 | 695..1071 | 100 | -> | Plus |
arm_2L | 6458171..6458582 | 1072..1485 | 99 | | Plus |
BO04715.pep Sequence
Translation from 16 to 1501
> BO04715.pep
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQASFLDH
BO04715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-PA | 489 | CG9526-PA | 1..489 | 1..489 | 2622 | 100 | Plus |
frj-PB | 489 | CG9526-PB | 1..489 | 1..489 | 2622 | 100 | Plus |
oys-PE | 722 | CG18445-PE | 28..511 | 1..488 | 218 | 20.5 | Plus |
oys-PB | 722 | CG18445-PB | 28..511 | 1..488 | 218 | 20.5 | Plus |
oys-PA | 722 | CG18445-PA | 28..511 | 1..488 | 218 | 20.5 | Plus |