Clone Sequence Records
BO04721.3prime Sequence
788 bp (787 high quality bases) assembled on 2005-12-01
> BO04721.3prime
ATGGTCTAGAAAGCTTGCATAATTCTTTCGTCCCGTTTGCTGCAGGTCCA
GTTTGTTCAGCAGATCGTCAAACTCGCTGAAGAGATGGGTTGTGCCATAG
CTGTCCACATAGGTCTTGCTGCCCCTGGAGGTTTTCTTGAAAGCGGGCAG
CACCGGACTGTGACCATGCAGAAGATTCACATTCTGATAAGACTGCGCCT
TGGCCGAACCGGCCAATGGATGCGACTGACTCTTGCCAACCGTGGGCGCC
AGTTCCAGAAAATTGGGCGCCTTCTTTGGCTGCAACTTGACCTGGTTGAG
CAGCGGATTGTGCAACTGAAGCTGCCGGTAGATGGGCAGGGCGTGCTTCG
GTGGCACCACCACGTGCTGGCGGCCCACCGCCTGCGGGTACAGGTACGTG
GTCTCCACCGTTGGCACCTGGCGGTAGTGGTATCGTCCCTCCCGCGGCGT
ATACCTCCCATCCGAGCTCAGGGCGATGTGGAAGACGGTGCGCATGGGCT
TGCTGTAGTACTGATACACCTGCGGATTCCGCTGCTCGGGAACTATCCCA
TCTGGCACTGCGATGCCCTCCTTCTGCAGGCGATTCAAAAACAATCGATC
CGTCTCAAAGGCGGTGTCGGGTATCTTACCACCCGCATGTGGCAATACTT
GTTCCCGATAGATTTGGCGTTTCTTGTGGTTGCGCTCAGCAAACTCCGAG
CCTTGGGCAATTATGAATGGGCCCACGCAAAGATATAGTANACCGATCAG
CAAGATCACATATGGCGTAGACATGTCGACTGATAACT
BO04721.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 1..756 | 774..19 | 3761 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1172 | 774..19 | 3769 | 99.9 | Minus |
CG32037-RA | 1540 | CG32037-RA | 417..1172 | 774..19 | 3769 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 270..522 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 9490323..9490508 | 85..270 | 930 | 100 | Plus |
3L | 28110227 | 3L | 9491472..9491630 | 518..676 | 795 | 100 | Plus |
3L | 28110227 | 3L | 9491698..9491799 | 673..774 | 499 | 99 | Plus |
3L | 28110227 | 3L | 9490166..9490231 | 19..84 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:37:47 has no hits.
BO04721.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:52 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:36 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 18..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:34:11 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 10..782 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:29 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 10..782 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:29 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490566..9490815 | 270..519 | 100 | <- | Plus |
3L | 9491474..9491626 | 520..672 | 100 | <- | Plus |
3L | 9491698..9491808 | 673..782 | 96 | | Plus |
3L | 9490159..9490231 | 10..84 | 94 | <- | Plus |
3L | 9490323..9490507 | 85..269 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:34:11 Download gff for
BO04721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9483259..9483331 | 10..84 | 94 | <- | Plus |
arm_3L | 9483423..9483607 | 85..269 | 100 | <- | Plus |
arm_3L | 9483666..9483915 | 270..519 | 100 | <- | Plus |
arm_3L | 9484574..9484726 | 520..672 | 100 | <- | Plus |
arm_3L | 9484798..9484908 | 673..782 | 96 | | Plus |
BO04721.5prime Sequence
788 bp (750 high quality bases) assembled on 2005-12-01
> BO04721.5prime
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATGCAAGCTTTCTAGACC
BO04721.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PA | 759 | CG32037-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1172 | 17..772 | 3780 | 100 | Plus |
CG32037-RA | 1540 | CG32037-RA | 417..1172 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 521..269 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 9490323..9490508 | 706..521 | 930 | 100 | Minus |
3L | 28110227 | 3L | 9491472..9491630 | 273..115 | 795 | 100 | Minus |
3L | 28110227 | 3L | 9491698..9491799 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9490166..9490231 | 772..707 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:30:31 has no hits.
BO04721.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:53 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:38 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-PA | 1..759 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:48 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:42:43 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 408..1178 | 9..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:42:43 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490159..9490231 | 707..781 | 94 | <- | Minus |
3L | 9490323..9490507 | 522..706 | 100 | <- | Minus |
3L | 9490566..9490815 | 272..521 | 100 | <- | Minus |
3L | 9491474..9491626 | 119..271 | 100 | <- | Minus |
3L | 9491698..9491808 | 9..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:48 Download gff for
BO04721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9483259..9483331 | 707..781 | 94 | <- | Minus |
arm_3L | 9483423..9483607 | 522..706 | 100 | <- | Minus |
arm_3L | 9483666..9483915 | 272..521 | 100 | <- | Minus |
arm_3L | 9484574..9484726 | 119..271 | 100 | <- | Minus |
arm_3L | 9484798..9484908 | 9..118 | 97 | | Minus |
BO04721.complete Sequence
790 bp (790 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629851
> BO04721.complete
GAAGTTATCAGTCGACATGTCTACGCCATATGTGATCTTGCTGATCGGTT
TACTATATCTTTGCGTGGGCCCATTCATAATTGCCCAAGGCTCGGAGTTT
GCTGAGCGCAACCACAAGAAACGCCAAATCTATCGGGAACAAGTATTGCC
ACATGCGGGTGGTAAGATACCCGACACCGCCTTTGAGACGGATCGATTGT
TTTTGAATCGCCTGCAGAAGGAGGGCATCGCAGTGCCAGATGGGATAGTT
CCCGAGCAGCGGAATCCGCAGGTGTATCAGTACTACAGCAAGCCCATGCG
CACCGTCTTCCACATCGCCCTGAGCTCGGATGGGAGGTATACGCCGCGGG
AGGGACGATACCACTACCGCCAGGTGCCAACGGTGGAGACCACGTACCTG
TACCCGCAGGCGGTGGGCCGCCAGCACGTGGTGGTGCCACCGAAGCACGC
CCTGCCCATCTACCGGCAGCTTCAGTTGCACAATCCGCTGCTCAACCAGG
TCAAGTTGCAGCCAAAGAAGGCGCCCAATTTTCTGGAACTGGCGCCCACG
GTTGGCAAGAGTCAGTCGCATCCATTGGCCGGTTCGGCCAAGGCGCAGTC
TTATCAGAATGTGAATCTTCTGCATGGTCACAGTCCGGTGCTGCCCGCTT
TCAAGAAAACCTCCAGGGGCAGCAAGACCTATGTGGACAGCTATGGCACA
ACCCATCTCTTCAGCGAGTTTGACGATCTGCTGAACAAACTGGACCTGCA
GCAAACGGGACGAAAGAATTATGCAAGCTTTCTAGACCAT
BO04721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 759 | CG32037-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
CG32037-RA | 759 | CG32037-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-RB | 1836 | CG32037-RB | 417..1172 | 17..772 | 3780 | 100 | Plus |
CG32037-RA | 1540 | CG32037-RA | 417..1172 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9490566..9490818 | 521..269 | 1265 | 100 | Minus |
3L | 28110227 | 3L | 9490323..9490508 | 706..521 | 930 | 100 | Minus |
3L | 28110227 | 3L | 9491472..9491630 | 273..115 | 795 | 100 | Minus |
3L | 28110227 | 3L | 9491698..9491799 | 118..17 | 510 | 100 | Minus |
3L | 28110227 | 3L | 9490166..9490231 | 772..707 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:45 has no hits.
BO04721.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:36 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 1..759 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:27 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 387..1157 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:09 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 417..1172 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:36 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 387..1157 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:10 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32037-RA | 417..1172 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:10 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9490164..9490231 | 707..774 | 97 | <- | Minus |
3L | 9490323..9490507 | 522..706 | 100 | <- | Minus |
3L | 9490566..9490815 | 272..521 | 100 | <- | Minus |
3L | 9491474..9491626 | 119..271 | 100 | <- | Minus |
3L | 9491698..9491799 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:09 Download gff for
BO04721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9484574..9484726 | 119..271 | 100 | <- | Minus |
arm_3L | 9484798..9484899 | 17..118 | 100 | | Minus |
arm_3L | 9483264..9483331 | 707..774 | 97 | <- | Minus |
arm_3L | 9483423..9483607 | 522..706 | 100 | <- | Minus |
arm_3L | 9483666..9483915 | 272..521 | 100 | <- | Minus |
BO04721.pep Sequence
Translation from 16 to 790
> BO04721.pep
MSTPYVILLIGLLYLCVGPFIIAQGSEFAERNHKKRQIYREQVLPHAGGK
IPDTAFETDRLFLNRLQKEGIAVPDGIVPEQRNPQVYQYYSKPMRTVFHI
ALSSDGRYTPREGRYHYRQVPTVETTYLYPQAVGRQHVVVPPKHALPIYR
QLQLHNPLLNQVKLQPKKAPNFLELAPTVGKSQSHPLAGSAKAQSYQNVN
LLHGHSPVLPAFKKTSRGSKTYVDSYGTTHLFSEFDDLLNKLDLQQTGRK
NYASFLDH
BO04721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32037-PB | 252 | CG32037-PB | 1..252 | 1..252 | 1330 | 100 | Plus |
CG32037-PA | 252 | CG32037-PA | 1..252 | 1..252 | 1330 | 100 | Plus |