Clone Sequence Records
BO04723.3prime Sequence
924 bp (793 high quality bases) assembled on 2005-12-01
> BO04723.3prime
ATGGTCTAGAAAGCTTGCGTTTTTCTCAATAGCTTCTTTTGGTGGCTCCC
ACCTATCCAAGAGCTCCTTTAGTCGTTCCCTTCGATGTTCCAGTTGCAAC
TTCTCTATTAGTCCACTCAGTTGGTCGCCGCCCTTGAGGAAACCATTGAG
GTTGTGCAGCGTACCGCCTTGAATTCGATGATCCGTTATGCGGTCCTGGA
CGAAATTGTAGGTACGGATCTTCTCATTGCGATTGAGACTACCCTGTTGC
GCCTTCTTGGTGGCCATTTTGCTAGCCTCAACGCTCTCCAACTGCTGTTG
CACAAGTCGCGACCGTAGACGCTTCATCGCTAGCTCCCGGTTTTTGAGCT
GGGAGCGTTCCGATTGCGCCTCCACCGCCAGACCCGTGGGCAGATGAACA
ATTCTTACAGCCGAGTCGGTGGTGTTAACATGCTGTCCACCAGCTCCACT
CGCTCGCTTCGTCTCGATCTTCAGATCCTTCTCAGCGATGTGCACTTGGA
TGTCGGCGGGTCGGGGAATCACTGTAATTGAGGCGGTGCTGGTGTGCATG
CGTCCAGACTTTTCAGTGGCCGGCACCCGCTGTACGCGGTGAACTCCAGC
CTCATAGCGCAGCCAGCGGAAGGCATCCTCGCCGCTCACCATCAGACTAG
CGTGCCGCAGACCCCCGATGTCGGTGCCCTCGCTGGCAAACTCCTCCCAC
TCCCAGCCCATGTGCTCGAAATAGCCGGTGTACATTTCGTACAATTCTTG
GGCGAATAGCATTGCCTCCTGGCCACCGGCGCCGGCATTCAGGCCGAAGA
TCAGAGCCGGATACTCCTCATCGTCAGAGAGCGTAAGCAGCTCCTGCAGT
AAGGCCTGATCCTGCTTGCCCAGTAGATCCACATAGACTTCGTTCTCCTC
GCGCATAAGCTCACGCATATCCTC
BO04723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 1179 | CG5705-RA | 271..1176 | 924..19 | 4505 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 379..1284 | 924..19 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220357..13221262 | 924..19 | 4515 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:30:41 has no hits.
BO04723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:53 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 271..1179 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:39 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 271..1179 | 18..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:50 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 379..1294 | 8..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:43:11 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 379..1294 | 8..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:43:11 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220357..13221272 | 8..924 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:50 Download gff for
BO04723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220357..13221272 | 8..924 | 99 | | Minus |
BO04723.5prime Sequence
863 bp (804 high quality bases) assembled on 2005-11-29
> BO04723.5prime
GAAGTTATCAGTCGACATGATATCGCGCAAACTACTAAACCTTCGACTGG
GTTACCTGGCACGCCGTTGGGCCAGCACGGATCCGCTGAGCATTCAGAAC
GAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCAGGAATACTACGCCGT
GCGAGTCAACGCCGCCGGAAACAGCAAATCCTACGCCCGTCTCGCCCAGC
TGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGCGTACTAGAACGGCAC
ATCACCAGCGCCAAGGACATGGAAGCGGAGAAGGACGAGGATATGCGTGA
GCTAATGCGCGAGGAGAACGAAGTCTATGTGGATCTACTGGGCAAGCAGG
ATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCTGACGATGAGGAGTAT
CCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGGTGGCCAGGAGGCAAT
GCTATTCGCCCAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACA
TGGGCTGGGAGTGGGAGGAGTTTGCCAGCGAGGGCACCGACATCGGGGGT
CTGCGGCACGCTAGTCTGATGGTGAGCGGCGAGGATGCCTTCCGCTGGCT
GCGCTATGAGGCTGGAGTTCACCGCGTACAGCGGGTGCCGGCCACTGAAA
AGTCTGGACGCATGCACACCAGCACCGCCTCAATTACAGTGATTCCCCGA
CCCGCCGACATCCAAGTGCACATCGCTGAGAAGGATCTGAAGATCGAGAC
GAAGCGAGCGAGTGGAGCTGGTGGACAGCATGTTAACACCACCGACTCGG
CTGTAAGAATTGTTCATCTGCCCACGGGTCTGGCGGTGGAGGCGCAATCG
GAACGCTCCCAGC
BO04723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 1179 | CG5705-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 109..955 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220087..13220933 | 17..863 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:08:27 has no hits.
BO04723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:08:54 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:24:40 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:05:14 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..955 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:41 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..955 | 17..863 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:41 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220087..13220933 | 17..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:05:14 Download gff for
BO04723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220087..13220933 | 17..863 | 100 | | Plus |
BO04723.complete Sequence
1210 bp (1210 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629852
> BO04723.complete
GAAGTTATCAGTCGACATGATATCGCGCAAACTACTAAACCTTCGACTGG
GTTACCTGGCACGCCGTTGGGCCAGCACGGATCCGCTGAGCATTCAGAAC
GAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCAGGAATACTACGCCGT
GCGAGTCAACGCCGCCGGAAACAGCAAATCCTACGCCCGTCTCGCCCAGC
TGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGCGTACTAGAACGGCAC
ATCACCAGCGCCAAGGACATGGAAGCGGAGAAGGACGAGGATATGCGTGA
GCTAATGCGCGAGGAGAACGAAGTCTATGTGGATCTACTGGGCAAGCAGG
ATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCTGACGATGAGGAGTAT
CCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGGTGGCCAGGAGGCAAT
GCTATTCGCCCAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACA
TGGGCTGGGAGTGGGAGGAGTTTGCCAGCGAGGGCACCGACATCGGGGGT
CTGCGGCACGCTAGTCTGATGGTGAGCGGCGAGGATGCCTTCCGCTGGCT
GCGCTATGAGGCTGGAGTTCACCGCGTACAGCGGGTGCCGGCCACTGAAA
AGTCTGGACGCATGCACACCAGCACCGCCTCAATTACAGTGATTCCCCGA
CCCGCCGACATCCAAGTGCACATCGCTGAGAAGGATCTGAAGATCGAGAC
GAAGCGAGCGAGTGGAGCTGGTGGACAGCATGTTAACACCACCGACTCGG
CTGTAAGAATTGTTCATCTGCCCACGGGTCTGGCGGTGGAGGCGCAATCG
GAACGCTCCCAGCTCAAAAACCGGGAGCTAGCGATGAAGCGTCTACGGTC
GCGACTTGTGCAACAGCAGTTGGAGAGCGTTGAGGCTAGCAAAATGGCCA
CCAAGAAGGCGCAACAGGGTAGTCTCAATCGCAATGAGAAGATCCGTACC
TACAATTTCGTCCAGGACCGCATAACGGATCATCGAATTCAAGGCGGTAC
GCTGCACAACCTCAATGGTTTCCTCAAGGGCGGCGACCAACTGAGTGGAC
TAATAGAGAAGTTGCAACTGGAACATCGAAGGGAACGACTAAAGGAGCTC
TTGGATAGGTGGGAGCCACCAAAAGAAGCTATTGAGAAAAACGCAAGCTT
TCTAGACCAT
BO04723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1179 | CG5705-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-RA | 1420 | CG5705-RA | 109..1284 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13220087..13221262 | 17..1192 | 5880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:49 has no hits.
BO04723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:39:37 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 1..1179 | 17..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:08:29 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 100..1285 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:08 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..1284 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:39:37 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 100..1285 | 17..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:57 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5705-RA | 109..1284 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:57 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13220087..13221262 | 17..1194 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:08 Download gff for
BO04723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13220087..13221262 | 17..1194 | 99 | | Plus |
BO04723.pep Sequence
Translation from 16 to 1210
> BO04723.pep
MISRKLLNLRLGYLARRWASTDPLSIQNEKLQAYLESLRQEYYAVRVNAA
GNSKSYARLAQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREE
NEVYVDLLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQE
LYEMYTGYFEHMGWEWEEFASEGTDIGGLRHASLMVSGEDAFRWLRYEAG
VHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASG
AGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQ
QLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLN
GFLKGGDQLSGLIEKLQLEHRRERLKELLDRWEPPKEAIEKNASFLDH
BO04723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5705-PA | 392 | CG5705-PA | 1..392 | 1..392 | 1986 | 100 | Plus |
