Clone BO04715 Report

Search the DGRC for BO04715

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:47
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptfrj-RA
Protein status:BO04715.pep: validated full length
Sequenced Size:1501

Clone Sequence Records

BO04715.3prime Sequence

948 bp (755 high quality bases) assembled on 2005-12-01

> BO04715.3prime
ATGGTCTAGAAAGCTTGCCTGCGCCTTCTCCTTCTCTATTGCGGCGGCGA
TTCCGTCGCCACCAGCTGCTTTCTCTGCCGCGCGCTTCTTTCTACGTTCG
GCCGCTTTTCTCTGGCTGGTGAGGTAAAAGCCTAACGCAGTCATGGCCGC
CCAACTGATGTAGCCAATATGATAGACAGAGCTATAGAACCGCCAGATGT
TGCCAAAGGAGGAGAGCAGGAAGGCCTCGCCCAAGTAGCTGAAGGCGAAC
CACTTAAAGATCCAGAAGATGACATCGATTACCCTGCGGCTGGTGCCGGT
GGCACTCTTGCGCACCAGCTTATCCCACATGTCCTCCAGGGAGACGTAGA
AGGGAGCGCCCATGATGCAGAAGTAGTGTCCCGGCCGGAATCCGTGCCAG
TAGGCAGAGCACAGCAAAGTGGCGCCAGTCCTGTACTTTTTGCTGGGGAA
GAGTTTGTACACATTGACAGCCAACCAATACTGGACGCACACATTCCAGT
GCTTCATGCCCTCGCGGAAGGTCCAGCATCTTTCCACCTCCAGAACCCTG
GTGTTCACGATCGTTGTAAAGTTGTAGGTGTGCTTATCGGCGTCGCGCTT
TAGGTGCTGATAGCGTTTCCGAGGGCCCTCGCCATTGTTGGGATCGGATT
CATCCGGATAGGCTCCGAAGCCGGCCATTGTGCAGACACATTCGCTGAGG
GTGAGTCCGGTGTAGATGCGAGCGCGGAATGTGAAGAACGTGGGCCACAC
GTACAGCAAACGGTACACAAAGGAGCGATCGTTGAAGAACTCATCACTCA
ACGCATAATCCAGTGGCCACATGTAGTTGGTTGCCAGGTATAATGCGCAG
TAGAAGACGGCGTACTTCAGCTTCTCCAGGGTGGCTTCAACAGTTGGAGC
GTAGGTCTTGAAAGGCATCTCAAAGTAGTCCCTGTATGTGCGATACCG

BO04715.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9526-PB 1470 CG9526-RB 538..1467 948..19 4650 100 Minus
CG9526-PA 1470 CG9526-RA 538..1467 948..19 4650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 742..1671 948..19 4650 100 Minus
frj-RB 2156 CG9526-RB 801..1730 948..19 4650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6458582 432..19 2070 100 Minus
2L 23513712 2L 6457540..6457917 807..430 1890 100 Minus
2L 23513712 2L 6457349..6457489 948..808 705 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:39:20 has no hits.

BO04715.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:46 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PB 538..1470 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:28 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PA 538..1470 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:59:37 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 801..1730 19..948 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:13:28 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 801..1730 19..948 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:13:28 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6457349..6457489 808..948 100 -> Minus
2L 6457540..6457916 431..807 100 -> Minus
2L 6458171..6458582 19..430 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:59:37 Download gff for BO04715.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6457349..6457489 808..948 100 -> Minus
arm_2L 6457540..6457916 431..807 100 -> Minus
arm_2L 6458171..6458582 19..430 100   Minus

BO04715.5prime Sequence

880 bp (831 high quality bases) assembled on 2005-11-29

> BO04715.5prime
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCGGGAT
GAATCCGATCCCACAATGGCGAGGGCCCTC

BO04715.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9526-PB 1470 CG9526-RB 1..847 17..863 4210 99.8 Plus
CG9526-PA 1470 CG9526-RA 1..847 17..863 4210 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 205..1069 17..880 4285 99.8 Plus
frj-RB 2156 CG9526-RB 264..1128 17..880 4285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6456471..6456682 17..228 1060 100 Plus
2L 23513712 2L 6456919..6457115 348..544 985 100 Plus
2L 23513712 2L 6457540..6457726 695..880 870 98.9 Plus
2L 23513712 2L 6457335..6457489 540..694 775 100 Plus
2L 23513712 2L 6456742..6456866 227..351 625 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:38:43 has no hits.

BO04715.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:47 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PB 1..865 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:29 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PA 1..865 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:54:56 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 260..1128 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:25 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 260..1128 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:25 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6456467..6456682 9..228 98 -> Plus
2L 6456744..6456864 229..349 100 -> Plus
2L 6456921..6457113 350..542 100 -> Plus
2L 6457338..6457489 543..694 100 -> Plus
2L 6457540..6457726 695..880 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:54:56 Download gff for BO04715.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6457338..6457489 543..694 100 -> Plus
arm_2L 6457540..6457726 695..880 98   Plus
arm_2L 6456467..6456682 9..228 98 -> Plus
arm_2L 6456744..6456864 229..349 100 -> Plus
arm_2L 6456921..6457113 350..542 100 -> Plus

BO04715.complete Sequence

1501 bp (1501 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629850

> BO04715.complete
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCCGGAT
GAATCCGATCCCAACAATGGCGAGGGCCCTCGGAAACGCTATCAGCACCT
AAAGCGCGACGCCGATAAGCACACCTACAACTTTACAACGATCGTGAACA
CCAGGGTTCTGGAGGTGGAAAGATGCTGGACCTTCCGCGAGGGCATGAAG
CACTGGAATGTGTGCGTCCAGTATTGGTTGGCTGTCAATGTGTACAAACT
CTTCCCCAGCAAAAAGTACAGGACTGGCGCCACTTTGCTGTGCTCTGCCT
ACTGGCACGGATTCCGGCCGGGACACTACTTCTGCATCATGGGCGCTCCC
TTCTACGTCTCCCTGGAGGACATGTGGGATAAGCTGGTGCGCAAGAGTGC
CACCGGCACCAGCCGCAGGGTAATCGATGTCATCTTCTGGATCTTTAAGT
GGTTCGCCTTCAGCTACTTGGGCGAGGCCTTCCTGCTCTCCTCCTTTGGC
AACATCTGGCGGTTCTATAGCTCTGTCTATCATATTGGCTACATCAGTTG
GGCGGCCATGACTGCGTTAGGCTTTTACCTCACCAGCCAGAGAAAAGCGG
CCGAACGTAGAAAGAAGCGCGCGGCAGAGAAAGCAGCTGGTGGCGACGGA
ATCGCCGCCGCAATAGAGAAGGAGAAGGCGCAGGCAAGCTTTCTAGACCA
T

BO04715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 1470 CG9526-PA 1..1467 17..1483 7335 100 Plus
frj-RB 1470 CG9526-PB 1..1467 17..1483 7335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 205..1671 17..1483 7335 100 Plus
frj-RB 2156 CG9526-RB 264..1730 17..1483 7335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6458582 1070..1483 2070 100 Plus
2L 23513712 2L 6457540..6457917 695..1072 1890 100 Plus
2L 23513712 2L 6456471..6456682 17..228 1060 100 Plus
2L 23513712 2L 6456919..6457115 348..544 985 100 Plus
2L 23513712 2L 6457335..6457489 540..694 775 100 Plus
2L 23513712 2L 6456742..6456866 227..351 625 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:15:11 has no hits.

BO04715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:34 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..1470 17..1484 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:25 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 174..1644 9..1483 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:13 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 264..1730 17..1485 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:35 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 174..1644 9..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:21 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 264..1730 17..1485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:21 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6456744..6456864 229..349 100 -> Plus
2L 6456921..6457113 350..542 100 -> Plus
2L 6457338..6457489 543..694 100 -> Plus
2L 6456471..6456682 17..228 100 -> Plus
2L 6457540..6457916 695..1071 100 -> Plus
2L 6458171..6458582 1072..1485 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:13 Download gff for BO04715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6457338..6457489 543..694 100 -> Plus
arm_2L 6456471..6456682 17..228 100 -> Plus
arm_2L 6456744..6456864 229..349 100 -> Plus
arm_2L 6456921..6457113 350..542 100 -> Plus
arm_2L 6457540..6457916 695..1071 100 -> Plus
arm_2L 6458171..6458582 1072..1485 99   Plus

BO04715.pep Sequence

Translation from 16 to 1501

> BO04715.pep
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQASFLDH

BO04715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
frj-PA 489 CG9526-PA 1..489 1..489 2622 100 Plus
frj-PB 489 CG9526-PB 1..489 1..489 2622 100 Plus
oys-PE 722 CG18445-PE 28..511 1..488 218 20.5 Plus
oys-PB 722 CG18445-PB 28..511 1..488 218 20.5 Plus
oys-PA 722 CG18445-PA 28..511 1..488 218 20.5 Plus